Strain Fitness in Sphingobium sp. HT1-2 around GFF4422

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,416,826	+		GFF4421	0.36	-1.0
4,416,836	+		GFF4421	0.36	-0.3
4,416,836	+		GFF4421	0.36	-1.0
4,416,837	+		GFF4421	0.36	-0.1
4,416,837	+		GFF4421	0.36	-0.2
4,416,837	+		GFF4421	0.36	-0.7
4,416,837	+		GFF4421	0.36	-0.5
4,416,837	+		GFF4421	0.36	+1.3
4,416,837	+		GFF4421	0.36	-0.3
4,416,837	+		GFF4421	0.36	+1.0
4,416,837	+		GFF4421	0.36	-0.6
4,416,837	+		GFF4421	0.36	+0.6
4,416,837	+		GFF4421	0.36	-0.2
4,416,842	+		GFF4421	0.37	+0.8
4,416,844	-		GFF4421	0.37	-1.0
4,416,845	-		GFF4421	0.37	+1.6
4,416,845	-		GFF4421	0.37	-0.5
4,416,845	-		GFF4421	0.37	-0.6
4,416,845	-		GFF4421	0.37	+0.1
4,416,845	-		GFF4421	0.37	-0.0
4,416,845	-		GFF4421	0.37	-0.6
4,416,845	-		GFF4421	0.37	-0.9
4,416,845	-		GFF4421	0.37	-2.6
4,416,845	-		GFF4421	0.37	-2.3
4,416,845	-		GFF4421	0.37	-0.8
4,416,845	-		GFF4421	0.37	-0.1
4,416,845	-		GFF4421	0.37	+0.5
4,416,845	-		GFF4421	0.37	-0.2
4,416,845	-		GFF4421	0.37	+0.3
4,416,845	-		GFF4421	0.37	-1.4
4,416,850	+		GFF4421	0.37	-0.4
4,416,857	+		GFF4421	0.38	+0.6
4,416,857	+		GFF4421	0.38	-1.4
4,416,865	-		GFF4421	0.38	-0.4
4,416,866	-		GFF4421	0.38	-0.6
4,416,915	+		GFF4421	0.41	-0.9
4,416,916	+		GFF4421	0.41	-0.2
4,416,916	+		GFF4421	0.41	+0.7
4,416,916	+		GFF4421	0.41	-0.3
4,416,916	-		GFF4421	0.41	-0.1
4,416,916	-		GFF4421	0.41	-2.2
4,416,916	-		GFF4421	0.41	-1.0
4,416,924	-		GFF4421	0.42	-0.9
4,416,924	-		GFF4421	0.42	+0.1
4,416,932	-		GFF4421	0.42	+0.9
4,416,985	-		GFF4421	0.46	-1.7
4,417,016	+		GFF4421	0.48	-1.1
4,417,016	+		GFF4421	0.48	+0.8
4,417,024	-		GFF4421	0.48	+0.3
4,417,033	-		GFF4421	0.49	-0.6
4,417,048	+		GFF4421	0.50	-0.1
4,417,069	+		GFF4421	0.51	-0.2
4,417,076	-		GFF4421	0.51	-0.6
4,417,078	-		GFF4421	0.52	+0.2
4,417,101	+		GFF4421	0.53	-0.2
4,417,118	+		GFF4421	0.54	-0.0
4,417,120	+		GFF4421	0.54	+0.8
4,417,136	+		GFF4421	0.55	+0.1
4,417,161	+		GFF4421	0.57	-0.9
4,417,182	+		GFF4421	0.58	-2.1
4,417,182	+		GFF4421	0.58	-0.8
4,417,190	-		GFF4421	0.59	-1.6
4,417,205	+		GFF4421	0.59	-0.7
4,417,209	-		GFF4421	0.60	-1.0
4,417,209	-		GFF4421	0.60	-0.7
4,417,214	-		GFF4421	0.60	-0.0
4,417,242	-		GFF4421	0.62	-1.0
4,417,247	-		GFF4421	0.62	-0.7
4,417,252	-		GFF4421	0.62	-0.1
4,417,254	-		GFF4421	0.63	+2.2
4,417,259	+		GFF4421	0.63	-0.3
4,417,267	-		GFF4421	0.63	-0.7
4,417,267	-		GFF4421	0.63	+0.3
4,417,287	+		GFF4421	0.65	-0.1
4,417,293	+		GFF4421	0.65	-1.9
4,417,295	-		GFF4421	0.65	-0.1
4,417,301	+		GFF4421	0.66	-1.2
4,417,301	+		GFF4421	0.66	+1.0
4,417,301	-		GFF4421	0.66	+0.4
4,417,303	+		GFF4421	0.66	-1.3
4,417,303	+		GFF4421	0.66	-2.9
4,417,311	-		GFF4421	0.66	+0.7
4,417,311	-		GFF4421	0.66	-1.1
4,417,311	-		GFF4421	0.66	-0.5
4,417,323	-		GFF4421	0.67	-0.3
4,417,337	-		GFF4421	0.68	+0.6
4,417,342	+		GFF4421	0.68	+0.3
4,417,342	+		GFF4421	0.68	+0.0
4,417,342	+		GFF4421	0.68	-2.1
4,417,342	+		GFF4421	0.68	-1.2
4,417,343	-		GFF4421	0.68	-0.7
4,417,350	+		GFF4421	0.69	-0.4
4,417,357	+		GFF4421	0.69	-1.4
4,417,370	+		GFF4421	0.70	+0.2
4,417,372	-		GFF4421	0.70	+0.3
4,417,374	+		GFF4421	0.70	-0.6
4,417,374	+		GFF4421	0.70	-0.8
4,417,374	+		GFF4421	0.70	-0.1
4,417,385	+		GFF4421	0.71	+0.8
4,417,390	+		GFF4421	0.71	+0.5
4,417,400	+		GFF4421	0.72	-0.6
4,417,435	+		GFF4421	0.74	-0.4
4,417,445	-		GFF4421	0.75	-0.6
4,417,478	-		GFF4421	0.77	-1.6
4,417,478	-		GFF4421	0.77	-0.9
4,417,493	+		GFF4421	0.78	+0.3
4,417,504	+		GFF4421	0.78	+0.7
4,417,517	-		GFF4421	0.79	+0.6
4,417,517	-		GFF4421	0.79	-2.3
4,417,517	-		GFF4421	0.79	-0.3
4,417,615	+		GFF4421	0.85	+0.6
4,417,624	+		GFF4421	0.86	+0.6
4,417,627	-		GFF4421	0.86	+0.1
4,417,632	-		GFF4421	0.86	-0.5
4,417,632	-		GFF4421	0.86	+0.4
4,417,637	+		GFF4421	0.87	+0.2
4,417,637	+		GFF4421	0.87	-0.4
4,417,685	+		GFF4421	0.90	+0.0
4,417,694	+				-1.3
4,417,706	+				+0.2
4,417,714	+				-2.3
4,417,731	+				+0.6
4,417,731	+				-1.6
4,417,739	+				-0.1
4,417,739	+				+0.4
4,417,739	-				-0.2
4,417,757	-				-0.8
4,417,757	-				-0.2
4,417,766	-				+0.8
4,417,772	-				+0.3
4,417,776	+				-0.4
4,417,779	-				-1.7
4,417,787	+				+0.7
4,417,789	-				+1.3
4,417,790	+				+1.7
4,417,790	+				-1.6
4,417,790	+				-0.8
4,417,798	-				-2.1
4,417,798	-				+0.8
4,417,798	-				+0.1
4,417,798	-				-0.2
4,417,800	+				-1.0
4,417,800	+				+0.4
4,417,809	-				-0.7
4,417,821	+				+0.1
4,417,826	+				-1.7
4,417,826	+				-0.3
4,417,826	+				-0.6
4,417,826	+				-1.8
4,417,826	+				-1.4
4,417,826	+				-0.8
4,417,858	-				-0.6
4,417,875	+				+0.1
4,417,880	+				+0.4
4,417,883	-				-0.1
4,417,888	-				-1.9
4,417,888	-				-0.6
4,417,894	+				-1.1
4,417,894	+				+0.1
4,417,894	+				+0.7
4,417,899	+				+0.5
4,417,902	-				-0.2
4,417,902	-				-2.2
4,417,902	-				+2.1
4,417,902	-				-1.8
4,417,902	-				-2.2
4,417,902	-				+0.6
4,417,902	-				+0.2
4,417,919	+				+0.1
4,417,953	-				-1.0
4,417,959	+				-0.6
4,417,959	+				+0.3
4,417,959	+				-0.7
4,417,959	-				+0.1
4,417,966	+				+0.8
4,417,967	-				-1.7
4,417,967	-				+0.0
4,417,967	-				-0.4
4,417,972	+				-0.1
4,417,975	+				+0.9
4,418,002	+		GFF4422	0.10	+0.5
4,418,015	+		GFF4422	0.11	-0.4
4,418,025	-		GFF4422	0.12	-1.3
4,418,030	+		GFF4422	0.12	-1.4
4,418,030	+		GFF4422	0.12	-0.9
4,418,030	+		GFF4422	0.12	-0.1
4,418,031	+		GFF4422	0.12	+0.6
4,418,036	-		GFF4422	0.12	-1.2
4,418,038	-		GFF4422	0.12	-2.2
4,418,039	-		GFF4422	0.12	+0.5
4,418,039	-		GFF4422	0.12	-1.3
4,418,041	-		GFF4422	0.13	-0.7
4,418,132	+		GFF4422	0.18	-1.5
4,418,155	+		GFF4422	0.19	+1.4
4,418,184	+		GFF4422	0.20	+0.1
4,418,185	-		GFF4422	0.20	+0.9
4,418,185	-		GFF4422	0.20	+0.1
4,418,192	-		GFF4422	0.21	+1.3
4,418,192	-		GFF4422	0.21	-0.6
4,418,192	-		GFF4422	0.21	-0.1
4,418,217	+		GFF4422	0.22	-0.5
4,418,223	-		GFF4422	0.23	+0.3
4,418,259	+		GFF4422	0.25	+0.9
4,418,259	+		GFF4422	0.25	+0.3
4,418,261	-		GFF4422	0.25	+0.4
4,418,261	-		GFF4422	0.25	-0.8
4,418,267	-		GFF4422	0.25	-1.7
4,418,267	-		GFF4422	0.25	-0.1
4,418,267	-		GFF4422	0.25	+1.3
4,418,267	-		GFF4422	0.25	+0.1
4,418,290	+		GFF4422	0.26	-0.2
4,418,295	+		GFF4422	0.27	+0.9
4,418,304	-		GFF4422	0.27	-1.4
4,418,340	-		GFF4422	0.29	-1.1
4,418,341	+		GFF4422	0.29	-0.8
4,418,349	-		GFF4422	0.30	-0.9
4,418,372	-		GFF4422	0.31	-0.2
4,418,379	-		GFF4422	0.31	-1.0
4,418,383	-		GFF4422	0.31	-0.1
4,418,419	+		GFF4422	0.33	-0.7
4,418,424	+		GFF4422	0.34	-1.4
4,418,424	+		GFF4422	0.34	-0.5
4,418,424	+		GFF4422	0.34	-2.6
4,418,424	+		GFF4422	0.34	+0.9
4,418,432	-		GFF4422	0.34	+0.7
4,418,432	-		GFF4422	0.34	-1.2
4,418,432	-		GFF4422	0.34	-0.7
4,418,432	-		GFF4422	0.34	-0.1
4,418,432	-		GFF4422	0.34	-2.9
4,418,432	-		GFF4422	0.34	-0.1
4,418,437	-		GFF4422	0.34	-1.6
4,418,443	+		GFF4422	0.35	-0.6
4,418,444	-		GFF4422	0.35	-1.5
4,418,446	+		GFF4422	0.35	+0.6
4,418,446	+		GFF4422	0.35	+1.1
4,418,446	+		GFF4422	0.35	-1.3
4,418,446	+		GFF4422	0.35	-0.5
4,418,446	+		GFF4422	0.35	+0.0
4,418,446	-		GFF4422	0.35	-0.7
4,418,457	+		GFF4422	0.36	-0.1
4,418,460	-		GFF4422	0.36	+0.9
4,418,465	-		GFF4422	0.36	+1.0
4,418,501	+		GFF4422	0.38	+0.0
4,418,506	+		GFF4422	0.38	-0.4
4,418,507	+		GFF4422	0.38	-0.6
4,418,516	+		GFF4422	0.39	-0.2
4,418,540	-		GFF4422	0.40	+1.0
4,418,567	+		GFF4422	0.42	+0.1
4,418,567	+		GFF4422	0.42	+0.0
4,418,567	+		GFF4422	0.42	+0.3
4,418,575	-		GFF4422	0.42	+1.4
4,418,575	-		GFF4422	0.42	+0.8
4,418,575	-		GFF4422	0.42	+1.4
4,418,614	+		GFF4422	0.44	-0.9
4,418,614	+		GFF4422	0.44	+0.7
4,418,621	-		GFF4422	0.45	-0.2
4,418,624	+		GFF4422	0.45	-0.2
4,418,624	+		GFF4422	0.45	-0.9
4,418,630	+		GFF4422	0.45	+0.2
4,418,632	-		GFF4422	0.45	-0.9
4,418,632	-		GFF4422	0.45	-0.7
4,418,632	-		GFF4422	0.45	-0.4
4,418,633	-		GFF4422	0.45	+0.8
4,418,637	+		GFF4422	0.46	+0.5
4,418,638	-		GFF4422	0.46	-0.2
4,418,642	+		GFF4422	0.46	-1.3
4,418,642	+		GFF4422	0.46	+0.7
4,418,650	-		GFF4422	0.46	-1.6
4,418,650	-		GFF4422	0.46	-0.1
4,418,650	-		GFF4422	0.46	-0.9
4,418,682	+		GFF4422	0.48	-0.9
4,418,690	-		GFF4422	0.48	-1.1
4,418,711	+		GFF4422	0.50	+0.9
4,418,714	-		GFF4422	0.50	+0.3
4,418,757	-		GFF4422	0.52	-0.1
4,418,835	-		GFF4422	0.56	-1.7
4,418,882	+		GFF4422	0.59	+0.3
4,418,882	+		GFF4422	0.59	-1.6
4,418,882	+		GFF4422	0.59	+0.3
4,418,890	-		GFF4422	0.60	-0.2
4,418,918	+		GFF4422	0.61	-0.5
4,419,020	-		GFF4422	0.67	+0.3
4,419,028	+		GFF4422	0.67	-0.7
4,419,036	-		GFF4422	0.68	-0.4
4,419,067	+		GFF4422	0.69	+0.0
4,419,085	+		GFF4422	0.70	-0.6
4,419,114	+		GFF4422	0.72	-0.8
4,419,115	+		GFF4422	0.72	+0.2
4,419,115	+		GFF4422	0.72	+0.0
4,419,122	-		GFF4422	0.72	-0.3
4,419,122	-		GFF4422	0.72	-0.6
4,419,123	-		GFF4422	0.72	-0.3
4,419,133	+		GFF4422	0.73	+0.2
4,419,137	-		GFF4422	0.73	-0.6
4,419,141	-		GFF4422	0.73	-1.8
4,419,145	+		GFF4422	0.74	+0.1
4,419,173	-		GFF4422	0.75	-0.4
4,419,188	-		GFF4422	0.76	+1.9
4,419,220	-		GFF4422	0.78	-1.0
4,419,226	-		GFF4422	0.78	+0.9
4,419,230	+		GFF4422	0.78	+0.8
4,419,238	-		GFF4422	0.79	-0.9
4,419,260	-		GFF4422	0.80	+0.3
4,419,261	+		GFF4422	0.80	-1.7
4,419,261	+		GFF4422	0.80	-0.9
4,419,261	+		GFF4422	0.80	+0.4
4,419,261	+		GFF4422	0.80	-0.0
4,419,269	-		GFF4422	0.81	-0.6
4,419,269	-		GFF4422	0.81	-0.0
4,419,279	-		GFF4422	0.81	+0.3
4,419,286	+		GFF4422	0.81	-0.6
4,419,286	+		GFF4422	0.81	-0.7
4,419,296	-		GFF4422	0.82	+0.8
4,419,341	-		GFF4422	0.84	+0.5
4,419,342	+		GFF4422	0.85	-1.9
4,419,349	-		GFF4422	0.85	-0.4
4,419,350	-		GFF4422	0.85	-0.7
4,419,350	-		GFF4422	0.85	+0.7
4,419,350	-		GFF4422	0.85	+0.6
4,419,350	-		GFF4422	0.85	+0.9
4,419,352	+		GFF4422	0.85	-0.9
4,419,352	+		GFF4422	0.85	-0.7
4,419,359	+		GFF4422	0.85	-0.1
4,419,359	+		GFF4422	0.85	-0.3
4,419,367	+		GFF4422	0.86	-1.7
4,419,376	+		GFF4422	0.86	-1.9
4,419,381	+		GFF4422	0.87	+0.3
4,419,384	+		GFF4422	0.87	+0.2
4,419,384	+		GFF4422	0.87	+1.1
4,419,384	+		GFF4422	0.87	+0.2
4,419,384	-		GFF4422	0.87	-0.6
4,419,391	+		GFF4422	0.87	-1.7
4,419,392	-		GFF4422	0.87	-0.3
4,419,392	-		GFF4422	0.87	-0.4
4,419,399	-		GFF4422	0.88	+0.6
4,419,406	-		GFF4422	0.88	-1.9
4,419,409	-		GFF4422	0.88	-0.7
4,419,435	-		GFF4422	0.90	-1.0
4,419,469	-				-0.4
4,419,494	-				-0.2
4,419,494	-				+0.3
4,419,507	+				-1.9
4,419,512	+				-0.5
4,419,512	+				-1.3
4,419,512	+				-0.6
4,419,513	+				-1.3
4,419,515	-				-1.8
4,419,517	+				+0.8
4,419,520	-				-0.7
4,419,520	-				-0.2
4,419,520	-				-0.3
4,419,520	-				+1.2
4,419,529	-				+0.4
4,419,535	-				+2.1
4,419,535	-				-0.9
4,419,554	-				-1.2
4,419,567	+				-0.4
4,419,567	+				-1.2
4,419,573	-				+0.3
4,419,575	+				-0.9
4,419,575	-				-1.2
4,419,575	-				-0.9
4,419,575	-				+0.4
4,419,586	+				+0.8
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