Strain Fitness in Sphingobium sp. HT1-2 around GFF4206

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,227,419	+		GFF4204	0.43	+0.7
4,227,440	-		GFF4204	0.47	-0.4
4,227,501	+		GFF4204	0.58	+1.5
4,227,506	+		GFF4204	0.59	+0.3
4,227,506	+		GFF4204	0.59	-0.5
4,227,506	+		GFF4204	0.59	-0.4
4,227,506	+		GFF4204	0.59	+0.5
4,227,506	+		GFF4204	0.59	-2.0
4,227,506	+		GFF4204	0.59	-0.0
4,227,506	+		GFF4204	0.59	-0.5
4,227,507	+		GFF4204	0.60	-1.8
4,227,509	-		GFF4204	0.60	+1.0
4,227,509	-		GFF4204	0.60	+0.1
4,227,509	-		GFF4204	0.60	+0.3
4,227,512	+		GFF4204	0.60	+1.1
4,227,512	+		GFF4204	0.60	+0.8
4,227,514	-		GFF4204	0.61	+0.3
4,227,514	-		GFF4204	0.61	+0.6
4,227,514	-		GFF4204	0.61	-1.0
4,227,514	-		GFF4204	0.61	+0.6
4,227,514	-		GFF4204	0.61	+0.4
4,227,514	-		GFF4204	0.61	+0.8
4,227,514	-		GFF4204	0.61	-1.0
4,227,515	-		GFF4204	0.61	-0.1
4,227,515	-		GFF4204	0.61	+0.2
4,227,520	-		GFF4204	0.62	-0.3
4,227,520	-		GFF4204	0.62	-0.9
4,227,529	+		GFF4204	0.64	-1.2
4,227,549	+		GFF4204	0.67	-0.1
4,227,549	+		GFF4204	0.67	-0.4
4,227,552	-		GFF4204	0.68	-2.3
4,227,557	-		GFF4204	0.69	-0.0
4,227,564	-		GFF4204	0.70	+0.3
4,227,568	+		GFF4204	0.71	-1.1
4,227,574	-		GFF4204	0.72	-1.4
4,227,602	-		GFF4204	0.77	-0.3
4,227,604	+		GFF4204	0.77	-1.1
4,227,604	+		GFF4204	0.77	+0.6
4,227,617	+		GFF4204	0.80	-1.2
4,227,630	+		GFF4204	0.82	-1.3
4,227,630	+		GFF4204	0.82	+0.8
4,227,630	+		GFF4204	0.82	-0.1
4,227,630	-		GFF4204	0.82	+0.8
4,227,638	-		GFF4204	0.84	+0.9
4,227,638	-		GFF4204	0.84	+1.3
4,227,669	-		GFF4204	0.89	+0.2
4,227,670	-		GFF4204	0.89	-0.2
4,227,671	-		GFF4204	0.90	-0.1
4,227,671	-		GFF4204	0.90	-1.2
4,227,671	-		GFF4204	0.90	-1.2
4,227,725	+				+1.0
4,227,725	+				-0.3
4,227,733	-				-1.2
4,227,733	-				-0.2
4,227,733	-				-1.2
4,227,766	+				-2.2
4,227,766	+				-2.0
4,227,766	+				-0.7
4,227,766	+				-0.8
4,227,766	+				+1.1
4,227,766	+				-2.1
4,227,771	+				+0.8
4,227,771	+				-0.7
4,227,771	+				-2.0
4,227,771	+				-0.2
4,227,771	+				-1.4
4,227,771	+				-0.7
4,227,771	+				-0.7
4,227,771	+				-0.6
4,227,771	+				-0.5
4,227,771	+				-0.7
4,227,774	-				-1.2
4,227,774	-				+0.3
4,227,774	-				+1.3
4,227,774	-				-2.2
4,227,774	-				+0.7
4,227,775	+				+0.4
4,227,775	+				-0.6
4,227,779	-		GFF4205	0.10	+0.1
4,227,779	-		GFF4205	0.10	+0.3
4,227,779	-		GFF4205	0.10	-0.2
4,227,779	-		GFF4205	0.10	-1.1
4,227,779	-		GFF4205	0.10	-1.0
4,227,779	-		GFF4205	0.10	-0.7
4,227,779	-		GFF4205	0.10	+0.2
4,227,779	-		GFF4205	0.10	+0.2
4,227,779	-		GFF4205	0.10	+0.5
4,227,779	-		GFF4205	0.10	+0.3
4,227,779	-		GFF4205	0.10	-0.2
4,227,779	-		GFF4205	0.10	+0.6
4,227,779	-		GFF4205	0.10	-0.5
4,227,797	+		GFF4205	0.14	-1.2
4,227,803	+		GFF4205	0.15	-0.6
4,227,803	+		GFF4205	0.15	-0.6
4,227,805	-		GFF4205	0.15	+0.6
4,227,805	-		GFF4205	0.15	-1.2
4,227,807	+		GFF4205	0.16	-0.1
4,227,807	+		GFF4205	0.16	-0.5
4,227,808	+		GFF4205	0.16	+1.1
4,227,815	-		GFF4205	0.17	-0.5
4,227,828	+		GFF4205	0.20	-0.1
4,227,828	+		GFF4205	0.20	-0.6
4,227,828	+		GFF4205	0.20	-1.4
4,227,836	-		GFF4205	0.21	-1.7
4,227,846	+		GFF4205	0.23	-0.9
4,227,846	+		GFF4205	0.23	+0.1
4,227,854	-		GFF4205	0.25	-0.1
4,227,874	+		GFF4205	0.28	-0.1
4,227,879	+		GFF4205	0.29	-0.8
4,227,883	+		GFF4205	0.30	-0.4
4,227,883	+		GFF4205	0.30	-2.0
4,227,891	-		GFF4205	0.32	-0.8
4,227,891	-		GFF4205	0.32	+1.1
4,227,891	-		GFF4205	0.32	-1.0
4,227,904	-		GFF4205	0.34	-0.6
4,227,911	+		GFF4205	0.35	-0.5
4,227,919	-		GFF4205	0.37	-0.1
4,227,929	-		GFF4205	0.39	+0.8
4,227,987	+		GFF4205	0.50	-0.4
4,228,020	+		GFF4205	0.56	+2.0
4,228,020	+		GFF4205	0.56	-0.5
4,228,020	+		GFF4205	0.56	-1.2
4,228,020	+		GFF4205	0.56	+1.5
4,228,020	+		GFF4205	0.56	-0.9
4,228,020	+		GFF4205	0.56	+0.1
4,228,025	+		GFF4205	0.57	-2.0
4,228,025	+		GFF4205	0.57	-1.8
4,228,025	+		GFF4205	0.57	-0.3
4,228,028	-		GFF4205	0.58	-0.1
4,228,028	-		GFF4205	0.58	-1.9
4,228,028	-		GFF4205	0.58	+0.4
4,228,028	-		GFF4205	0.58	+0.6
4,228,028	-		GFF4205	0.58	-1.1
4,228,028	-		GFF4205	0.58	-0.1
4,228,028	-		GFF4205	0.58	-0.9
4,228,030	+		GFF4205	0.58	-0.6
4,228,030	+		GFF4205	0.58	-0.5
4,228,030	+		GFF4205	0.58	+0.2
4,228,030	+		GFF4205	0.58	-1.2
4,228,030	+		GFF4205	0.58	-1.3
4,228,030	+		GFF4205	0.58	-1.3
4,228,030	+		GFF4205	0.58	-1.3
4,228,030	+		GFF4205	0.58	+0.4
4,228,030	+		GFF4205	0.58	-1.9
4,228,030	+		GFF4205	0.58	-1.3
4,228,030	+		GFF4205	0.58	+0.8
4,228,030	+		GFF4205	0.58	-0.6
4,228,030	+		GFF4205	0.58	-0.7
4,228,030	+		GFF4205	0.58	-0.3
4,228,030	+		GFF4205	0.58	-0.4
4,228,030	+		GFF4205	0.58	-2.0
4,228,030	+		GFF4205	0.58	-0.0
4,228,030	+		GFF4205	0.58	-2.4
4,228,030	+		GFF4205	0.58	+0.7
4,228,033	-		GFF4205	0.59	-0.0
4,228,033	-		GFF4205	0.59	-0.2
4,228,033	-		GFF4205	0.59	-0.3
4,228,033	-		GFF4205	0.59	-1.3
4,228,038	-		GFF4205	0.59	-0.2
4,228,038	-		GFF4205	0.59	-0.5
4,228,038	-		GFF4205	0.59	-1.2
4,228,038	-		GFF4205	0.59	-0.9
4,228,038	-		GFF4205	0.59	-0.8
4,228,038	-		GFF4205	0.59	+1.7
4,228,038	-		GFF4205	0.59	-0.5
4,228,038	-		GFF4205	0.59	+0.7
4,228,038	-		GFF4205	0.59	-1.5
4,228,038	-		GFF4205	0.59	+0.2
4,228,038	-		GFF4205	0.59	-0.5
4,228,038	-		GFF4205	0.59	-1.9
4,228,038	-		GFF4205	0.59	+0.5
4,228,043	-		GFF4205	0.60	-1.1
4,228,060	+		GFF4205	0.64	-2.4
4,228,060	+		GFF4205	0.64	-1.4
4,228,068	-		GFF4205	0.65	-0.3
4,228,068	-		GFF4205	0.65	-1.5
4,228,077	+		GFF4205	0.67	-0.3
4,228,113	-		GFF4205	0.74	+1.2
4,228,120	-		GFF4205	0.75	-1.9
4,228,125	-		GFF4205	0.76	-0.1
4,228,126	+		GFF4205	0.76	+1.2
4,228,126	+		GFF4205	0.76	-0.3
4,228,131	+		GFF4205	0.77	+0.3
4,228,131	+		GFF4205	0.77	+0.8
4,228,131	+		GFF4205	0.77	-1.9
4,228,131	+		GFF4205	0.77	+0.8
4,228,131	+		GFF4205	0.77	-0.2
4,228,131	+		GFF4205	0.77	-2.3
4,228,131	+		GFF4205	0.77	-0.9
4,228,132	-		GFF4205	0.77	+0.1
4,228,134	-		GFF4205	0.78	-1.6
4,228,134	-		GFF4205	0.78	-1.0
4,228,139	-		GFF4205	0.79	-0.5
4,228,139	-		GFF4205	0.79	-1.7
4,228,139	-		GFF4205	0.79	-1.6
4,228,139	-		GFF4205	0.79	-0.6
4,228,139	-		GFF4205	0.79	-1.2
4,228,139	-		GFF4205	0.79	+0.3
4,228,139	-		GFF4205	0.79	-1.1
4,228,139	-		GFF4205	0.79	+0.9
4,228,149	+		GFF4205	0.80	+0.2
4,228,167	+		GFF4205	0.84	-0.2
4,228,167	-		GFF4205	0.84	+0.8
4,228,179	-		GFF4205	0.86	+0.7
4,228,194	+		GFF4205	0.89	-2.0
4,228,195	+		GFF4205	0.89	-2.5
4,228,252	+				-0.3
4,228,276	+				-1.8
4,228,284	-				-1.5
4,228,284	-				+1.2
4,228,302	+				-0.8
4,228,306	+				-0.3
4,228,314	+				-0.3
4,228,316	-				-0.1
4,228,322	-				-0.3
4,228,329	+				+1.0
4,228,375	-				+0.7
4,228,397	+				+0.9
4,228,404	+				-1.5
4,228,404	+				+0.0
4,228,404	+				+0.6
4,228,404	+				-0.8
4,228,404	+				-1.9
4,228,404	+				+0.6
4,228,404	+				+0.8
4,228,404	+				-1.2
4,228,412	-				+0.5
4,228,412	-				-0.8
4,228,412	-				-0.0
4,228,412	-				-0.7
4,228,412	-				+0.4
4,228,412	-				-0.7
4,228,412	-				-2.2
4,228,434	+				-0.8
4,228,744	-		GFF4206	0.64	-0.4
4,228,751	+		GFF4206	0.66	-1.6
4,228,759	+		GFF4206	0.67	+0.5
4,228,759	+		GFF4206	0.67	-0.5
4,228,760	+		GFF4206	0.67	+0.5
4,228,760	+		GFF4206	0.67	+1.1
4,228,760	+		GFF4206	0.67	-0.3
4,228,760	+		GFF4206	0.67	-1.7
4,228,767	-		GFF4206	0.69	-0.1
4,228,767	-		GFF4206	0.69	+0.3
4,228,767	-		GFF4206	0.69	+0.1
4,228,767	-		GFF4206	0.69	-0.1
4,228,768	-		GFF4206	0.69	+0.2
4,228,768	-		GFF4206	0.69	-0.0
4,228,768	-		GFF4206	0.69	-0.4
4,228,768	-		GFF4206	0.69	-2.3
4,228,778	-		GFF4206	0.71	-0.9
4,228,782	-		GFF4206	0.72	-0.4
4,228,810	-		GFF4206	0.77	-1.8
4,228,810	-		GFF4206	0.77	-2.5
4,228,820	+		GFF4206	0.79	-0.2
4,228,856	+		GFF4206	0.86	+0.6
4,228,866	+		GFF4206	0.88	-1.3
4,228,897	+				+0.7
4,228,938	-				+0.5
4,228,947	+				-1.7
4,228,947	+				-0.5
4,228,952	+				-0.6
4,228,952	+				-1.2
4,228,952	+				-1.0
4,228,952	+				-0.9
4,228,955	-				-1.0
4,228,957	+				-0.8
4,228,957	+				+1.0
4,228,957	+				-1.3
4,228,957	+				-0.4
4,228,957	+				-1.4
4,228,962	+				-1.2
4,228,962	+				+1.4
4,228,962	+				+0.8
4,228,966	+				-1.0
4,228,970	-				+0.8
4,228,974	-				-0.9
4,228,974	-				+0.4
4,229,010	-				-2.2
4,229,043	-				+2.1
4,229,099	-				+0.8
4,229,180	+				+0.1
4,229,180	+				-1.0
4,229,215	-				+0.9
4,229,222	-				-1.6
4,229,268	+				-0.8
4,229,276	-				-0.7
4,229,277	-				+0.4
4,229,277	-				-0.9
4,229,299	-				-1.3
4,229,348	+				-0.5
4,229,351	-				+0.3
4,229,356	-				-0.3
4,229,365	+				-1.2
4,229,376	+				-0.6
4,229,416	-				+0.0
4,229,421	+				-0.8
4,229,421	+				+0.7
4,229,421	+				-0.8
4,229,421	+				-0.3
4,229,421	+				-1.4
4,229,421	+				-2.1
4,229,429	-				+0.3
4,229,429	-				+0.7
4,229,429	-				-0.6
4,229,429	-				-1.3
4,229,429	-				-1.3
4,229,434	+				-1.1
4,229,437	+				+0.2
4,229,467	+				-0.1
4,229,485	+		GFF4207	0.11	-1.1
4,229,498	+		GFF4207	0.13	-1.0
4,229,506	-		GFF4207	0.14	-1.0
4,229,506	-		GFF4207	0.14	-1.1
4,229,516	-		GFF4207	0.16	+0.3
4,229,535	+		GFF4207	0.18	-1.5
4,229,535	+		GFF4207	0.18	+0.2
4,229,535	+		GFF4207	0.18	-0.1
4,229,540	+		GFF4207	0.19	-0.1
4,229,540	+		GFF4207	0.19	+0.8
4,229,543	-		GFF4207	0.20	+0.2
4,229,543	-		GFF4207	0.20	+0.1
4,229,543	-		GFF4207	0.20	-0.8
4,229,543	-		GFF4207	0.20	-0.3
4,229,581	+		GFF4207	0.26	-1.2
4,229,581	+		GFF4207	0.26	+1.8
4,229,581	+		GFF4207	0.26	-0.2
4,229,581	+		GFF4207	0.26	-1.2
4,229,589	-		GFF4207	0.27	-0.2
4,229,589	-		GFF4207	0.27	+0.0
4,229,598	+		GFF4207	0.28	-1.5
4,229,601	-		GFF4207	0.29	-0.5
4,229,603	+		GFF4207	0.29	+0.0
4,229,605	+		GFF4207	0.29	-0.6
4,229,605	+		GFF4207	0.29	+0.9
4,229,605	+		GFF4207	0.29	-0.5
4,229,605	+		GFF4207	0.29	-1.4
4,229,613	-		GFF4207	0.31	-2.0
4,229,613	-		GFF4207	0.31	-0.8
4,229,613	-		GFF4207	0.31	-1.3
4,229,613	-		GFF4207	0.31	-1.0
4,229,613	-		GFF4207	0.31	-0.2
4,229,613	-		GFF4207	0.31	+0.0
4,229,613	-		GFF4207	0.31	+0.3
4,229,613	-		GFF4207	0.31	+0.3
4,229,613	-		GFF4207	0.31	+0.3
4,229,613	-		GFF4207	0.31	-1.4
4,229,639	-		GFF4207	0.35	-1.5
4,229,639	-		GFF4207	0.35	-0.2
4,229,653	+		GFF4207	0.37	+0.2
4,229,660	-		GFF4207	0.38	+0.8
4,229,660	-		GFF4207	0.38	+0.3
4,229,667	+		GFF4207	0.39	-0.5
4,229,669	+		GFF4207	0.39	-2.1
4,229,669	+		GFF4207	0.39	+0.3
4,229,705	+		GFF4207	0.45	+0.5
4,229,739	-		GFF4207	0.50	-0.0
4,229,749	-		GFF4207	0.52	-1.6
4,229,759	+		GFF4207	0.53	-2.5
4,229,759	+		GFF4207	0.53	-2.0
4,229,760	+		GFF4207	0.53	-2.0
4,229,766	+		GFF4207	0.54	+0.4
4,229,766	+		GFF4207	0.54	+0.5
4,229,766	+		GFF4207	0.54	+0.9
4,229,766	+		GFF4207	0.54	+0.6
4,229,774	-		GFF4207	0.56	-1.3
4,229,774	-		GFF4207	0.56	+0.5
4,229,774	-		GFF4207	0.56	-0.2
4,229,774	-		GFF4207	0.56	+0.3
4,229,785	+		GFF4207	0.57	-0.5
4,229,785	-		GFF4207	0.57	-1.6
4,229,785	-		GFF4207	0.57	-0.5
4,229,785	-		GFF4207	0.57	-0.4
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4,229,803	-		GFF4207	0.60	-1.4
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4,229,810	+		GFF4207	0.61	-2.8
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