Strain Fitness in Sphingobium sp. HT1-2 around GFF4258

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,273,243	-		GFF4256	0.63	-1.9
4,273,259	+		GFF4256	0.66	-0.1
4,273,259	+		GFF4256	0.66	-0.5
4,273,278	+		GFF4256	0.70	+0.6
4,273,278	+		GFF4256	0.70	-2.0
4,273,278	+		GFF4256	0.70	+0.6
4,273,286	+		GFF4256	0.71	+0.4
4,273,286	-		GFF4256	0.71	+0.2
4,273,315	+		GFF4256	0.77	-1.2
4,273,315	+		GFF4256	0.77	-0.9
4,273,315	+		GFF4256	0.77	-2.2
4,273,315	+		GFF4256	0.77	+0.4
4,273,315	+		GFF4256	0.77	+0.1
4,273,315	+		GFF4256	0.77	-0.2
4,273,321	+		GFF4256	0.78	-1.7
4,273,323	-		GFF4256	0.78	+0.9
4,273,323	-		GFF4256	0.78	-0.7
4,273,323	-		GFF4256	0.78	+1.4
4,273,344	-		GFF4256	0.82	+0.6
4,273,350	-		GFF4256	0.83	-0.6
4,273,352	+		GFF4256	0.84	-1.1
4,273,365	-		GFF4256	0.86	+0.6
4,273,406	+				+0.4
4,273,406	+				-0.2
4,273,411	+				-0.3
4,273,411	+				-0.6
4,273,411	+				+1.1
4,273,411	+				-0.4
4,273,411	+				-1.3
4,273,411	+				-2.2
4,273,411	+				+0.4
4,273,411	+				+0.4
4,273,411	+				-0.3
4,273,411	+				-0.2
4,273,411	+				-1.7
4,273,411	+				+0.2
4,273,411	+				-0.0
4,273,411	+				+1.5
4,273,411	+				+0.1
4,273,411	+				+0.3
4,273,411	+				+0.1
4,273,411	+				-0.6
4,273,411	+				-0.6
4,273,411	+				+0.4
4,273,411	+				-1.5
4,273,411	+				-1.2
4,273,411	+				+0.8
4,273,411	+				-0.3
4,273,411	+				+0.7
4,273,411	+				-0.9
4,273,411	+				+1.1
4,273,411	+				-0.4
4,273,412	-				-1.2
4,273,414	-				+0.5
4,273,414	-				-2.2
4,273,419	-				-0.7
4,273,419	-				-0.2
4,273,419	-				-0.8
4,273,419	-				-0.0
4,273,419	-				+0.6
4,273,419	-				-0.1
4,273,419	-				+0.2
4,273,419	-				-0.8
4,273,419	-				-1.4
4,273,419	-				-0.4
4,273,419	-				+1.0
4,273,419	-				-0.2
4,273,419	-				-1.7
4,273,419	-				-0.1
4,273,419	-				-0.1
4,273,419	-				-0.8
4,273,419	-				-0.5
4,273,419	-				+0.0
4,273,419	-				-3.2
4,273,419	-				+0.6
4,273,419	-				-0.1
4,273,419	-				-0.6
4,273,419	-				-0.9
4,273,419	-				+0.2
4,273,419	-				-0.1
4,273,419	-				+0.5
4,273,436	+				+0.8
4,273,436	+				-0.4
4,273,438	+				-1.4
4,273,446	+				-1.4
4,273,454	-				-2.8
4,273,454	-				-0.3
4,273,457	+				+0.7
4,273,464	-				+0.4
4,273,465	+				-0.9
4,273,517	-				+0.6
4,273,607	+				+0.9
4,273,607	+				-0.1
4,273,611	+				+1.4
4,273,640	+				-1.1
4,273,689	+		GFF4257	0.14	+0.6
4,273,701	-		GFF4257	0.16	-0.0
4,273,707	+		GFF4257	0.18	+0.3
4,273,715	-		GFF4257	0.19	-0.7
4,273,721	-		GFF4257	0.21	+1.3
4,273,725	+		GFF4257	0.21	-0.2
4,273,728	-		GFF4257	0.22	+0.7
4,273,729	-		GFF4257	0.22	+0.3
4,273,733	-		GFF4257	0.23	-0.1
4,273,733	-		GFF4257	0.23	+0.8
4,273,761	+		GFF4257	0.29	-0.8
4,273,761	+		GFF4257	0.29	+0.9
4,273,761	+		GFF4257	0.29	-0.6
4,273,761	+		GFF4257	0.29	-0.4
4,273,761	+		GFF4257	0.29	+1.2
4,273,769	-		GFF4257	0.31	+0.4
4,273,769	-		GFF4257	0.31	+0.1
4,273,769	-		GFF4257	0.31	+1.8
4,273,769	-		GFF4257	0.31	-0.0
4,273,775	-		GFF4257	0.32	+0.4
4,273,777	+		GFF4257	0.32	-0.3
4,273,779	+		GFF4257	0.33	-1.5
4,273,784	+		GFF4257	0.34	-0.6
4,273,784	+		GFF4257	0.34	-0.6
4,273,789	+		GFF4257	0.35	-0.3
4,273,789	+		GFF4257	0.35	+0.2
4,273,789	+		GFF4257	0.35	+0.5
4,273,789	+		GFF4257	0.35	-0.6
4,273,789	+		GFF4257	0.35	+0.4
4,273,789	+		GFF4257	0.35	+0.2
4,273,789	+		GFF4257	0.35	-0.1
4,273,789	+		GFF4257	0.35	-0.4
4,273,791	-		GFF4257	0.35	+0.1
4,273,797	-		GFF4257	0.37	-0.4
4,273,797	-		GFF4257	0.37	-1.5
4,273,797	-		GFF4257	0.37	+0.2
4,273,797	-		GFF4257	0.37	-0.2
4,273,797	-		GFF4257	0.37	-0.2
4,273,797	-		GFF4257	0.37	-1.7
4,273,797	-		GFF4257	0.37	-1.2
4,273,797	-		GFF4257	0.37	+0.5
4,273,800	+		GFF4257	0.37	+0.8
4,273,800	+		GFF4257	0.37	+0.6
4,273,816	+		GFF4257	0.41	-1.0
4,273,816	+		GFF4257	0.41	-0.0
4,273,820	-		GFF4257	0.42	+1.2
4,273,824	-		GFF4257	0.43	-0.3
4,273,824	-		GFF4257	0.43	-0.1
4,273,832	+		GFF4257	0.44	+0.4
4,273,840	-		GFF4257	0.46	+0.9
4,273,883	-		GFF4257	0.55	-1.4
4,274,055	+				-0.9
4,274,055	+				+0.3
4,274,055	+				-1.9
4,274,055	+				+1.0
4,274,055	+				-0.7
4,274,055	+				+0.5
4,274,055	+				-0.9
4,274,055	+				+0.1
4,274,055	+				-0.2
4,274,055	+				-1.0
4,274,055	+				-0.8
4,274,055	+				-1.4
4,274,055	+				-1.6
4,274,055	+				+0.8
4,274,055	+				+0.8
4,274,055	+				+0.1
4,274,055	+				-2.0
4,274,065	+				-0.2
4,274,091	+				-0.4
4,274,100	-				+1.2
4,274,106	+				+0.6
4,274,146	+				+1.3
4,274,150	-				+0.7
4,274,156	+				+0.9
4,274,156	+				+0.4
4,274,490	-		GFF4258	0.79	+1.0
4,274,518	+		GFF4258	0.88	-0.9
4,274,518	+		GFF4258	0.88	-2.4
4,274,526	-				-1.9
4,274,526	-				+0.0
4,274,535	-				+0.6
4,274,537	-				+0.1
4,274,537	-				+0.0
4,274,552	+				-1.4
4,274,558	+				+1.2
4,274,560	+				+0.0
4,274,566	-				-0.2
4,274,578	+				-1.1
4,274,578	+				-0.4
4,274,578	+				+0.8
4,274,578	+				-1.5
4,274,578	+				-1.2
4,274,578	+				-1.0
4,274,578	+				+1.5
4,274,578	-				-1.4
4,274,584	+				-1.2
4,274,584	-				-1.2
4,274,586	-				+1.2
4,274,586	-				-1.0
4,274,586	-				-1.4
4,274,586	-				+1.5
4,274,612	-				+0.8
4,274,613	+				-1.6
4,274,613	-				-0.9
4,274,613	-				+0.9
4,274,626	+				+0.7
4,274,630	+				-0.8
4,274,630	+				-0.1
4,274,630	+				+1.0
4,274,631	+				+1.3
4,274,636	-				-0.1
4,274,636	-				+0.1
4,274,638	-				-0.2
4,274,639	-				-0.2
4,274,656	-				-1.4
4,274,664	+				+0.4
4,274,674	+				-2.2
4,274,686	+				+0.5
4,274,693	+				-0.2
4,274,694	-				-0.3
4,274,701	-				-2.2
4,274,701	-				-0.5
4,274,718	+				-0.3
4,274,718	+				-0.5
4,274,719	+				-0.5
4,274,727	-				-0.9
4,274,727	-				+1.5
4,274,727	-				-2.5
4,274,727	-				-1.6
4,274,737	+				-0.6
4,274,745	-				+0.6
4,274,745	-				+0.1
4,274,745	-				+0.9
4,274,745	-				-0.4
4,274,752	-				-0.7
4,274,766	+				-0.6
4,274,767	-				-1.5
4,274,774	-				-0.1
4,274,774	-				-0.8
4,274,774	-				-0.2
4,274,774	-				+0.5
4,274,800	-				+1.1
4,274,808	+				-2.1
4,274,808	+				-0.4
4,274,808	+				+0.2
4,274,816	-				-0.0
4,274,816	-				-0.4
4,274,848	+				+0.0
4,274,848	+				-0.2
4,274,851	-				+0.9
4,274,851	-				-1.6
4,274,856	-				-1.0
4,274,856	-				-0.2
4,274,856	-				-0.1
4,274,858	-				+0.3
4,274,878	+				-1.4
4,274,911	-				-0.2
4,274,912	+				-0.1
4,274,912	+				+0.5
4,274,912	+				-1.2
4,274,912	+				-0.5
4,274,912	+				+0.3
4,274,912	+				+0.6
4,274,912	+				-0.1
4,274,912	+				-0.2
4,274,912	+				-0.7
4,274,913	-				-1.2
4,274,913	-				-1.0
4,274,913	-				+0.6
4,274,920	-				-0.4
4,274,920	-				+0.2
4,274,943	-				-1.9
4,274,956	-		GFF4259	0.10	-1.8
4,274,981	-		GFF4259	0.14	-1.1
4,274,988	+		GFF4259	0.14	-1.0
4,275,007	+		GFF4259	0.17	-0.4
4,275,007	+		GFF4259	0.17	-1.9
4,275,007	+		GFF4259	0.17	-2.3
4,275,007	+		GFF4259	0.17	+1.6
4,275,015	-		GFF4259	0.18	+0.1
4,275,017	-		GFF4259	0.18	+0.2
4,275,037	-		GFF4259	0.21	-0.7
4,275,053	+		GFF4259	0.23	-0.2
4,275,053	+		GFF4259	0.23	-0.3
4,275,054	+		GFF4259	0.23	-1.2
4,275,061	-		GFF4259	0.24	-0.2
4,275,061	-		GFF4259	0.24	+0.7
4,275,064	+		GFF4259	0.25	-1.1
4,275,084	-		GFF4259	0.27	-0.4
4,275,087	+		GFF4259	0.28	-0.2
4,275,096	-		GFF4259	0.29	-1.7
4,275,096	-		GFF4259	0.29	+0.4
4,275,098	+		GFF4259	0.29	+0.2
4,275,106	-		GFF4259	0.30	+0.9
4,275,110	+		GFF4259	0.31	+0.0
4,275,120	+		GFF4259	0.32	+0.8
4,275,120	+		GFF4259	0.32	-0.2
4,275,120	+		GFF4259	0.32	+1.4
4,275,120	+		GFF4259	0.32	-1.5
4,275,120	+		GFF4259	0.32	-0.8
4,275,128	-		GFF4259	0.33	-0.8
4,275,128	-		GFF4259	0.33	+0.8
4,275,128	-		GFF4259	0.33	+0.0
4,275,128	-		GFF4259	0.33	+1.0
4,275,128	-		GFF4259	0.33	-1.0
4,275,128	-		GFF4259	0.33	-0.2
4,275,128	-		GFF4259	0.33	+0.1
4,275,128	-		GFF4259	0.33	-0.2
4,275,128	-		GFF4259	0.33	+1.1
4,275,128	-		GFF4259	0.33	-1.0
4,275,149	-		GFF4259	0.36	+0.5
4,275,177	-		GFF4259	0.40	+0.2
4,275,205	+		GFF4259	0.44	+1.8
4,275,205	+		GFF4259	0.44	-1.5
4,275,205	+		GFF4259	0.44	-1.4
4,275,205	+		GFF4259	0.44	+0.5
4,275,205	+		GFF4259	0.44	+0.1
4,275,213	+		GFF4259	0.45	-0.1
4,275,213	-		GFF4259	0.45	+0.6
4,275,213	-		GFF4259	0.45	-0.4
4,275,228	+		GFF4259	0.47	-1.9
4,275,228	+		GFF4259	0.47	-1.5
4,275,228	+		GFF4259	0.47	+1.2
4,275,228	+		GFF4259	0.47	+0.2
4,275,233	+		GFF4259	0.47	+1.1
4,275,233	+		GFF4259	0.47	-0.9
4,275,233	+		GFF4259	0.47	-0.1
4,275,236	-		GFF4259	0.48	-0.0
4,275,236	-		GFF4259	0.48	+0.2
4,275,236	-		GFF4259	0.48	-0.8
4,275,236	-		GFF4259	0.48	+0.2
4,275,238	+		GFF4259	0.48	-0.1
4,275,238	+		GFF4259	0.48	-0.6
4,275,241	-		GFF4259	0.48	-0.8
4,275,246	-		GFF4259	0.49	-0.2
4,275,246	-		GFF4259	0.49	-0.1
4,275,246	-		GFF4259	0.49	-0.6
4,275,246	-		GFF4259	0.49	-1.6
4,275,248	+		GFF4259	0.49	+0.8
4,275,248	+		GFF4259	0.49	-0.7
4,275,251	-		GFF4259	0.50	+0.7
4,275,256	-		GFF4259	0.50	-1.9
4,275,256	-		GFF4259	0.50	-0.4
4,275,256	-		GFF4259	0.50	+0.6
4,275,265	-		GFF4259	0.52	-0.9
4,275,267	+		GFF4259	0.52	-0.4
4,275,290	+		GFF4259	0.55	+0.3
4,275,292	+		GFF4259	0.55	-1.0
4,275,300	-		GFF4259	0.56	+1.1
4,275,303	-		GFF4259	0.57	-0.4
4,275,308	-		GFF4259	0.57	-2.4
4,275,329	+		GFF4259	0.60	+0.2
4,275,344	+		GFF4259	0.62	+0.3
4,275,349	+		GFF4259	0.63	+0.2
4,275,359	+		GFF4259	0.64	-1.5
4,275,361	+		GFF4259	0.64	+1.4
4,275,361	+		GFF4259	0.64	-0.1
4,275,361	+		GFF4259	0.64	+0.0
4,275,369	-		GFF4259	0.65	+0.5
4,275,369	-		GFF4259	0.65	-0.1
4,275,377	+		GFF4259	0.67	-0.4
4,275,385	-		GFF4259	0.68	-1.0
4,275,385	-		GFF4259	0.68	-1.8
4,275,417	+		GFF4259	0.72	-1.8
4,275,430	+		GFF4259	0.74	-0.8
4,275,440	+		GFF4259	0.75	+0.4
4,275,440	+		GFF4259	0.75	-1.4
4,275,440	+		GFF4259	0.75	-1.5
4,275,440	+		GFF4259	0.75	+0.4
4,275,447	+		GFF4259	0.76	+0.9
4,275,447	+		GFF4259	0.76	+0.8
4,275,447	+		GFF4259	0.76	-0.0
4,275,447	+		GFF4259	0.76	+0.0
4,275,448	-		GFF4259	0.76	+1.0
4,275,449	-		GFF4259	0.76	+0.5
4,275,455	-		GFF4259	0.77	-0.9
4,275,455	-		GFF4259	0.77	-0.3
4,275,455	-		GFF4259	0.77	-1.9
4,275,455	-		GFF4259	0.77	-0.6
4,275,460	-		GFF4259	0.78	+0.9
4,275,465	-		GFF4259	0.78	-0.3
4,275,470	-		GFF4259	0.79	-0.8
4,275,475	+		GFF4259	0.80	-0.8
4,275,503	-		GFF4259	0.83	-1.9
4,275,509	+		GFF4259	0.84	+1.0
4,275,517	-		GFF4259	0.85	+0.2
4,275,548	+		GFF4259	0.89	-0.1
4,275,548	+		GFF4259	0.89	-1.7
4,275,556	-				-0.9