Strain Fitness in Sphingobium sp. HT1-2 around GFF4344

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,344,476	+		GFF4342	0.43	+0.4
4,344,486	+		GFF4342	0.44	+0.9
4,344,486	+		GFF4342	0.44	+0.2
4,344,486	+		GFF4342	0.44	-0.4
4,344,486	+		GFF4342	0.44	+0.9
4,344,486	+		GFF4342	0.44	-0.5
4,344,489	-		GFF4342	0.45	-2.9
4,344,494	-		GFF4342	0.46	-0.3
4,344,494	-		GFF4342	0.46	-1.3
4,344,494	-		GFF4342	0.46	-0.8
4,344,494	-		GFF4342	0.46	-1.5
4,344,494	-		GFF4342	0.46	+0.4
4,344,494	-		GFF4342	0.46	-2.1
4,344,494	-		GFF4342	0.46	-0.2
4,344,495	+		GFF4342	0.46	-0.6
4,344,538	+		GFF4342	0.53	-0.3
4,344,562	+		GFF4342	0.57	+0.5
4,344,576	-		GFF4342	0.59	-0.7
4,344,588	+		GFF4342	0.61	+0.8
4,344,594	+		GFF4342	0.62	-1.1
4,344,596	-		GFF4342	0.63	+0.9
4,344,596	-		GFF4342	0.63	+0.5
4,344,596	-		GFF4342	0.63	+0.7
4,344,596	-		GFF4342	0.63	+0.7
4,344,596	-		GFF4342	0.63	-0.5
4,344,596	-		GFF4342	0.63	-0.1
4,344,596	-		GFF4342	0.63	+0.5
4,344,602	-		GFF4342	0.64	-1.5
4,344,602	-		GFF4342	0.64	+0.3
4,344,602	-		GFF4342	0.64	-1.4
4,344,609	+		GFF4342	0.65	-0.7
4,344,617	-		GFF4342	0.66	-1.3
4,344,623	+		GFF4342	0.67	+0.8
4,344,631	-		GFF4342	0.68	+0.1
4,344,631	-		GFF4342	0.68	+0.2
4,344,653	+		GFF4342	0.72	-1.9
4,344,653	+		GFF4342	0.72	-2.8
4,344,653	+		GFF4342	0.72	-1.6
4,344,653	+		GFF4342	0.72	-0.2
4,344,661	-		GFF4342	0.73	-0.2
4,344,661	-		GFF4342	0.73	+1.0
4,344,661	-		GFF4342	0.73	+0.8
4,344,661	-		GFF4342	0.73	+0.6
4,344,661	-		GFF4342	0.73	-0.8
4,344,661	-		GFF4342	0.73	-1.4
4,344,661	-		GFF4342	0.73	-0.6
4,344,689	+		GFF4342	0.78	+0.1
4,344,697	-		GFF4342	0.79	+0.5
4,344,705	-		GFF4342	0.81	-1.1
4,344,717	-		GFF4342	0.83	-0.6
4,344,725	+		GFF4342	0.84	-2.2
4,344,728	-		GFF4342	0.85	-0.8
4,344,733	-		GFF4342	0.85	+0.4
4,344,733	-		GFF4342	0.85	+0.7
4,344,755	-		GFF4342	0.89	-1.6
4,344,792	+				-1.4
4,344,805	-				-0.1
4,344,816	+				-1.7
4,344,816	+				-1.7
4,344,824	-				+1.2
4,344,824	-				-1.8
4,344,834	-				-0.7
4,344,842	+				-2.2
4,344,842	+				-0.9
4,344,850	-				-0.7
4,344,852	-				+0.9
4,344,860	-				-0.6
4,344,867	+				+1.0
4,344,867	+				-0.7
4,344,887	+				-0.7
4,344,906	+				-0.6
4,344,906	+				-2.4
4,344,914	-				+0.7
4,344,914	-				+0.4
4,344,914	-				+0.0
4,344,914	-				-0.3
4,344,914	-				+1.2
4,344,914	-				-0.2
4,344,921	+				+0.9
4,344,938	+		GFF4343	0.14	-0.4
4,344,938	+		GFF4343	0.14	+1.5
4,344,946	-		GFF4343	0.16	-1.7
4,344,951	-		GFF4343	0.17	-1.7
4,344,951	-		GFF4343	0.17	+0.2
4,344,965	+		GFF4343	0.21	-1.5
4,344,993	+		GFF4343	0.28	-2.3
4,344,993	+		GFF4343	0.28	-0.8
4,344,993	-		GFF4343	0.28	-2.7
4,344,998	+		GFF4343	0.29	+0.3
4,345,001	-		GFF4343	0.30	-0.2
4,345,003	+		GFF4343	0.30	+0.4
4,345,003	+		GFF4343	0.30	+0.6
4,345,003	+		GFF4343	0.30	+0.1
4,345,003	+		GFF4343	0.30	+0.6
4,345,003	+		GFF4343	0.30	+0.6
4,345,003	+		GFF4343	0.30	-0.9
4,345,003	+		GFF4343	0.30	-0.4
4,345,011	-		GFF4343	0.32	-0.3
4,345,011	-		GFF4343	0.32	+0.2
4,345,011	-		GFF4343	0.32	-0.1
4,345,011	-		GFF4343	0.32	+0.1
4,345,011	-		GFF4343	0.32	-1.2
4,345,011	-		GFF4343	0.32	+0.9
4,345,011	-		GFF4343	0.32	-0.5
4,345,011	-		GFF4343	0.32	+0.1
4,345,021	+		GFF4343	0.35	-0.6
4,345,021	+		GFF4343	0.35	-0.5
4,345,021	+		GFF4343	0.35	+1.3
4,345,024	-		GFF4343	0.35	-1.6
4,345,026	+		GFF4343	0.36	-1.3
4,345,026	+		GFF4343	0.36	+1.4
4,345,026	+		GFF4343	0.36	+0.2
4,345,026	+		GFF4343	0.36	-0.2
4,345,026	+		GFF4343	0.36	+1.1
4,345,029	+		GFF4343	0.37	+0.2
4,345,029	-		GFF4343	0.37	-1.3
4,345,029	-		GFF4343	0.37	-0.6
4,345,029	-		GFF4343	0.37	-0.1
4,345,031	+		GFF4343	0.37	+0.2
4,345,031	+		GFF4343	0.37	+1.8
4,345,031	+		GFF4343	0.37	-1.6
4,345,034	-		GFF4343	0.38	-0.1
4,345,034	-		GFF4343	0.38	-1.0
4,345,036	+		GFF4343	0.38	+0.4
4,345,036	+		GFF4343	0.38	-0.4
4,345,037	-		GFF4343	0.39	-1.2
4,345,039	-		GFF4343	0.39	-0.6
4,345,041	+		GFF4343	0.40	+1.0
4,345,044	-		GFF4343	0.40	+0.2
4,345,044	-		GFF4343	0.40	+0.2
4,345,044	-		GFF4343	0.40	+1.1
4,345,044	-		GFF4343	0.40	-0.5
4,345,044	-		GFF4343	0.40	-2.6
4,345,044	-		GFF4343	0.40	+0.2
4,345,052	+		GFF4343	0.42	+0.4
4,345,065	-		GFF4343	0.46	-0.1
4,345,067	+		GFF4343	0.46	-0.4
4,345,084	-		GFF4343	0.50	-0.1
4,345,119	+		GFF4343	0.59	-2.1
4,345,128	-		GFF4343	0.61	-1.1
4,345,135	-		GFF4343	0.63	+0.0
4,345,146	+		GFF4343	0.66	-1.5
4,345,150	+		GFF4343	0.67	+0.0
4,345,150	+		GFF4343	0.67	-1.4
4,345,150	+		GFF4343	0.67	-0.3
4,345,150	+		GFF4343	0.67	+0.3
4,345,160	+		GFF4343	0.69	+0.9
4,345,160	+		GFF4343	0.69	-0.4
4,345,165	+		GFF4343	0.71	+0.2
4,345,168	-		GFF4343	0.71	+1.0
4,345,168	-		GFF4343	0.71	+0.7
4,345,168	-		GFF4343	0.71	-0.2
4,345,176	-		GFF4343	0.73	-0.3
4,345,183	-		GFF4343	0.75	+1.3
4,345,183	-		GFF4343	0.75	-0.7
4,345,194	+		GFF4343	0.78	+0.6
4,345,201	+		GFF4343	0.80	-0.5
4,345,201	+		GFF4343	0.80	-0.2
4,345,201	+		GFF4343	0.80	+1.1
4,345,204	+		GFF4343	0.80	-0.6
4,345,209	-		GFF4343	0.82	+0.7
4,345,209	-		GFF4343	0.82	+0.7
4,345,214	+		GFF4343	0.83	-1.5
4,345,233	+		GFF4343	0.88	+1.0
4,345,233	+		GFF4343	0.88	-0.3
4,345,233	+		GFF4343	0.88	-0.0
4,345,233	+		GFF4343	0.88	+0.4
4,345,241	-		GFF4343	0.90	+0.9
4,345,241	-		GFF4343	0.90	+0.6
4,345,241	-		GFF4343	0.90	-0.1
4,345,241	-		GFF4343	0.90	+0.6
4,345,241	-		GFF4343	0.90	-0.1
4,345,241	-		GFF4343	0.90	-1.4
4,345,241	-		GFF4343	0.90	-1.6
4,345,241	-		GFF4343	0.90	+1.0
4,345,241	-		GFF4343	0.90	+0.2
4,345,249	+				+0.9
4,345,262	-				-0.7
4,345,281	+				+1.3
4,345,290	-				-0.5
4,345,334	+				+0.2
4,345,334	+				+1.3
4,345,342	-				-0.8
4,345,342	-				+0.6
4,345,347	-				-0.4
4,345,410	+				-0.4
4,345,410	+				-0.7
4,345,415	+				+0.2
4,345,415	+				-1.7
4,345,418	-				-1.6
4,345,420	+				+0.4
4,345,420	+				+1.2
4,345,420	+				-0.3
4,345,423	-				+0.8
4,345,425	+				-1.7
4,345,428	-				-0.2
4,345,428	-				-1.6
4,345,428	-				+2.3
4,345,428	-				+0.8
4,345,428	-				+0.8
4,345,477	-				-1.7
4,345,487	-				-0.4
4,345,492	-				-0.3
4,345,502	+				-1.2
4,345,503	+				-0.3
4,345,524	-				+1.5
4,345,565	-				+0.9
4,345,572	+				+1.0
4,345,579	-				-0.0
4,345,580	+				+0.2
4,345,580	+				+0.8
4,345,588	-				-2.3
4,345,588	-				-2.2
4,345,591	+				+1.2
4,345,591	+				-1.4
4,345,599	-				-0.3
4,345,599	-				-0.0
4,345,617	+		GFF4344	0.11	-1.3
4,345,628	-		GFF4344	0.12	-1.2
4,345,628	-		GFF4344	0.12	-1.8
4,345,647	+		GFF4344	0.13	-0.7
4,345,655	-		GFF4344	0.14	-2.4
4,345,673	+		GFF4344	0.15	-0.6
4,345,697	+		GFF4344	0.17	-2.0
4,345,701	+		GFF4344	0.18	+0.5
4,345,727	+		GFF4344	0.20	+0.5
4,345,727	+		GFF4344	0.20	+0.1
4,345,727	+		GFF4344	0.20	+0.3
4,345,727	+		GFF4344	0.20	-2.6
4,345,727	+		GFF4344	0.20	+0.1
4,345,732	+		GFF4344	0.20	-2.4
4,345,735	-		GFF4344	0.20	-0.3
4,345,735	-		GFF4344	0.20	+1.4
4,345,740	-		GFF4344	0.21	-0.1
4,345,745	+		GFF4344	0.21	+0.8
4,345,753	-		GFF4344	0.22	+0.6
4,345,763	-		GFF4344	0.22	-1.5
4,345,765	+		GFF4344	0.23	-2.0
4,345,768	-		GFF4344	0.23	-2.2
4,345,771	+		GFF4344	0.23	-1.4
4,345,772	+		GFF4344	0.23	-1.6
4,345,773	-		GFF4344	0.23	+0.6
4,345,794	+		GFF4344	0.25	-0.3
4,345,794	+		GFF4344	0.25	-0.4
4,345,829	+		GFF4344	0.27	-1.2
4,345,833	+		GFF4344	0.28	+0.2
4,345,834	+		GFF4344	0.28	-1.9
4,345,842	-		GFF4344	0.28	-0.6
4,345,876	+		GFF4344	0.31	-0.9
4,345,922	+		GFF4344	0.35	-2.7
4,345,960	-		GFF4344	0.38	-0.8
4,345,977	+		GFF4344	0.39	+0.4
4,345,977	+		GFF4344	0.39	+0.0
4,345,977	+		GFF4344	0.39	-0.6
4,345,977	+		GFF4344	0.39	-1.6
4,345,977	+		GFF4344	0.39	-1.3
4,345,980	-		GFF4344	0.39	+0.4
4,345,985	-		GFF4344	0.39	-0.5
4,345,985	-		GFF4344	0.39	-0.4
4,345,985	-		GFF4344	0.39	-2.5
4,345,985	-		GFF4344	0.39	+0.3
4,345,985	-		GFF4344	0.39	+0.5
4,346,007	-		GFF4344	0.41	-0.2
4,346,022	-		GFF4344	0.42	-0.3
4,346,022	-		GFF4344	0.42	-1.8
4,346,022	-		GFF4344	0.42	-0.8
4,346,026	+		GFF4344	0.43	-1.9
4,346,045	-		GFF4344	0.44	+0.8
4,346,047	-		GFF4344	0.44	-1.0
4,346,081	-		GFF4344	0.47	-0.3
4,346,088	+		GFF4344	0.47	-1.6
4,346,130	+		GFF4344	0.51	+0.1
4,346,130	+		GFF4344	0.51	+0.1
4,346,132	+		GFF4344	0.51	+0.9
4,346,138	-		GFF4344	0.51	-0.3
4,346,140	+		GFF4344	0.51	-0.4
4,346,140	+		GFF4344	0.51	-0.2
4,346,140	+		GFF4344	0.51	-2.6
4,346,140	+		GFF4344	0.51	-1.3
4,346,146	+		GFF4344	0.52	-1.2
4,346,148	-		GFF4344	0.52	-1.5
4,346,148	-		GFF4344	0.52	+0.7
4,346,154	+		GFF4344	0.53	-0.3
4,346,186	-		GFF4344	0.55	-0.6
4,346,186	-		GFF4344	0.55	-0.6
4,346,194	+		GFF4344	0.56	-0.6
4,346,202	-		GFF4344	0.56	+1.4
4,346,207	-		GFF4344	0.57	-0.8
4,346,210	+		GFF4344	0.57	-2.3
4,346,242	-		GFF4344	0.59	-0.2
4,346,256	+		GFF4344	0.60	+0.4
4,346,256	+		GFF4344	0.60	-0.5
4,346,256	+		GFF4344	0.60	-1.7
4,346,256	+		GFF4344	0.60	-0.2
4,346,264	-		GFF4344	0.61	-1.6
4,346,264	-		GFF4344	0.61	+0.8
4,346,264	-		GFF4344	0.61	+0.4
4,346,275	+		GFF4344	0.62	+1.2
4,346,275	+		GFF4344	0.62	+0.9
4,346,277	+		GFF4344	0.62	-1.4
4,346,277	+		GFF4344	0.62	-0.5
4,346,277	+		GFF4344	0.62	-1.0
4,346,277	+		GFF4344	0.62	-0.8
4,346,281	+		GFF4344	0.62	+1.4
4,346,281	-		GFF4344	0.62	+0.2
4,346,283	-		GFF4344	0.62	+0.2
4,346,283	-		GFF4344	0.62	-0.3
4,346,283	-		GFF4344	0.62	-0.4
4,346,285	-		GFF4344	0.63	+0.8
4,346,285	-		GFF4344	0.63	-0.7
4,346,285	-		GFF4344	0.63	-1.9
4,346,290	-		GFF4344	0.63	-2.2
4,346,327	+		GFF4344	0.66	-0.5
4,346,335	-		GFF4344	0.66	-1.6
4,346,337	+		GFF4344	0.67	-0.2
4,346,337	+		GFF4344	0.67	-0.0
4,346,345	-		GFF4344	0.67	-0.4
4,346,347	+		GFF4344	0.67	-0.5
4,346,355	-		GFF4344	0.68	-0.6
4,346,355	-		GFF4344	0.68	+0.2
4,346,361	-		GFF4344	0.68	-1.0
4,346,368	+		GFF4344	0.69	+1.1
4,346,370	-		GFF4344	0.69	-0.2
4,346,377	+		GFF4344	0.70	+0.2
4,346,385	-		GFF4344	0.70	-1.0
4,346,390	-		GFF4344	0.71	-1.8
4,346,393	+		GFF4344	0.71	-0.3
4,346,393	+		GFF4344	0.71	-0.3
4,346,393	-		GFF4344	0.71	-0.3
4,346,401	-		GFF4344	0.72	-0.2
4,346,401	-		GFF4344	0.72	-1.9
4,346,401	-		GFF4344	0.72	-0.5
4,346,439	-		GFF4344	0.74	+0.2
4,346,448	+		GFF4344	0.75	+0.5
4,346,455	+		GFF4344	0.76	-0.4
4,346,458	+		GFF4344	0.76	-0.8
4,346,472	-		GFF4344	0.77	-0.2
4,346,481	+		GFF4344	0.78	-0.6
4,346,491	-		GFF4344	0.78	+0.4
4,346,496	+		GFF4344	0.79	-0.5
4,346,496	+		GFF4344	0.79	+0.4
4,346,497	+		GFF4344	0.79	-0.0
4,346,506	+		GFF4344	0.80	+0.6
4,346,514	+		GFF4344	0.80	+0.2
4,346,514	+		GFF4344	0.80	-0.3
4,346,522	-		GFF4344	0.81	+0.0
4,346,522	-		GFF4344	0.81	-0.2
4,346,522	-		GFF4344	0.81	+0.1
4,346,532	+		GFF4344	0.82	+0.7
4,346,540	-		GFF4344	0.82	-1.1
4,346,544	+		GFF4344	0.83	+0.1
4,346,552	-		GFF4344	0.83	-0.4
4,346,587	-		GFF4344	0.86	-0.2
4,346,590	+		GFF4344	0.86	+0.0
4,346,593	-		GFF4344	0.86	-0.1
4,346,595	+		GFF4344	0.86	-0.7
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