Strain Fitness in Sphingobium sp. HT1-2 around GFF4211

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,231,434	-				-1.8
4,231,486	+				-0.5
4,231,501	-				+1.4
4,231,551	+				-1.1
4,231,564	-				+0.3
4,231,585	+				+1.3
4,231,637	+				-1.3
4,231,650	-		GFF4210	0.11	+1.9
4,231,702	+		GFF4210	0.18	+0.8
4,231,710	-		GFF4210	0.19	+0.8
4,231,720	+		GFF4210	0.20	-1.4
4,231,720	+		GFF4210	0.20	+1.3
4,231,720	+		GFF4210	0.20	-0.0
4,231,720	+		GFF4210	0.20	-0.9
4,231,727	+		GFF4210	0.21	-0.4
4,231,727	+		GFF4210	0.21	+0.8
4,231,727	+		GFF4210	0.21	+0.3
4,231,727	+		GFF4210	0.21	+0.6
4,231,727	+		GFF4210	0.21	-0.5
4,231,727	+		GFF4210	0.21	-0.1
4,231,733	-		GFF4210	0.21	+0.7
4,231,735	-		GFF4210	0.22	+0.3
4,231,735	-		GFF4210	0.22	-0.6
4,231,735	-		GFF4210	0.22	+1.0
4,231,735	-		GFF4210	0.22	-0.8
4,231,735	-		GFF4210	0.22	-0.4
4,231,735	-		GFF4210	0.22	+1.0
4,231,737	+		GFF4210	0.22	-0.3
4,231,739	+		GFF4210	0.22	+0.4
4,231,739	+		GFF4210	0.22	-1.1
4,231,801	+		GFF4210	0.30	-0.9
4,231,842	-		GFF4210	0.34	-1.8
4,231,860	+		GFF4210	0.37	+0.2
4,231,868	-		GFF4210	0.38	-0.1
4,231,875	+		GFF4210	0.38	+0.7
4,231,890	+		GFF4210	0.40	+0.1
4,231,915	+		GFF4210	0.43	+0.0
4,231,932	-		GFF4210	0.45	+0.8
4,231,961	+		GFF4210	0.49	+0.7
4,231,970	+		GFF4210	0.50	+0.2
4,231,989	+		GFF4210	0.52	+1.3
4,231,997	-		GFF4210	0.53	+0.2
4,231,997	-		GFF4210	0.53	+0.9
4,232,034	-		GFF4210	0.57	-0.3
4,232,059	-		GFF4210	0.60	+0.2
4,232,059	-		GFF4210	0.60	-0.7
4,232,066	-		GFF4210	0.61	-0.9
4,232,085	-		GFF4210	0.63	+1.8
4,232,095	+		GFF4210	0.65	+0.7
4,232,095	+		GFF4210	0.65	+1.1
4,232,153	-		GFF4210	0.72	+0.4
4,232,164	-		GFF4210	0.73	+0.2
4,232,174	-		GFF4210	0.74	-0.6
4,232,176	+		GFF4210	0.74	+0.7
4,232,191	-		GFF4210	0.76	-0.2
4,232,197	-		GFF4210	0.77	-0.4
4,232,197	-		GFF4210	0.77	-0.0
4,232,286	-		GFF4210	0.87	+0.1
4,232,348	+				-0.4
4,232,389	+				-0.3
4,232,410	+				+0.1
4,232,416	-				-1.4
4,232,416	-				-0.3
4,232,416	-				-1.6
4,232,416	-				+0.0
4,232,416	-				+1.2
4,232,416	-				+0.2
4,232,416	-				-0.9
4,232,418	-				-0.4
4,232,423	+				+0.1
4,232,426	-				+0.3
4,232,822	+		GFF4211	0.34	-0.2
4,232,903	+		GFF4211	0.41	-0.2
4,232,932	+		GFF4211	0.43	+0.6
4,233,057	-		GFF4211	0.54	+0.2
4,233,118	-		GFF4211	0.59	-1.2
4,233,137	-		GFF4211	0.61	-0.4
4,233,137	-		GFF4211	0.61	-1.7
4,233,311	+		GFF4211	0.76	-1.2
4,233,319	-		GFF4211	0.77	-0.8
4,233,371	+		GFF4211	0.81	-0.6
4,233,392	+		GFF4211	0.83	+1.2
4,233,407	+		GFF4211	0.84	+1.1
4,233,464	+		GFF4211	0.89	+0.8
4,233,545	+				+0.2
4,233,553	-				+0.1
4,233,553	-				+1.1
4,233,553	-				+1.4
4,233,553	-				+1.4
4,233,553	-				+0.2
4,233,553	-				+2.0
4,233,663	-				+0.1
4,233,705	+				+1.6
4,233,713	-				-0.8
4,233,768	+		GFF4212	0.22	-0.4
4,233,768	+		GFF4212	0.22	-0.7
4,233,816	+		GFF4212	0.62	-0.5
4,233,816	+		GFF4212	0.62	-0.3
4,233,821	+		GFF4212	0.66	+0.9
4,233,826	+		GFF4212	0.70	-0.1
4,233,826	+		GFF4212	0.70	-0.4
4,233,826	+		GFF4212	0.70	-0.4
4,233,829	-		GFF4212	0.72	+0.0
4,233,842	+		GFF4212	0.83	-0.2
4,233,845	-		GFF4212	0.86	+0.5
4,233,850	-				-0.6
4,233,855	+				+0.5
4,233,860	+				-0.5
4,233,860	+				+2.0
4,233,860	+				-0.3
4,233,860	+				+0.3
4,233,863	-				-1.1
4,233,868	-				-0.4
4,233,868	-				-0.2
4,233,868	-				+1.1
4,233,881	+				+2.1
4,233,881	+				-1.0
4,233,881	+				-1.6
4,233,888	+				-1.0
4,233,889	-				+0.4
4,233,889	-				-1.7
4,233,889	-				-0.6
4,233,889	-				-0.9
4,233,889	-				+0.2
4,233,889	-				-0.2
4,233,889	-				+1.7
4,233,889	-				-0.2
4,233,889	-				-2.1
4,233,909	-				-0.2
4,233,911	-				-0.5
4,233,961	-				+1.1
4,233,990	+				-0.9
4,233,995	+				+0.4
4,234,030	+				-0.9
4,234,075	+				+0.0
4,234,083	-				-0.8
4,234,083	-				+0.6
4,234,129	-		GFF4213	0.12	-0.3
4,234,131	+		GFF4213	0.12	-1.9
4,234,131	+		GFF4213	0.12	-0.3
4,234,131	+		GFF4213	0.12	-0.7
4,234,131	+		GFF4213	0.12	-0.3
4,234,131	+		GFF4213	0.12	-0.0
4,234,131	+		GFF4213	0.12	-0.0
4,234,139	-		GFF4213	0.15	+1.1
4,234,139	-		GFF4213	0.15	+0.6
4,234,189	+		GFF4213	0.27	-0.4
4,234,189	+		GFF4213	0.27	-1.3
4,234,189	+		GFF4213	0.27	+1.1
4,234,189	+		GFF4213	0.27	-1.5
4,234,189	+		GFF4213	0.27	-0.2
4,234,197	-		GFF4213	0.29	+0.9
4,234,197	-		GFF4213	0.29	-0.8
4,234,197	-		GFF4213	0.29	+0.0
4,234,197	-		GFF4213	0.29	+0.1
4,234,207	+		GFF4213	0.32	-0.4
4,234,214	+		GFF4213	0.34	-0.1
4,234,214	+		GFF4213	0.34	-0.8
4,234,214	+		GFF4213	0.34	+1.8
4,234,214	+		GFF4213	0.34	+0.1
4,234,222	-		GFF4213	0.36	-0.4
4,234,222	-		GFF4213	0.36	-1.9
4,234,222	-		GFF4213	0.36	+2.2
4,234,222	-		GFF4213	0.36	+1.1
4,234,222	-		GFF4213	0.36	+1.1
4,234,222	-		GFF4213	0.36	-3.0
4,234,228	+		GFF4213	0.37	+1.6
4,234,244	+		GFF4213	0.41	+1.4
4,234,244	+		GFF4213	0.41	+0.3
4,234,252	-		GFF4213	0.43	-0.3
4,234,265	+		GFF4213	0.47	+0.8
4,234,275	+		GFF4213	0.49	+0.5
4,234,283	-		GFF4213	0.51	-0.7
4,234,284	+		GFF4213	0.51	+0.7
4,234,284	+		GFF4213	0.51	-1.4
4,234,299	+		GFF4213	0.55	-0.3
4,234,299	+		GFF4213	0.55	+1.6
4,234,299	+		GFF4213	0.55	+1.4
4,234,299	+		GFF4213	0.55	-0.5
4,234,299	+		GFF4213	0.55	-0.2
4,234,299	+		GFF4213	0.55	+0.3
4,234,299	+		GFF4213	0.55	+0.0
4,234,299	+		GFF4213	0.55	+0.2
4,234,299	+		GFF4213	0.55	+1.3
4,234,299	+		GFF4213	0.55	-0.9
4,234,299	+		GFF4213	0.55	+0.2
4,234,299	+		GFF4213	0.55	-0.1
4,234,299	+		GFF4213	0.55	-0.8
4,234,307	-		GFF4213	0.57	-0.5
4,234,307	-		GFF4213	0.57	-0.3
4,234,307	-		GFF4213	0.57	-0.2
4,234,307	-		GFF4213	0.57	+1.0
4,234,307	-		GFF4213	0.57	-1.1
4,234,307	-		GFF4213	0.57	+0.5
4,234,307	-		GFF4213	0.57	-0.7
4,234,307	-		GFF4213	0.57	-1.2
4,234,307	-		GFF4213	0.57	+0.0
4,234,307	-		GFF4213	0.57	-0.9
4,234,344	+		GFF4213	0.67	-1.7
4,234,356	+		GFF4213	0.70	-0.5
4,234,356	+		GFF4213	0.70	+0.8
4,234,376	-		GFF4213	0.75	-2.0
4,234,379	+		GFF4213	0.76	+0.4
4,234,379	-		GFF4213	0.76	+0.1
4,234,386	-		GFF4213	0.77	-1.1
4,234,387	-		GFF4213	0.78	+0.1
4,234,389	+		GFF4213	0.78	+1.0
4,234,404	+		GFF4213	0.82	+0.1
4,234,404	+		GFF4213	0.82	-0.3
4,234,409	+		GFF4213	0.83	-1.5
4,234,409	+		GFF4213	0.83	+1.0
4,234,409	+		GFF4213	0.83	-0.6
4,234,417	-		GFF4213	0.85	-1.7
4,234,417	-		GFF4213	0.85	+1.0
4,234,417	-		GFF4213	0.85	-1.4
4,234,417	-		GFF4213	0.85	+0.4
4,234,417	-		GFF4213	0.85	-1.0
4,234,451	+				-0.9
4,234,451	+				+0.7
4,234,451	+				-0.7
4,234,451	+				-0.8
4,234,451	+				+2.0
4,234,459	-				+1.0
4,234,459	-				-1.7
4,234,459	-				+0.5
4,234,459	-				+0.2
4,234,492	-				-0.2
4,234,521	-				-0.7
4,234,524	+				+0.8
4,234,539	-				-0.7
4,234,544	+				-0.4
4,234,553	+				+1.1
4,234,583	-		GFF4214	0.22	+0.0