Strain Fitness in Sphingobium sp. HT1-2 around GFF4366

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,363,986	-		GFF4364	0.63	-1.0
4,363,994	-		GFF4364	0.65	+0.1
4,363,997	+		GFF4364	0.65	-1.6
4,363,997	+		GFF4364	0.65	-1.4
4,363,997	+		GFF4364	0.65	-1.9
4,364,000	-		GFF4364	0.66	+1.7
4,364,001	-		GFF4364	0.66	-0.1
4,364,003	+		GFF4364	0.66	+1.0
4,364,003	+		GFF4364	0.66	+0.0
4,364,003	+		GFF4364	0.66	+0.9
4,364,004	+		GFF4364	0.66	-0.7
4,364,004	+		GFF4364	0.66	-0.1
4,364,005	-		GFF4364	0.67	+0.7
4,364,005	-		GFF4364	0.67	-1.0
4,364,005	-		GFF4364	0.67	-1.6
4,364,005	-		GFF4364	0.67	-0.7
4,364,011	-		GFF4364	0.68	-1.8
4,364,011	-		GFF4364	0.68	+0.3
4,364,011	-		GFF4364	0.68	+0.6
4,364,011	-		GFF4364	0.68	+0.4
4,364,011	-		GFF4364	0.68	+0.3
4,364,011	-		GFF4364	0.68	+0.4
4,364,011	-		GFF4364	0.68	-0.5
4,364,011	-		GFF4364	0.68	-0.1
4,364,049	+		GFF4364	0.75	+0.7
4,364,072	+		GFF4364	0.79	-0.2
4,364,080	-		GFF4364	0.80	-1.5
4,364,084	+		GFF4364	0.81	-0.9
4,364,092	-		GFF4364	0.83	+0.1
4,364,092	-		GFF4364	0.83	-0.2
4,364,106	-		GFF4364	0.85	+0.4
4,364,127	+		GFF4364	0.89	-1.8
4,364,127	+		GFF4364	0.89	-1.1
4,364,127	+		GFF4364	0.89	-0.3
4,364,127	+		GFF4364	0.89	-0.4
4,364,127	+		GFF4364	0.89	-0.3
4,364,135	-				+0.6
4,364,135	-				-0.4
4,364,135	-				-0.7
4,364,137	+				+0.8
4,364,145	+				+1.1
4,364,150	+				-1.9
4,364,165	-				+0.5
4,364,180	+				-1.2
4,364,181	+				+0.3
4,364,188	-				+0.2
4,364,195	-				-0.9
4,364,226	+				+0.7
4,364,241	-				+0.7
4,364,243	+				+0.9
4,364,243	+				-0.6
4,364,251	-				+0.4
4,364,251	-				-1.6
4,364,251	-				+0.6
4,364,258	-				+0.1
4,364,260	+				-0.5
4,364,261	+				-0.3
4,364,263	-				-0.5
4,364,264	-				-1.4
4,364,264	-				-0.8
4,364,268	-				-2.6
4,364,288	-				-1.2
4,364,299	+				-1.6
4,364,299	+				-0.4
4,364,299	+				+0.9
4,364,299	+				+0.4
4,364,312	-				+0.2
4,364,365	-		GFF4365	0.16	+0.9
4,364,408	+		GFF4365	0.25	-1.9
4,364,423	-		GFF4365	0.28	-0.1
4,364,423	-		GFF4365	0.28	-0.0
4,364,435	+		GFF4365	0.30	+0.9
4,364,442	-		GFF4365	0.32	-0.0
4,364,449	+		GFF4365	0.33	-0.1
4,364,452	-		GFF4365	0.34	+1.3
4,364,487	-		GFF4365	0.41	+0.3
4,364,495	+		GFF4365	0.43	-0.6
4,364,503	-		GFF4365	0.45	-0.9
4,364,509	+		GFF4365	0.46	-0.1
4,364,525	+		GFF4365	0.49	-1.7
4,364,525	+		GFF4365	0.49	-0.3
4,364,530	+		GFF4365	0.50	-0.3
4,364,535	+		GFF4365	0.51	-0.4
4,364,543	-		GFF4365	0.53	-0.3
4,364,558	-		GFF4365	0.56	-0.0
4,364,573	+		GFF4365	0.59	-0.8
4,364,578	+		GFF4365	0.60	-0.4
4,364,587	+		GFF4365	0.62	-0.9
4,364,590	-		GFF4365	0.63	+0.6
4,364,592	+		GFF4365	0.63	-0.3
4,364,600	-		GFF4365	0.65	-0.6
4,364,602	-		GFF4365	0.65	-0.3
4,364,605	+		GFF4365	0.66	-0.6
4,364,627	+		GFF4365	0.71	-1.9
4,364,627	+		GFF4365	0.71	-0.1
4,364,635	-		GFF4365	0.72	+0.4
4,364,678	+		GFF4365	0.81	+0.1
4,364,678	+		GFF4365	0.81	+1.3
4,364,678	+		GFF4365	0.81	+0.4
4,364,680	+		GFF4365	0.82	-0.5
4,364,686	-		GFF4365	0.83	-0.6
4,364,686	-		GFF4365	0.83	-1.0
4,364,688	+		GFF4365	0.83	-0.7
4,364,688	+		GFF4365	0.83	-0.9
4,364,696	-		GFF4365	0.85	-1.1
4,364,702	+		GFF4365	0.86	-0.1
4,364,709	-		GFF4365	0.88	+1.2
4,364,720	-				+0.8
4,364,730	+				-0.9
4,364,731	-				+0.0
4,364,737	-				+0.6
4,364,748	+				-0.2
4,364,761	-				+1.0
4,364,761	-				-0.8
4,364,779	-				-0.5
4,364,784	-				-0.5
4,364,788	+				+0.2
4,364,791	-				-0.2
4,364,791	-				+0.5
4,364,791	-				-0.8
4,364,793	+				-1.3
4,364,796	-				+1.0
4,364,796	-				-0.4
4,364,807	-				-1.7
4,364,814	+				+0.4
4,364,814	+				-0.9
4,364,814	+				+0.1
4,364,814	+				-0.7
4,364,820	+				-0.5
4,364,820	+				-2.1
4,364,822	-				-0.7
4,364,822	-				-1.1
4,364,822	-				+0.6
4,364,822	-				+0.7
4,364,829	-				-1.4
4,364,861	-				-1.6
4,364,866	-				-0.6
4,364,866	-				-1.6
4,364,876	+				+0.7
4,364,876	+				-2.4
4,364,884	-				-1.7
4,364,884	-				-1.3
4,364,884	-				+0.3
4,364,894	+				+0.6
4,364,894	+				-0.4
4,364,894	+				-1.4
4,364,897	-				-1.3
4,364,899	+				+0.5
4,364,899	+				+0.1
4,364,900	+				-1.3
4,364,900	+				-0.4
4,364,900	+				-0.1
4,364,900	+				+0.1
4,364,902	-				-1.9
4,364,902	-				+0.6
4,364,902	-				-0.9
4,364,907	-				-0.0
4,364,908	-				-0.5
4,364,908	-				-0.5
4,364,927	+				-0.6
4,364,927	+				+0.6
4,364,927	+				+0.1
4,364,927	+				-0.0
4,364,931	-				-0.6
4,364,935	-				+1.7
4,364,935	-				-0.9
4,364,946	+				-0.9
4,364,946	+				-1.4
4,364,946	+				-1.1
4,364,976	+				+0.3
4,364,983	+				-1.1
4,364,984	+				+1.5
4,364,984	-				+0.6
4,364,984	-				-1.4
4,365,024	+				-2.1
4,365,024	+				-0.2
4,365,024	+				-1.7
4,365,024	+				-1.9
4,365,024	+				+0.6
4,365,024	+				-0.1
4,365,024	+				-0.2
4,365,024	+				-2.3
4,365,024	+				+0.1
4,365,024	+				+0.1
4,365,024	+				-1.1
4,365,024	+				+0.3
4,365,024	+				-0.7
4,365,024	+				+0.1
4,365,029	+				+0.2
4,365,029	+				+0.9
4,365,029	+				+0.5
4,365,029	+				+0.2
4,365,029	+				-0.4
4,365,029	+				+0.6
4,365,029	+				-0.3
4,365,029	+				-0.6
4,365,029	+				+0.1
4,365,032	-				-0.5
4,365,032	-				-1.9
4,365,032	-				-0.0
4,365,032	-				+0.7
4,365,032	-				-2.1
4,365,032	-				-2.1
4,365,032	-				-1.1
4,365,032	-				-1.2
4,365,032	-				-0.8
4,365,032	-				-0.6
4,365,032	-				-0.4
4,365,032	-				+1.2
4,365,032	-				-1.3
4,365,032	-				-0.2
4,365,032	-				-1.0
4,365,032	-				-1.3
4,365,034	+				+0.2
4,365,037	-				-2.1
4,365,037	-				+0.2
4,365,037	-				-0.9
4,365,037	-				-1.6
4,365,037	-				-0.1
4,365,037	-				-0.7
4,365,037	-				-0.7
4,365,037	-				-0.9
4,365,039	+				-0.8
4,365,039	+				-1.9
4,365,041	+				-0.4
4,365,042	-				-0.4
4,365,047	-				-1.2
4,365,049	-				-0.6
4,365,056	+				+0.6
4,365,059	-				+0.8
4,365,066	+				-0.2
4,365,076	+		GFF4366	0.11	-0.6
4,365,081	+		GFF4366	0.12	-0.5
4,365,084	+		GFF4366	0.12	+0.6
4,365,093	+		GFF4366	0.13	+0.6
4,365,098	+		GFF4366	0.13	-1.4
4,365,098	+		GFF4366	0.13	+0.1
4,365,099	+		GFF4366	0.14	+0.1
4,365,099	+		GFF4366	0.14	-0.4
4,365,099	+		GFF4366	0.14	-0.2
4,365,101	-		GFF4366	0.14	-0.2
4,365,101	-		GFF4366	0.14	-1.9
4,365,101	-		GFF4366	0.14	+0.6
4,365,101	-		GFF4366	0.14	-0.3
4,365,105	+		GFF4366	0.14	+0.3
4,365,105	+		GFF4366	0.14	+0.6
4,365,105	+		GFF4366	0.14	-1.4
4,365,106	-		GFF4366	0.14	-1.4
4,365,106	-		GFF4366	0.14	+1.3
4,365,106	-		GFF4366	0.14	+1.0
4,365,106	-		GFF4366	0.14	+0.4
4,365,106	-		GFF4366	0.14	+1.5
4,365,107	-		GFF4366	0.14	-0.8
4,365,107	-		GFF4366	0.14	-1.9
4,365,107	-		GFF4366	0.14	+1.1
4,365,107	-		GFF4366	0.14	-0.6
4,365,113	-		GFF4366	0.15	+0.7
4,365,113	-		GFF4366	0.15	+0.7
4,365,113	-		GFF4366	0.15	-1.3
4,365,123	+		GFF4366	0.16	+0.3
4,365,123	+		GFF4366	0.16	-1.9
4,365,153	+		GFF4366	0.19	+1.0
4,365,156	-		GFF4366	0.20	-1.3
4,365,156	-		GFF4366	0.20	+0.8
4,365,184	-		GFF4366	0.23	-0.9
4,365,186	+		GFF4366	0.23	+0.8
4,365,194	-		GFF4366	0.24	+0.1
4,365,194	-		GFF4366	0.24	-1.4
4,365,194	-		GFF4366	0.24	+2.1
4,365,194	-		GFF4366	0.24	-1.4
4,365,194	-		GFF4366	0.24	-0.8
4,365,194	-		GFF4366	0.24	-0.5
4,365,194	-		GFF4366	0.24	+0.7
4,365,194	-		GFF4366	0.24	-2.3
4,365,207	+		GFF4366	0.25	-3.3
4,365,208	+		GFF4366	0.25	-0.4
4,365,224	-		GFF4366	0.27	-0.2
4,365,224	-		GFF4366	0.27	+1.1
4,365,224	-		GFF4366	0.27	+1.1
4,365,224	-		GFF4366	0.27	-0.2
4,365,226	+		GFF4366	0.27	-0.4
4,365,227	+		GFF4366	0.27	-0.6
4,365,227	+		GFF4366	0.27	-1.5
4,365,232	+		GFF4366	0.28	+0.6
4,365,235	-		GFF4366	0.28	+0.8
4,365,246	+		GFF4366	0.30	-1.0
4,365,246	+		GFF4366	0.30	-1.7
4,365,249	-		GFF4366	0.30	+0.2
4,365,254	-		GFF4366	0.30	+0.7
4,365,255	+		GFF4366	0.31	-2.0
4,365,258	+		GFF4366	0.31	+0.2
4,365,258	+		GFF4366	0.31	+0.9
4,365,295	+		GFF4366	0.35	+0.2
4,365,295	+		GFF4366	0.35	-0.1
4,365,295	+		GFF4366	0.35	-0.3
4,365,295	+		GFF4366	0.35	+0.1
4,365,295	-		GFF4366	0.35	-1.2
4,365,298	-		GFF4366	0.35	-1.4
4,365,303	-		GFF4366	0.36	-1.1
4,365,303	-		GFF4366	0.36	+0.1
4,365,303	-		GFF4366	0.36	-0.3
4,365,303	-		GFF4366	0.36	-0.5
4,365,310	-		GFF4366	0.36	-0.1
4,365,312	+		GFF4366	0.37	-0.4
4,365,318	+		GFF4366	0.37	-0.6
4,365,326	-		GFF4366	0.38	-0.0
4,365,326	-		GFF4366	0.38	-2.7
4,365,329	+		GFF4366	0.39	-0.0
4,365,334	+		GFF4366	0.39	+0.6
4,365,334	+		GFF4366	0.39	-0.7
4,365,334	+		GFF4366	0.39	-0.6
4,365,334	+		GFF4366	0.39	-0.0
4,365,334	+		GFF4366	0.39	-0.9
4,365,342	+		GFF4366	0.40	-1.8
4,365,342	-		GFF4366	0.40	-0.0
4,365,342	-		GFF4366	0.40	-0.6
4,365,342	-		GFF4366	0.40	-0.1
4,365,342	-		GFF4366	0.40	-0.4
4,365,342	-		GFF4366	0.40	-1.1
4,365,342	-		GFF4366	0.40	-0.5
4,365,351	+		GFF4366	0.41	+0.5
4,365,370	+		GFF4366	0.43	-0.6
4,365,386	+		GFF4366	0.45	+0.3
4,365,394	-		GFF4366	0.46	+1.2
4,365,394	-		GFF4366	0.46	-2.3
4,365,396	+		GFF4366	0.46	-0.3
4,365,431	+		GFF4366	0.50	-0.1
4,365,436	+		GFF4366	0.50	-0.7
4,365,436	+		GFF4366	0.50	-0.8
4,365,438	+		GFF4366	0.50	+0.6
4,365,446	-		GFF4366	0.51	-0.8
4,365,456	-		GFF4366	0.52	+0.7
4,365,463	+		GFF4366	0.53	-0.5
4,365,465	+		GFF4366	0.53	+0.4
4,365,465	+		GFF4366	0.53	-0.6
4,365,465	+		GFF4366	0.53	+0.3
4,365,465	+		GFF4366	0.53	-2.1
4,365,467	+		GFF4366	0.54	-0.6
4,365,473	-		GFF4366	0.54	-1.0
4,365,473	-		GFF4366	0.54	+0.6
4,365,473	-		GFF4366	0.54	-0.3
4,365,473	-		GFF4366	0.54	-0.1
4,365,475	+		GFF4366	0.54	+0.1
4,365,492	-		GFF4366	0.56	+0.5
4,365,506	+		GFF4366	0.58	-2.0
4,365,513	-		GFF4366	0.59	-0.9
4,365,539	+		GFF4366	0.61	-0.6
4,365,542	-		GFF4366	0.62	-1.4
4,365,553	-		GFF4366	0.63	+0.8
4,365,567	+		GFF4366	0.64	-2.4
4,365,567	+		GFF4366	0.64	+0.6
4,365,574	-		GFF4366	0.65	-1.4
4,365,581	+		GFF4366	0.66	+0.2
4,365,581	+		GFF4366	0.66	+1.0
4,365,581	+		GFF4366	0.66	-1.0
4,365,581	+		GFF4366	0.66	-0.6
4,365,581	+		GFF4366	0.66	+0.3
4,365,581	+		GFF4366	0.66	+0.4
4,365,581	+		GFF4366	0.66	+0.3
4,365,589	-		GFF4366	0.67	+1.1
4,365,589	-		GFF4366	0.67	-0.0
4,365,591	+		GFF4366	0.67	+0.5
4,365,610	+		GFF4366	0.69	+0.1
4,365,632	+		GFF4366	0.72	-1.7
4,365,664	+		GFF4366	0.75	-0.1
4,365,664	+		GFF4366	0.75	+0.3
4,365,672	-		GFF4366	0.76	-0.0
4,365,731	+		GFF4366	0.82	-1.4
4,365,731	+		GFF4366	0.82	-2.5
4,365,731	+		GFF4366	0.82	+0.6
4,365,737	-		GFF4366	0.83	+0.3
4,365,739	-		GFF4366	0.83	+1.7
4,365,739	-		GFF4366	0.83	-0.9
4,365,739	-		GFF4366	0.83	-0.6
4,365,739	-		GFF4366	0.83	+0.5
4,365,739	-		GFF4366	0.83	+0.6
4,365,739	-		GFF4366	0.83	-0.4
4,365,739	-		GFF4366	0.83	+0.9
4,365,739	-		GFF4366	0.83	-0.4
4,365,739	-		GFF4366	0.83	-1.5
4,365,750	+		GFF4366	0.84	+0.3
4,365,764	-		GFF4366	0.86	+0.7
4,365,779	-		GFF4366	0.88	-1.9
4,365,779	-		GFF4366	0.88	+0.6
4,365,804	+				-0.6
4,365,804	+				-0.2
4,365,804	+				-3.1
4,365,804	+				-0.2
4,365,812	-				-1.7
4,365,850	+				+0.6
4,365,850	+				-0.6
4,365,850	+				-0.7
4,365,850	+				-0.0
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