Strain Fitness in Sphingobium sp. HT1-2 around GFF4235

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,253,432	-		GFF4234	0.68	+0.2
4,253,434	+		GFF4234	0.68	-0.6
4,253,437	-		GFF4234	0.68	-1.2
4,253,445	-		GFF4234	0.68	-1.2
4,253,447	-		GFF4234	0.68	-1.0
4,253,447	-		GFF4234	0.68	+0.2
4,253,447	-		GFF4234	0.68	-0.3
4,253,462	-		GFF4234	0.69	-0.5
4,253,465	-		GFF4234	0.69	+0.4
4,253,468	+		GFF4234	0.69	-1.3
4,253,487	-		GFF4234	0.70	-0.9
4,253,510	+		GFF4234	0.71	-0.4
4,253,513	-		GFF4234	0.71	-0.8
4,253,518	-		GFF4234	0.71	-1.8
4,253,537	+		GFF4234	0.71	-0.8
4,253,550	+		GFF4234	0.72	+1.1
4,253,570	+		GFF4234	0.72	-1.8
4,253,575	+		GFF4234	0.73	-0.3
4,253,575	+		GFF4234	0.73	-2.1
4,253,575	+		GFF4234	0.73	+1.9
4,253,575	+		GFF4234	0.73	+1.2
4,253,580	+		GFF4234	0.73	+0.5
4,253,583	-		GFF4234	0.73	-0.2
4,253,583	-		GFF4234	0.73	-0.5
4,253,583	-		GFF4234	0.73	-0.5
4,253,583	-		GFF4234	0.73	-0.2
4,253,586	+		GFF4234	0.73	-1.5
4,253,602	+		GFF4234	0.73	-1.2
4,253,604	-		GFF4234	0.74	-1.8
4,253,611	-		GFF4234	0.74	-1.3
4,253,618	-		GFF4234	0.74	-1.3
4,253,620	+		GFF4234	0.74	-2.0
4,253,628	-		GFF4234	0.74	-2.3
4,253,628	-		GFF4234	0.74	-0.2
4,253,628	-		GFF4234	0.74	-0.4
4,253,628	-		GFF4234	0.74	+1.1
4,253,628	-		GFF4234	0.74	+0.5
4,253,655	-		GFF4234	0.75	-1.5
4,253,685	-		GFF4234	0.76	+0.8
4,253,685	-		GFF4234	0.76	+0.8
4,253,693	-		GFF4234	0.76	-0.9
4,253,719	+		GFF4234	0.77	-1.4
4,253,720	+		GFF4234	0.77	-0.3
4,253,720	+		GFF4234	0.77	+0.3
4,253,727	-		GFF4234	0.77	+0.5
4,253,728	-		GFF4234	0.78	-1.7
4,253,728	-		GFF4234	0.78	-1.1
4,253,728	-		GFF4234	0.78	-1.3
4,253,730	+		GFF4234	0.78	+0.2
4,253,730	+		GFF4234	0.78	-1.3
4,253,810	+		GFF4234	0.80	+0.5
4,253,810	+		GFF4234	0.80	-1.5
4,253,810	+		GFF4234	0.80	-1.1
4,253,810	+		GFF4234	0.80	+0.1
4,253,818	-		GFF4234	0.80	-0.7
4,253,818	-		GFF4234	0.80	+0.7
4,253,818	-		GFF4234	0.80	+0.4
4,253,818	-		GFF4234	0.80	-0.3
4,253,818	-		GFF4234	0.80	-0.8
4,253,818	-		GFF4234	0.80	+0.8
4,253,818	-		GFF4234	0.80	+0.7
4,253,818	-		GFF4234	0.80	-1.2
4,253,818	-		GFF4234	0.80	-1.6
4,253,818	-		GFF4234	0.80	-1.5
4,253,818	-		GFF4234	0.80	+0.2
4,253,831	-		GFF4234	0.81	-1.2
4,253,878	+		GFF4234	0.82	-0.6
4,253,881	-		GFF4234	0.82	-1.0
4,253,886	-		GFF4234	0.83	-0.0
4,253,989	+		GFF4234	0.86	+0.2
4,253,990	+		GFF4234	0.86	-0.3
4,253,991	-		GFF4234	0.86	-1.3
4,254,001	+		GFF4234	0.86	-0.6
4,254,009	-		GFF4234	0.87	+1.0
4,254,076	-		GFF4234	0.89	-1.2
4,254,130	+				-1.5
4,254,138	-				-0.5
4,254,151	+				-0.3
4,254,151	+				+0.2
4,254,159	-				-0.6
4,254,159	-				-0.8
4,254,159	-				+0.4
4,254,171	-				-1.0
4,254,172	+				-0.4
4,254,192	+				-1.8
4,254,278	+				+1.1
4,254,278	+				-0.6
4,254,296	-				-0.8
4,254,296	-				-0.7
4,254,296	-				+0.5
4,254,301	+				-1.2
4,254,301	+				+0.4
4,254,309	-				-0.3
4,254,309	-				-1.3
4,254,309	-				-1.3
4,254,309	-				+0.1
4,254,321	+				-1.7
4,254,324	-				+1.4
4,254,327	-				-1.2
4,254,356	+				-1.2
4,254,361	+				-1.1
4,254,364	-				-1.5
4,254,399	-				+0.8
4,254,406	-				+0.3
4,254,406	-				+1.1
4,254,429	+				-0.4
4,254,481	+				+0.8
4,254,495	-				-0.2
4,254,495	-				-0.7
4,254,495	-				-0.3
4,254,495	-				-1.5
4,254,495	-				-1.7
4,254,495	-				-1.5
4,254,504	+				-1.0
4,254,513	-				-1.5
4,254,520	+				-1.2
4,254,528	-				-1.4
4,254,548	-				+0.0
4,254,617	-		GFF4235	0.10	+0.0
4,254,632	+		GFF4235	0.11	-0.8
4,254,640	-		GFF4235	0.12	-1.8
4,254,667	-		GFF4235	0.13	-0.8
4,254,667	-		GFF4235	0.13	-0.7
4,254,667	-		GFF4235	0.13	-1.3
4,254,667	-		GFF4235	0.13	-1.5
4,254,669	-		GFF4235	0.13	-1.8
4,254,706	+		GFF4235	0.15	-0.3
4,254,726	+		GFF4235	0.17	-1.9
4,254,750	+		GFF4235	0.18	-2.3
4,254,750	+		GFF4235	0.18	-1.8
4,254,750	+		GFF4235	0.18	-1.3
4,254,750	+		GFF4235	0.18	+0.2
4,254,750	+		GFF4235	0.18	-2.6
4,254,750	+		GFF4235	0.18	-0.6
4,254,750	+		GFF4235	0.18	-0.8
4,254,750	+		GFF4235	0.18	-1.1
4,254,750	+		GFF4235	0.18	-1.2
4,254,750	+		GFF4235	0.18	+0.8
4,254,758	-		GFF4235	0.18	-1.3
4,254,758	-		GFF4235	0.18	-1.8
4,254,758	-		GFF4235	0.18	-1.2
4,254,758	-		GFF4235	0.18	-2.8
4,254,764	+		GFF4235	0.19	-2.1
4,254,770	+		GFF4235	0.19	-1.3
4,254,772	-		GFF4235	0.19	+0.3
4,254,814	+		GFF4235	0.21	-0.1
4,254,814	+		GFF4235	0.21	-1.2
4,254,822	-		GFF4235	0.22	-1.2
4,254,853	+		GFF4235	0.24	-0.8
4,254,853	+		GFF4235	0.24	-1.1
4,254,853	+		GFF4235	0.24	+0.2
4,254,861	-		GFF4235	0.24	+1.8
4,254,908	-		GFF4235	0.27	-0.7
4,254,954	-		GFF4235	0.29	-1.0
4,254,978	-		GFF4235	0.31	+0.2
4,254,992	+		GFF4235	0.31	-1.5
4,255,037	-		GFF4235	0.34	+0.5
4,255,070	+		GFF4235	0.36	-1.6
4,255,096	+		GFF4235	0.37	+0.2
4,255,099	-		GFF4235	0.37	-1.6
4,255,102	-		GFF4235	0.38	+0.8
4,255,111	-		GFF4235	0.38	+0.3
4,255,188	-		GFF4235	0.42	+0.8
4,255,188	-		GFF4235	0.42	-0.1
4,255,192	-		GFF4235	0.43	-0.3
4,255,192	-		GFF4235	0.43	+1.1
4,255,262	+		GFF4235	0.47	+0.1
4,255,275	+		GFF4235	0.47	-0.2
4,255,331	+		GFF4235	0.50	-0.6
4,255,364	-		GFF4235	0.52	+1.0
4,255,370	+		GFF4235	0.53	-1.6
4,255,374	-		GFF4235	0.53	-1.9
4,255,374	-		GFF4235	0.53	-1.7
4,255,382	+		GFF4235	0.53	-1.3
4,255,435	-		GFF4235	0.56	+0.0
4,255,453	-		GFF4235	0.57	-0.3
4,255,453	-		GFF4235	0.57	-1.0
4,255,473	+		GFF4235	0.58	-1.6
4,255,476	-		GFF4235	0.59	-1.9
4,255,481	-		GFF4235	0.59	-0.6
4,255,481	-		GFF4235	0.59	-0.1
4,255,488	+		GFF4235	0.59	-0.5
4,255,509	+		GFF4235	0.60	-2.3
4,255,517	-		GFF4235	0.61	-1.3
4,255,535	+		GFF4235	0.62	-0.0
4,255,543	-		GFF4235	0.62	-0.8
4,255,543	-		GFF4235	0.62	-0.4
4,255,570	+		GFF4235	0.64	-1.5
4,255,573	-		GFF4235	0.64	-1.5
4,255,573	-		GFF4235	0.64	-0.3
4,255,573	-		GFF4235	0.64	-2.4
4,255,580	+		GFF4235	0.64	-1.2
4,255,588	-		GFF4235	0.65	-1.3
4,255,600	-		GFF4235	0.65	+0.1
4,255,614	-		GFF4235	0.66	-0.1
4,255,696	+		GFF4235	0.71	-1.8
4,255,702	+		GFF4235	0.71	-0.1
4,255,710	-		GFF4235	0.72	-1.8
4,255,727	+		GFF4235	0.73	+0.8
4,255,735	-		GFF4235	0.73	+1.1
4,255,743	-		GFF4235	0.74	+0.2
4,255,761	-		GFF4235	0.75	+0.8
4,255,773	-		GFF4235	0.75	-1.3
4,255,795	-		GFF4235	0.76	+0.7
4,255,820	+		GFF4235	0.78	-1.9
4,255,828	-		GFF4235	0.78	-1.7
4,255,828	-		GFF4235	0.78	+0.9
4,255,828	-		GFF4235	0.78	-0.6
4,255,828	-		GFF4235	0.78	-1.3
4,255,828	-		GFF4235	0.78	-0.3
4,255,828	-		GFF4235	0.78	+0.7
4,255,828	-		GFF4235	0.78	-0.6
4,255,839	+		GFF4235	0.79	-1.5
4,255,873	+		GFF4235	0.81	-1.2
4,255,883	-		GFF4235	0.81	-1.2
4,255,944	+		GFF4235	0.85	+0.7
4,255,944	+		GFF4235	0.85	-0.3
4,255,968	+		GFF4235	0.86	-1.3
4,255,968	+		GFF4235	0.86	-1.1
4,255,968	+		GFF4235	0.86	-0.5
4,255,968	+		GFF4235	0.86	+0.3
4,255,968	+		GFF4235	0.86	-1.7
4,255,976	-		GFF4235	0.87	-1.2
4,255,976	-		GFF4235	0.87	-1.8
4,255,976	-		GFF4235	0.87	-0.5
4,255,976	-		GFF4235	0.87	-0.3
4,255,976	-		GFF4235	0.87	+0.5
4,255,991	+		GFF4235	0.87	-1.8
4,255,999	-		GFF4235	0.88	-0.7
4,255,999	-		GFF4235	0.88	-0.0
4,256,017	-		GFF4235	0.89	+0.5
4,256,018	-		GFF4235	0.89	-1.8
4,256,071	+				+0.7
4,256,079	-				-0.3
4,256,079	-				-0.0
4,256,079	-				-0.0
4,256,114	-				+1.0
4,256,138	+				+0.9
4,256,143	+				-0.5
4,256,143	+				-0.2
4,256,143	+				-1.8
4,256,143	+				-0.5
4,256,151	+				-1.2
4,256,151	-				-1.5
4,256,151	-				-1.6
4,256,151	-				-0.3
4,256,169	-				+1.5
4,256,169	-				-1.7
4,256,187	+				-0.3
4,256,218	+				-1.3
4,256,269	+				-0.9
4,256,269	+				-1.5
4,256,278	+				-1.3
4,256,302	+				-0.3