Strain Fitness in Sphingobium sp. HT1-2 around GFF4252

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,269,147	+		GFF4250	0.50	+0.4
4,269,147	+		GFF4250	0.50	-0.8
4,269,147	+		GFF4250	0.50	+0.0
4,269,147	+		GFF4250	0.50	+0.8
4,269,147	+		GFF4250	0.50	-0.6
4,269,147	+		GFF4250	0.50	-0.5
4,269,147	+		GFF4250	0.50	+0.9
4,269,147	+		GFF4250	0.50	+0.3
4,269,155	-		GFF4250	0.52	+0.6
4,269,155	-		GFF4250	0.52	+1.3
4,269,155	-		GFF4250	0.52	-0.5
4,269,156	-		GFF4250	0.52	-0.9
4,269,160	-		GFF4250	0.53	+1.4
4,269,165	-		GFF4250	0.54	-0.4
4,269,193	+		GFF4250	0.59	-0.8
4,269,235	+		GFF4250	0.68	-1.7
4,269,240	-		GFF4250	0.69	-0.2
4,269,252	+		GFF4250	0.71	+1.6
4,269,258	-		GFF4250	0.72	-0.1
4,269,258	-		GFF4250	0.72	+0.1
4,269,258	-		GFF4250	0.72	+0.2
4,269,262	+		GFF4250	0.73	+0.1
4,269,264	+		GFF4250	0.73	-0.7
4,269,272	-		GFF4250	0.75	+0.5
4,269,272	-		GFF4250	0.75	-0.1
4,269,277	-		GFF4250	0.76	+0.5
4,269,316	+		GFF4250	0.84	-2.1
4,269,319	+		GFF4250	0.84	-0.7
4,269,324	+		GFF4250	0.85	+0.2
4,269,327	-		GFF4250	0.86	+1.1
4,269,329	+		GFF4250	0.86	+0.2
4,269,373	+				-0.2
4,269,381	-				-1.8
4,269,381	-				-0.6
4,269,381	-				-0.1
4,269,386	-				+0.4
4,269,406	-				-0.0
4,269,408	+				+0.6
4,269,416	-				-0.9
4,269,426	+				-0.2
4,269,426	+				-0.2
4,269,426	+				+0.8
4,269,426	+				-1.2
4,269,427	-				+0.0
4,269,434	-				-1.6
4,269,438	+				-0.8
4,269,439	-				+0.3
4,269,444	+				-1.4
4,269,452	-				-0.9
4,269,452	-				-2.1
4,269,452	-				-0.4
4,269,453	-				-1.2
4,269,468	-				-0.1
4,269,469	+				-1.8
4,269,469	+				+1.0
4,269,477	-				-1.3
4,269,493	+				-1.4
4,269,506	+				-1.3
4,269,511	+		GFF4251	0.11	+0.1
4,269,511	+		GFF4251	0.11	-0.2
4,269,511	+		GFF4251	0.11	+0.9
4,269,514	-		GFF4251	0.11	-1.3
4,269,516	+		GFF4251	0.11	+0.7
4,269,519	+		GFF4251	0.12	+0.6
4,269,519	-		GFF4251	0.12	-0.4
4,269,519	-		GFF4251	0.12	-1.0
4,269,564	+		GFF4251	0.18	-2.3
4,269,583	-		GFF4251	0.21	+0.8
4,269,598	+		GFF4251	0.23	+0.2
4,269,598	+		GFF4251	0.23	-1.0
4,269,606	-		GFF4251	0.24	+0.8
4,269,606	-		GFF4251	0.24	-0.4
4,269,606	-		GFF4251	0.24	+0.0
4,269,606	-		GFF4251	0.24	+0.2
4,269,606	-		GFF4251	0.24	-0.6
4,269,606	-		GFF4251	0.24	-0.9
4,269,624	+		GFF4251	0.27	-0.5
4,269,632	-		GFF4251	0.28	+0.8
4,269,658	+		GFF4251	0.31	+0.2
4,269,663	+		GFF4251	0.32	-0.1
4,269,666	-		GFF4251	0.33	+0.0
4,269,667	+		GFF4251	0.33	+0.6
4,269,671	-		GFF4251	0.33	-1.3
4,269,675	-		GFF4251	0.34	+0.2
4,269,676	-		GFF4251	0.34	+0.5
4,269,682	+		GFF4251	0.35	+0.4
4,269,682	+		GFF4251	0.35	+0.1
4,269,685	-		GFF4251	0.35	-1.7
4,269,695	-		GFF4251	0.37	+0.1
4,269,701	-		GFF4251	0.38	+1.1
4,269,710	-		GFF4251	0.39	+0.9
4,269,718	+		GFF4251	0.40	+0.2
4,269,728	+		GFF4251	0.41	+0.3
4,269,733	+		GFF4251	0.42	-1.9
4,269,736	-		GFF4251	0.43	-1.4
4,269,741	-		GFF4251	0.43	-0.3
4,269,743	+		GFF4251	0.44	+0.2
4,269,760	+		GFF4251	0.46	-0.4
4,269,763	-		GFF4251	0.46	-0.2
4,269,765	+		GFF4251	0.47	-0.6
4,269,768	-		GFF4251	0.47	+0.7
4,269,773	-		GFF4251	0.48	-1.3
4,269,776	-		GFF4251	0.48	-0.9
4,269,787	+		GFF4251	0.50	-1.1
4,269,808	-		GFF4251	0.53	+0.8
4,269,811	+		GFF4251	0.53	-1.9
4,269,811	+		GFF4251	0.53	+0.1
4,269,819	-		GFF4251	0.54	+0.6
4,269,819	-		GFF4251	0.54	+0.2
4,269,819	-		GFF4251	0.54	+0.0
4,269,819	-		GFF4251	0.54	+0.8
4,269,827	+		GFF4251	0.55	+0.6
4,269,847	+		GFF4251	0.58	-0.3
4,269,847	+		GFF4251	0.58	-0.2
4,269,854	+		GFF4251	0.59	+0.3
4,269,855	+		GFF4251	0.59	-0.6
4,269,855	-		GFF4251	0.59	-2.2
4,269,863	-		GFF4251	0.61	+0.6
4,269,864	+		GFF4251	0.61	-0.6
4,269,868	+		GFF4251	0.61	-0.2
4,269,880	+		GFF4251	0.63	-0.7
4,269,885	+		GFF4251	0.64	-0.1
4,269,895	+		GFF4251	0.65	-1.7
4,269,903	-		GFF4251	0.66	+0.5
4,269,903	-		GFF4251	0.66	-2.0
4,269,904	+		GFF4251	0.66	-0.7
4,269,904	+		GFF4251	0.66	-0.5
4,269,904	+		GFF4251	0.66	-0.0
4,269,912	-		GFF4251	0.68	+0.1
4,269,916	+		GFF4251	0.68	-0.0
4,269,919	-		GFF4251	0.69	+0.3
4,269,921	+		GFF4251	0.69	-0.3
4,269,925	-		GFF4251	0.69	-1.9
4,269,926	+		GFF4251	0.70	+0.4
4,269,926	+		GFF4251	0.70	+0.4
4,269,929	-		GFF4251	0.70	-2.5
4,269,932	-		GFF4251	0.70	-0.1
4,269,940	-		GFF4251	0.71	-2.5
4,269,945	+		GFF4251	0.72	+0.2
4,269,945	-		GFF4251	0.72	+0.0
4,270,002	-		GFF4251	0.80	+0.1
4,270,018	+		GFF4251	0.83	-0.5
4,270,053	+		GFF4251	0.88	-0.2
4,270,055	+		GFF4251	0.88	-1.6
4,270,129	+				-0.3
4,270,145	-				-0.7
4,270,149	+				-0.9
4,270,152	-				-0.3
4,270,157	+				-1.0
4,270,157	-				+0.5
4,270,157	-				-0.4
4,270,157	-				+1.5
4,270,183	-				-1.8
4,270,183	-				-0.4
4,270,183	-				+0.3
4,270,193	-				-0.1
4,270,200	+				+1.8
4,270,200	+				+0.8
4,270,208	-				-0.2
4,270,208	-				-0.2
4,270,208	-				-2.4
4,270,208	-				-0.2
4,270,208	-				-1.4
4,270,208	-				+0.5
4,270,212	+				-0.6
4,270,212	+				-0.0
4,270,220	-				-0.5
4,270,221	-				-0.6
4,270,229	-				+0.7
4,270,234	-				+0.5
4,270,243	+				+0.5
4,270,252	-				+0.5
4,270,252	-				+0.4
4,270,252	-				+0.7
4,270,261	+		GFF4252	0.10	-1.9
4,270,261	+		GFF4252	0.10	-0.9
4,270,266	+		GFF4252	0.11	-1.2
4,270,274	-		GFF4252	0.11	+0.7
4,270,284	+		GFF4252	0.12	-0.4
4,270,284	+		GFF4252	0.12	+0.3
4,270,292	-		GFF4252	0.13	+0.4
4,270,317	-		GFF4252	0.15	+0.1
4,270,334	+		GFF4252	0.17	-1.9
4,270,336	-		GFF4252	0.17	+0.8
4,270,349	-		GFF4252	0.18	-0.1
4,270,351	+		GFF4252	0.18	+0.5
4,270,351	+		GFF4252	0.18	+0.9
4,270,359	-		GFF4252	0.19	-0.2
4,270,367	+		GFF4252	0.20	-1.1
4,270,372	+		GFF4252	0.20	+0.1
4,270,379	-		GFF4252	0.21	+1.2
4,270,379	-		GFF4252	0.21	+0.5
4,270,379	-		GFF4252	0.21	+0.5
4,270,380	-		GFF4252	0.21	+1.1
4,270,380	-		GFF4252	0.21	-1.2
4,270,398	-		GFF4252	0.22	+0.3
4,270,398	-		GFF4252	0.22	-2.0
4,270,410	+		GFF4252	0.23	-1.7
4,270,414	+		GFF4252	0.24	-0.4
4,270,414	+		GFF4252	0.24	+0.0
4,270,414	+		GFF4252	0.24	-1.4
4,270,414	+		GFF4252	0.24	+0.1
4,270,414	+		GFF4252	0.24	-0.9
4,270,415	+		GFF4252	0.24	-0.4
4,270,422	-		GFF4252	0.25	-0.3
4,270,458	-		GFF4252	0.28	+0.4
4,270,485	+		GFF4252	0.30	+1.2
4,270,522	-		GFF4252	0.33	+0.6
4,270,524	+		GFF4252	0.34	+0.5
4,270,530	+		GFF4252	0.34	+0.0
4,270,530	+		GFF4252	0.34	-1.8
4,270,530	+		GFF4252	0.34	+1.3
4,270,538	-		GFF4252	0.35	+0.5
4,270,538	-		GFF4252	0.35	-0.7
4,270,538	-		GFF4252	0.35	-0.3
4,270,548	-		GFF4252	0.36	+0.1
4,270,549	+		GFF4252	0.36	-0.7
4,270,562	-		GFF4252	0.37	-0.7
4,270,562	-		GFF4252	0.37	-1.9
4,270,562	-		GFF4252	0.37	+1.1
4,270,564	+		GFF4252	0.37	+0.2
4,270,564	+		GFF4252	0.37	+0.0
4,270,570	-		GFF4252	0.38	-0.4
4,270,582	-		GFF4252	0.39	-1.7
4,270,588	+		GFF4252	0.39	-0.9
4,270,596	+		GFF4252	0.40	+0.2
4,270,601	+		GFF4252	0.40	+0.7
4,270,601	+		GFF4252	0.40	-0.4
4,270,601	+		GFF4252	0.40	+0.1
4,270,601	+		GFF4252	0.40	-0.0
4,270,601	+		GFF4252	0.40	+0.2
4,270,609	-		GFF4252	0.41	+0.1
4,270,609	-		GFF4252	0.41	-0.1
4,270,633	-		GFF4252	0.43	+0.9
4,270,641	-		GFF4252	0.44	+0.8
4,270,678	+		GFF4252	0.47	-0.2
4,270,678	+		GFF4252	0.47	+0.4
4,270,686	-		GFF4252	0.48	+1.0
4,270,720	+		GFF4252	0.51	-2.0
4,270,746	-		GFF4252	0.53	-0.9
4,270,746	-		GFF4252	0.53	+0.9
4,270,751	-		GFF4252	0.54	-0.3
4,270,757	-		GFF4252	0.54	+0.1
4,270,757	-		GFF4252	0.54	-0.4
4,270,758	+		GFF4252	0.54	+1.9
4,270,771	-		GFF4252	0.56	-1.8
4,270,785	-		GFF4252	0.57	-1.5
4,270,786	+		GFF4252	0.57	-0.0
4,270,800	+		GFF4252	0.58	-1.9
4,270,800	+		GFF4252	0.58	+0.4
4,270,803	-		GFF4252	0.58	+0.3
4,270,808	-		GFF4252	0.59	-0.6
4,270,808	-		GFF4252	0.59	-0.9
4,270,818	+		GFF4252	0.60	-1.2
4,270,818	+		GFF4252	0.60	-0.9
4,270,820	+		GFF4252	0.60	-0.4
4,270,820	-		GFF4252	0.60	-0.4
4,270,827	-		GFF4252	0.61	-0.1
4,270,827	-		GFF4252	0.61	-0.8
4,270,827	-		GFF4252	0.61	-0.1
4,270,827	-		GFF4252	0.61	-0.8
4,270,838	+		GFF4252	0.62	-0.5
4,270,838	+		GFF4252	0.62	+2.0
4,270,865	-		GFF4252	0.64	-0.6
4,270,867	+		GFF4252	0.64	+0.1
4,270,884	+		GFF4252	0.66	-2.7
4,270,903	+		GFF4252	0.67	+0.2
4,270,921	+		GFF4252	0.69	+1.7
4,270,950	-		GFF4252	0.72	-0.5
4,270,983	-		GFF4252	0.75	-1.4
4,270,996	+		GFF4252	0.76	-0.7
4,270,996	+		GFF4252	0.76	-1.6
4,270,999	-		GFF4252	0.76	+0.4
4,271,004	-		GFF4252	0.76	-1.8
4,271,004	-		GFF4252	0.76	+0.2
4,271,018	-		GFF4252	0.78	+1.1
4,271,039	-		GFF4252	0.80	-1.9
4,271,039	-		GFF4252	0.80	-0.7
4,271,040	+		GFF4252	0.80	+0.8
4,271,041	+		GFF4252	0.80	-0.9
4,271,041	+		GFF4252	0.80	-0.1
4,271,041	+		GFF4252	0.80	-0.1
4,271,048	-		GFF4252	0.80	-0.9
4,271,049	-		GFF4252	0.80	+0.2
4,271,049	-		GFF4252	0.80	-0.2
4,271,049	-		GFF4252	0.80	+0.7
4,271,054	-		GFF4252	0.81	+0.9
4,271,089	+		GFF4252	0.84	-1.2
4,271,102	+		GFF4252	0.85	+0.6
4,271,102	+		GFF4252	0.85	-0.2
4,271,104	+		GFF4252	0.85	-0.8
4,271,110	-		GFF4252	0.86	-0.7
4,271,117	-		GFF4252	0.86	-0.8
4,271,117	-		GFF4252	0.86	-1.4
4,271,143	+		GFF4252	0.89	-0.8
4,271,166	-				-1.7
4,271,176	-				+0.5
4,271,181	-				-0.7
4,271,191	+				-1.8
4,271,191	-				-0.1
4,271,193	+				+0.5
4,271,193	+				+0.7
4,271,193	+				-0.4
4,271,198	+				+0.5
4,271,198	+				-0.4
4,271,199	+				-0.4
4,271,199	+				+0.8
4,271,200	+				-2.6
4,271,200	-				+0.9
4,271,201	-				+0.5
4,271,201	-				+0.1
4,271,217	+				+0.7
4,271,234	+				+0.5
4,271,234	+				-0.5
4,271,234	+				-1.3
4,271,234	+				-0.2
4,271,242	-				-1.3
4,271,244	+				-0.2
4,271,248	+				-1.2
4,271,269	+				-0.4
4,271,286	+				-0.2
4,271,297	+				+0.2
4,271,300	-				-0.7
4,271,315	+				-0.0
4,271,322	-				-0.2
4,271,327	-				+0.3
4,271,340	-				-1.9
4,271,345	+				+0.1
4,271,355	+		GFF4253	0.12	-2.5
4,271,365	+		GFF4253	0.14	-0.8
4,271,365	+		GFF4253	0.14	-0.5
4,271,365	+		GFF4253	0.14	-1.2
4,271,365	+		GFF4253	0.14	-0.5
4,271,365	+		GFF4253	0.14	+1.2
4,271,365	+		GFF4253	0.14	+0.5
4,271,373	-		GFF4253	0.15	-1.8
4,271,373	-		GFF4253	0.15	-0.2
4,271,376	+		GFF4253	0.15	-0.4
4,271,403	+		GFF4253	0.20	+1.0
4,271,440	+		GFF4253	0.27	-0.5
4,271,450	-		GFF4253	0.29	+0.7
4,271,452	+		GFF4253	0.29	+0.0
4,271,460	-		GFF4253	0.31	-0.4
4,271,468	-		GFF4253	0.32	-0.8
4,271,521	-		GFF4253	0.42	+0.5
4,271,550	+		GFF4253	0.47	+1.4
4,271,550	+		GFF4253	0.47	+0.0
4,271,550	+		GFF4253	0.47	+0.8
4,271,558	-		GFF4253	0.48	-1.4
4,271,589	-		GFF4253	0.54	-0.2
4,271,603	+		GFF4253	0.56	-0.1
4,271,611	-		GFF4253	0.58	-0.3
4,271,611	-		GFF4253	0.58	+1.3
4,271,611	-		GFF4253	0.58	-0.2
4,271,622	+		GFF4253	0.60	+0.4
4,271,623	-		GFF4253	0.60	-0.5
4,271,629	+		GFF4253	0.61	+0.6
4,271,637	-		GFF4253	0.63	-0.3
4,271,644	+		GFF4253	0.64	+0.2
4,271,646	+		GFF4253	0.64	-2.6
4,271,654	-		GFF4253	0.66	-1.2
4,271,680	-		GFF4253	0.70	+0.2
4,271,682	+		GFF4253	0.71	+0.2
4,271,697	-		GFF4253	0.73	+0.1
4,271,709	-		GFF4253	0.75	+1.5
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