Strain Fitness in Sphingobium sp. HT1-2 around GFF4125

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,148,311	-		GFF4124	0.11	-0.0
4,148,322	-		GFF4124	0.12	+0.1
4,148,346	-		GFF4124	0.14	-0.7
4,148,357	-		GFF4124	0.15	-0.0
4,148,372	+		GFF4124	0.17	+0.2
4,148,374	+		GFF4124	0.17	+0.6
4,148,392	-		GFF4124	0.18	+1.3
4,148,399	+		GFF4124	0.19	+0.2
4,148,407	-		GFF4124	0.20	-0.3
4,148,407	-		GFF4124	0.20	+0.4
4,148,407	-		GFF4124	0.20	+1.2
4,148,434	+		GFF4124	0.22	+0.6
4,148,447	-		GFF4124	0.23	+0.8
4,148,449	+		GFF4124	0.23	+0.4
4,148,456	+		GFF4124	0.24	+1.5
4,148,470	+		GFF4124	0.25	-1.0
4,148,485	+		GFF4124	0.27	-0.0
4,148,485	+		GFF4124	0.27	-1.0
4,148,489	+		GFF4124	0.27	-1.2
4,148,489	+		GFF4124	0.27	-1.6
4,148,495	-		GFF4124	0.28	-0.8
4,148,497	-		GFF4124	0.28	-0.4
4,148,543	-		GFF4124	0.32	+0.7
4,148,565	+		GFF4124	0.34	-0.9
4,148,582	+		GFF4124	0.35	-0.6
4,148,584	+		GFF4124	0.36	-0.2
4,148,592	-		GFF4124	0.36	+0.3
4,148,602	+		GFF4124	0.37	-1.6
4,148,610	-		GFF4124	0.38	-1.4
4,148,610	-		GFF4124	0.38	-0.8
4,148,643	+		GFF4124	0.41	+0.6
4,148,647	-		GFF4124	0.41	+0.5
4,148,651	+		GFF4124	0.42	+1.0
4,148,651	+		GFF4124	0.42	+0.5
4,148,652	-		GFF4124	0.42	+0.1
4,148,652	-		GFF4124	0.42	-1.4
4,148,652	-		GFF4124	0.42	+0.1
4,148,679	+		GFF4124	0.44	-0.4
4,148,679	+		GFF4124	0.44	-0.2
4,148,682	-		GFF4124	0.44	-1.2
4,148,687	-		GFF4124	0.45	+0.4
4,148,688	-		GFF4124	0.45	-1.2
4,148,689	+		GFF4124	0.45	-1.2
4,148,692	+		GFF4124	0.45	-0.4
4,148,722	+		GFF4124	0.48	+1.2
4,148,724	-		GFF4124	0.48	+0.4
4,148,730	-		GFF4124	0.49	+0.1
4,148,730	-		GFF4124	0.49	+0.0
4,148,769	-		GFF4124	0.52	-1.0
4,148,771	+		GFF4124	0.52	+0.0
4,148,771	+		GFF4124	0.52	-0.0
4,148,771	+		GFF4124	0.52	-0.1
4,148,779	-		GFF4124	0.53	+0.7
4,148,779	-		GFF4124	0.53	+0.2
4,148,779	-		GFF4124	0.53	-0.1
4,148,779	-		GFF4124	0.53	+0.9
4,148,779	-		GFF4124	0.53	-1.9
4,148,798	+		GFF4124	0.55	+0.1
4,148,812	+		GFF4124	0.56	-1.2
4,148,812	+		GFF4124	0.56	+0.9
4,148,820	-		GFF4124	0.57	+1.3
4,148,829	+		GFF4124	0.58	-0.2
4,148,848	+		GFF4124	0.59	+0.2
4,148,863	+		GFF4124	0.61	+0.0
4,148,863	+		GFF4124	0.61	-0.7
4,148,868	+		GFF4124	0.61	+0.1
4,148,871	-		GFF4124	0.61	+0.1
4,148,876	+		GFF4124	0.62	+0.2
4,148,876	-		GFF4124	0.62	-0.2
4,148,876	-		GFF4124	0.62	-1.9
4,148,876	-		GFF4124	0.62	+0.6
4,148,895	+		GFF4124	0.64	-1.0
4,148,903	-		GFF4124	0.64	-0.5
4,148,903	-		GFF4124	0.64	-1.5
4,148,912	+		GFF4124	0.65	-1.2
4,148,941	+		GFF4124	0.68	+0.5
4,148,941	+		GFF4124	0.68	-0.3
4,148,941	+		GFF4124	0.68	-0.3
4,148,946	+		GFF4124	0.68	+0.1
4,148,946	+		GFF4124	0.68	-0.8
4,148,946	+		GFF4124	0.68	+0.1
4,148,946	+		GFF4124	0.68	+1.6
4,148,946	+		GFF4124	0.68	-1.2
4,148,948	+		GFF4124	0.68	-0.9
4,148,949	-		GFF4124	0.68	+0.5
4,148,954	+		GFF4124	0.69	-0.1
4,148,954	+		GFF4124	0.69	-1.5
4,148,954	-		GFF4124	0.69	+0.7
4,148,954	-		GFF4124	0.69	+0.2
4,149,027	+		GFF4124	0.75	+0.5
4,149,035	-		GFF4124	0.76	+0.0
4,149,055	-		GFF4124	0.78	+0.2
4,149,057	+		GFF4124	0.78	+0.5
4,149,057	+		GFF4124	0.78	-0.6
4,149,062	+		GFF4124	0.79	-1.0
4,149,070	-		GFF4124	0.79	-0.2
4,149,078	+		GFF4124	0.80	-0.4
4,149,083	+		GFF4124	0.80	+0.8
4,149,086	-		GFF4124	0.81	+0.2
4,149,096	-		GFF4124	0.82	-1.7
4,149,103	+		GFF4124	0.82	+0.5
4,149,103	+		GFF4124	0.82	+0.8
4,149,103	+		GFF4124	0.82	+0.4
4,149,112	+		GFF4124	0.83	-0.4
4,149,112	+		GFF4124	0.83	-1.9
4,149,112	+		GFF4124	0.83	-0.5
4,149,112	+		GFF4124	0.83	-0.6
4,149,115	-		GFF4124	0.83	+0.5
4,149,117	+		GFF4124	0.83	+0.3
4,149,125	-		GFF4124	0.84	+0.7
4,149,139	-		GFF4124	0.85	-1.4
4,149,139	-		GFF4124	0.85	-0.8
4,149,149	-		GFF4124	0.86	-1.3
4,149,161	+		GFF4124	0.87	+0.7
4,149,177	+		GFF4124	0.89	+0.5
4,149,177	+		GFF4124	0.89	-1.0
4,149,177	+		GFF4124	0.89	+0.4
4,149,177	+		GFF4124	0.89	+0.8
4,149,177	+		GFF4124	0.89	-1.2
4,149,183	+		GFF4124	0.89	+0.1
4,149,183	+		GFF4124	0.89	-0.4
4,149,185	-		GFF4124	0.90	+0.1
4,149,185	-		GFF4124	0.90	+0.7
4,149,185	-		GFF4124	0.90	-1.2
4,149,185	-		GFF4124	0.90	+1.0
4,149,191	-				+0.7
4,149,191	-				-0.8
4,149,197	+				-0.9
4,149,205	-				+0.4
4,149,207	+				+0.6
4,149,225	+				-2.9
4,149,234	-				-1.2
4,149,281	+				+1.5
4,149,282	-				-0.1
4,149,289	+				-0.1
4,149,289	+				+2.4
4,149,289	+				-0.7
4,149,289	+				+0.4
4,149,297	-				+0.6
4,149,312	-				+1.5
4,149,320	+				+0.6
4,149,320	+				+0.8
4,149,320	+				+0.2
4,149,320	+				+1.0
4,149,325	+				-0.5
4,149,328	-				-0.3
4,149,328	-				-0.6
4,149,328	-				+0.5
4,149,328	-				-1.2
4,149,333	-				+0.5
4,149,335	+				-1.3
4,149,335	-				+0.5
4,149,392	-		GFF4125	0.11	+0.3
4,149,461	+		GFF4125	0.18	+1.9
4,149,489	+		GFF4125	0.22	+1.0
4,149,489	+		GFF4125	0.22	-0.6
4,149,489	+		GFF4125	0.22	-0.5
4,149,497	-		GFF4125	0.22	-2.2
4,149,497	-		GFF4125	0.22	-3.3
4,149,497	-		GFF4125	0.22	-0.9
4,149,497	-		GFF4125	0.22	-2.3
4,149,497	-		GFF4125	0.22	+0.2
4,149,511	+		GFF4125	0.24	-0.3
4,149,511	+		GFF4125	0.24	+0.8
4,149,519	-		GFF4125	0.25	+0.4
4,149,519	-		GFF4125	0.25	-2.2
4,149,519	-		GFF4125	0.25	-0.7
4,149,528	-		GFF4125	0.26	+0.4
4,149,531	+		GFF4125	0.26	-3.1
4,149,539	-		GFF4125	0.27	+1.4
4,149,545	-		GFF4125	0.28	+0.3
4,149,545	-		GFF4125	0.28	-1.0
4,149,545	-		GFF4125	0.28	+0.1
4,149,554	+		GFF4125	0.29	+1.0
4,149,562	-		GFF4125	0.30	-0.6
4,149,562	-		GFF4125	0.30	+0.1
4,149,602	+		GFF4125	0.34	-1.6
4,149,602	+		GFF4125	0.34	+0.8
4,149,602	+		GFF4125	0.34	+0.4
4,149,610	-		GFF4125	0.35	+0.6
4,149,610	-		GFF4125	0.35	+0.6
4,149,610	-		GFF4125	0.35	-1.4
4,149,610	-		GFF4125	0.35	-0.1
4,149,610	-		GFF4125	0.35	+0.2
4,149,612	+		GFF4125	0.36	-0.5
4,149,612	+		GFF4125	0.36	-1.0
4,149,617	+		GFF4125	0.36	+0.3
4,149,625	-		GFF4125	0.37	-0.3
4,149,635	+		GFF4125	0.38	+0.8
4,149,637	+		GFF4125	0.38	-0.7
4,149,641	-		GFF4125	0.39	-0.7
4,149,643	-		GFF4125	0.39	+1.4
4,149,645	-		GFF4125	0.39	-0.1
4,149,667	-		GFF4125	0.42	-0.9
4,149,669	+		GFF4125	0.42	-0.4
4,149,700	+		GFF4125	0.46	+0.6
4,149,705	+		GFF4125	0.46	+0.5
4,149,705	+		GFF4125	0.46	-1.6
4,149,708	-		GFF4125	0.47	-0.5
4,149,713	-		GFF4125	0.47	+0.3
4,149,713	-		GFF4125	0.47	+2.2
4,149,747	+		GFF4125	0.51	-1.3
4,149,786	+		GFF4125	0.55	-1.4
4,149,788	+		GFF4125	0.56	-0.7
4,149,796	+		GFF4125	0.57	+0.1
4,149,804	-		GFF4125	0.58	-1.0
4,149,804	-		GFF4125	0.58	-0.2
4,149,813	+		GFF4125	0.59	+1.6
4,149,813	+		GFF4125	0.59	+1.6
4,149,813	+		GFF4125	0.59	+0.5
4,149,813	+		GFF4125	0.59	-0.1
4,149,813	+		GFF4125	0.59	-2.2
4,149,821	-		GFF4125	0.59	+0.6
4,149,821	-		GFF4125	0.59	-0.5
4,149,821	-		GFF4125	0.59	+1.0
4,149,821	-		GFF4125	0.59	-0.0
4,149,821	-		GFF4125	0.59	-0.6
4,149,821	-		GFF4125	0.59	+0.5
4,149,821	-		GFF4125	0.59	+0.2
4,149,838	+		GFF4125	0.61	-1.7
4,149,838	+		GFF4125	0.61	-0.9
4,149,838	+		GFF4125	0.61	+0.5
4,149,838	+		GFF4125	0.61	+0.3
4,149,838	+		GFF4125	0.61	-0.3
4,149,838	+		GFF4125	0.61	+0.5
4,149,846	-		GFF4125	0.62	-0.2
4,149,851	-		GFF4125	0.63	-1.0
4,149,853	+		GFF4125	0.63	+1.2
4,149,859	-		GFF4125	0.64	+0.5
4,149,874	+		GFF4125	0.66	+0.2
4,149,874	+		GFF4125	0.66	-1.6
4,149,874	+		GFF4125	0.66	-1.0
4,149,882	-		GFF4125	0.66	+0.2
4,149,914	-		GFF4125	0.70	-1.8
4,149,930	+		GFF4125	0.72	+1.0
4,149,931	+		GFF4125	0.72	-0.7
4,149,939	-		GFF4125	0.73	-2.0
4,149,943	-		GFF4125	0.73	-0.3
4,149,943	-		GFF4125	0.73	-0.4
4,149,943	-		GFF4125	0.73	-1.3
4,149,943	-		GFF4125	0.73	+0.5
4,149,950	+		GFF4125	0.74	+0.3
4,149,951	-		GFF4125	0.74	+0.2
4,149,953	-		GFF4125	0.75	+0.9
4,149,958	+		GFF4125	0.75	+0.8
4,149,958	+		GFF4125	0.75	-1.6
4,149,958	+		GFF4125	0.75	-1.3
4,149,963	+		GFF4125	0.76	+0.0
4,149,963	-		GFF4125	0.76	+0.7
4,149,966	-		GFF4125	0.76	+1.7
4,149,971	-		GFF4125	0.77	+0.2
4,149,974	+		GFF4125	0.77	-0.7
4,149,981	-		GFF4125	0.78	+0.3
4,149,986	-		GFF4125	0.78	-1.3
4,150,064	+		GFF4125	0.87	-0.9
4,150,064	+		GFF4125	0.87	+0.7
4,150,064	+		GFF4125	0.87	+1.2
4,150,064	+		GFF4125	0.87	-0.1
4,150,072	-		GFF4125	0.88	-1.8
4,150,072	-		GFF4125	0.88	-0.8
4,150,088	-				-2.2
4,150,100	-				-0.5
4,150,133	+				-1.8
4,150,146	+				+0.0
4,150,169	+				-0.6
4,150,178	-				+0.9
4,150,200	+				-1.2
4,150,203	-				+0.8
4,150,205	+				-0.0
4,150,208	-				-1.0
4,150,208	-				+0.4
4,150,213	-				-0.4
4,150,251	+				+0.0
4,150,303	+		GFF4126	0.13	-0.2
4,150,311	-		GFF4126	0.14	-0.6
4,150,325	-		GFF4126	0.15	-0.5
4,150,325	-		GFF4126	0.15	+0.6
4,150,371	-		GFF4126	0.20	-0.0
4,150,382	+		GFF4126	0.21	+0.7
4,150,382	-		GFF4126	0.21	-0.4
4,150,391	+		GFF4126	0.22	-0.7
4,150,409	-		GFF4126	0.24	+0.3
4,150,411	-		GFF4126	0.24	+0.5
4,150,419	-		GFF4126	0.25	+0.0
4,150,444	-		GFF4126	0.28	-0.7
4,150,444	-		GFF4126	0.28	+1.0
4,150,449	+		GFF4126	0.28	-0.2
4,150,452	-		GFF4126	0.28	+0.7
4,150,457	+		GFF4126	0.29	+0.3
4,150,457	+		GFF4126	0.29	-0.7
4,150,457	+		GFF4126	0.29	-1.4
4,150,464	+		GFF4126	0.30	-1.7
4,150,470	+		GFF4126	0.30	+0.5
4,150,479	+		GFF4126	0.31	+0.3
4,150,480	+		GFF4126	0.31	-0.5
4,150,485	+		GFF4126	0.32	+0.3
4,150,485	+		GFF4126	0.32	+0.4
4,150,493	-		GFF4126	0.33	-1.6
4,150,509	+		GFF4126	0.34	-2.5
4,150,517	-		GFF4126	0.35	-0.5
4,150,517	-		GFF4126	0.35	-0.1
4,150,517	-		GFF4126	0.35	-0.7
4,150,524	+		GFF4126	0.36	+0.1
4,150,552	-		GFF4126	0.39	-0.5
4,150,562	-		GFF4126	0.40	-0.2
4,150,562	-		GFF4126	0.40	+1.0
4,150,562	-		GFF4126	0.40	+0.2
4,150,579	-		GFF4126	0.42	-1.1
4,150,603	-		GFF4126	0.44	-0.4
4,150,609	+		GFF4126	0.45	+0.6
4,150,622	-		GFF4126	0.46	-0.8
4,150,622	-		GFF4126	0.46	-0.1
4,150,626	+		GFF4126	0.46	+0.0
4,150,626	+		GFF4126	0.46	+0.5
4,150,628	+		GFF4126	0.47	-0.6
4,150,628	+		GFF4126	0.47	-0.5
4,150,634	-		GFF4126	0.47	+0.0
4,150,634	-		GFF4126	0.47	+0.6
4,150,634	-		GFF4126	0.47	+0.4
4,150,636	-		GFF4126	0.47	-0.9
4,150,636	-		GFF4126	0.47	-0.6
4,150,636	-		GFF4126	0.47	-0.3
4,150,641	-		GFF4126	0.48	-0.4
4,150,647	+		GFF4126	0.49	-0.9
4,150,647	+		GFF4126	0.49	-0.4
4,150,657	-		GFF4126	0.50	+0.0
4,150,666	-		GFF4126	0.51	+0.7
4,150,680	-		GFF4126	0.52	-1.8
4,150,691	+		GFF4126	0.53	-1.3
4,150,699	-		GFF4126	0.54	+1.4
4,150,725	+		GFF4126	0.57	-0.0
4,150,755	+		GFF4126	0.60	-1.6
4,150,790	-		GFF4126	0.63	-0.1
4,150,812	+		GFF4126	0.66	-0.4
4,150,812	+		GFF4126	0.66	-1.3
4,150,814	+		GFF4126	0.66	-0.2
4,150,815	-		GFF4126	0.66	+1.1
4,150,820	-		GFF4126	0.67	+0.4
4,150,836	+		GFF4126	0.68	-0.8
4,150,853	+		GFF4126	0.70	-1.1
4,150,860	+		GFF4126	0.71	-1.1
4,150,864	+		GFF4126	0.71	-0.4
4,150,864	+		GFF4126	0.71	-2.0
4,150,872	-		GFF4126	0.72	-1.6
4,150,872	-		GFF4126	0.72	-2.1
4,150,874	+		GFF4126	0.72	-0.7
4,150,882	-		GFF4126	0.73	+0.0
4,150,900	+		GFF4126	0.75	-0.6
4,150,908	-		GFF4126	0.76	-0.3
4,150,908	-		GFF4126	0.76	+0.9
4,150,910	+		GFF4126	0.76	+0.5
4,150,910	+		GFF4126	0.76	-1.9
4,150,910	+		GFF4126	0.76	-1.2
4,150,918	-		GFF4126	0.77	+0.6
4,150,918	-		GFF4126	0.77	-0.1
4,150,939	+		GFF4126	0.79	+0.7
4,150,939	+		GFF4126	0.79	-0.8
4,150,947	-		GFF4126	0.80	-0.4
4,150,947	-		GFF4126	0.80	+1.1
4,150,947	-		GFF4126	0.80	-0.1
4,150,948	+		GFF4126	0.80	-1.0
4,150,952	+		GFF4126	0.80	-0.5
4,150,952	+		GFF4126	0.80	-0.2
4,150,952	+		GFF4126	0.80	+0.2
4,150,960	-		GFF4126	0.81	+0.3
4,150,960	-		GFF4126	0.81	-0.3
4,151,006	-		GFF4126	0.86	+0.8
4,151,101	-				+1.2
4,151,105	-				-1.5
4,151,128	+				+1.0