Strain Fitness in Sphingobium sp. HT1-2 around GFF4073

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,084,611	-		GFF4071	0.66	-2.7
4,084,628	+		GFF4071	0.70	-1.7
4,084,642	+		GFF4071	0.73	-0.2
4,084,687	-		GFF4071	0.82	+0.1
4,084,698	-		GFF4071	0.84	-1.1
4,084,699	-		GFF4071	0.85	-0.9
4,084,706	-		GFF4071	0.86	-0.7
4,084,753	+				-0.2
4,084,753	+				+0.4
4,084,771	+				-1.8
4,084,774	-				+0.3
4,084,788	-				-0.8
4,084,788	-				-1.0
4,084,827	+				-0.6
4,084,827	+				-0.8
4,084,827	+				+0.1
4,084,835	-				+0.9
4,084,837	+				-2.8
4,084,863	-		GFF4072	0.12	-1.5
4,084,874	+		GFF4072	0.14	-0.8
4,084,874	+		GFF4072	0.14	-1.5
4,084,874	-		GFF4072	0.14	-2.4
4,084,879	+		GFF4072	0.15	-0.5
4,084,882	-		GFF4072	0.15	-0.8
4,084,882	-		GFF4072	0.15	+0.4
4,084,889	-		GFF4072	0.16	+0.9
4,084,905	-		GFF4072	0.18	-0.1
4,084,924	-		GFF4072	0.21	-1.2
4,084,977	+		GFF4072	0.28	-0.0
4,084,980	-		GFF4072	0.28	+0.3
4,084,986	+		GFF4072	0.29	-1.4
4,084,986	+		GFF4072	0.29	-0.8
4,084,991	+		GFF4072	0.29	-1.7
4,084,994	-		GFF4072	0.30	-0.8
4,084,994	-		GFF4072	0.30	-0.1
4,084,994	-		GFF4072	0.30	+1.5
4,084,994	-		GFF4072	0.30	-1.1
4,084,994	-		GFF4072	0.30	-0.5
4,084,998	+		GFF4072	0.30	+0.0
4,084,999	-		GFF4072	0.30	-0.8
4,084,999	-		GFF4072	0.30	-1.0
4,085,025	-		GFF4072	0.34	-0.3
4,085,048	+		GFF4072	0.37	-0.7
4,085,048	+		GFF4072	0.37	-0.7
4,085,048	+		GFF4072	0.37	+0.5
4,085,054	-		GFF4072	0.38	-0.4
4,085,056	-		GFF4072	0.38	+0.8
4,085,061	-		GFF4072	0.39	+1.5
4,085,061	-		GFF4072	0.39	-0.3
4,085,075	+		GFF4072	0.40	+0.3
4,085,086	+		GFF4072	0.42	+0.5
4,085,094	-		GFF4072	0.43	-0.4
4,085,095	-		GFF4072	0.43	+1.3
4,085,130	-		GFF4072	0.48	+0.4
4,085,143	+		GFF4072	0.49	-1.8
4,085,148	+		GFF4072	0.50	+0.1
4,085,265	-		GFF4072	0.66	+0.5
4,085,275	-		GFF4072	0.67	-0.0
4,085,280	+		GFF4072	0.68	+0.5
4,085,280	+		GFF4072	0.68	-0.0
4,085,288	-		GFF4072	0.69	+0.6
4,085,336	-		GFF4072	0.75	-1.7
4,085,351	-		GFF4072	0.77	-0.2
4,085,374	+		GFF4072	0.80	+0.9
4,085,380	+		GFF4072	0.81	-1.0
4,085,402	+		GFF4072	0.84	-0.5
4,085,433	+		GFF4072	0.88	-1.3
4,085,470	+				-0.5
4,085,470	+				-2.0
4,085,470	+				+0.6
4,085,470	+				+0.1
4,085,470	+				-0.2
4,085,470	+				-1.3
4,085,470	+				-1.3
4,085,471	-				+2.1
4,085,475	+				+0.8
4,085,478	-				+0.7
4,085,478	-				+0.1
4,085,478	-				-1.4
4,085,478	-				+0.2
4,085,478	-				+0.9
4,085,478	-				-0.2
4,085,502	-				-0.5
4,085,502	-				-0.7
4,085,502	-				+1.3
4,085,507	-				-1.1
4,085,507	-				-0.6
4,085,520	-				+0.1
4,085,525	-				-0.1
4,085,531	-				+0.5
4,085,569	-				-0.2
4,085,574	-				-0.2
4,085,603	+				+0.8
4,085,616	+				-0.7
4,085,616	+				-0.5
4,085,616	+				-0.1
4,085,616	+				-2.5
4,085,616	+				-0.1
4,085,616	+				+0.3
4,085,624	+				-0.1
4,085,625	+				+0.6
4,085,633	-				-1.1
4,085,640	+				+0.3
4,085,681	-		GFF4073	0.20	-0.1
4,085,681	-		GFF4073	0.20	-1.6
4,085,706	+		GFF4073	0.26	-0.2
4,085,706	+		GFF4073	0.26	+1.5
4,085,706	+		GFF4073	0.26	+0.1
4,085,706	+		GFF4073	0.26	+0.3
4,085,706	+		GFF4073	0.26	-0.0
4,085,706	+		GFF4073	0.26	-0.4
4,085,711	+		GFF4073	0.27	+1.1
4,085,714	-		GFF4073	0.28	-0.4
4,085,719	-		GFF4073	0.29	-1.2
4,085,721	+		GFF4073	0.30	-0.3
4,085,721	+		GFF4073	0.30	+0.1
4,085,729	-		GFF4073	0.32	-1.2
4,085,753	+		GFF4073	0.38	+0.3
4,085,762	+		GFF4073	0.40	+1.7
4,085,798	-		GFF4073	0.49	+0.2
4,085,811	+		GFF4073	0.52	-1.1
4,085,822	+		GFF4073	0.55	+1.7
4,085,842	+		GFF4073	0.60	+0.2
4,085,850	-		GFF4073	0.62	+0.2
4,085,874	+		GFF4073	0.68	+0.2
4,085,879	+		GFF4073	0.69	-0.5
4,085,879	+		GFF4073	0.69	-1.0
4,085,879	+		GFF4073	0.69	-0.3
4,085,887	-		GFF4073	0.71	+0.6
4,085,997	+				+0.2
4,085,997	+				+0.1
4,086,005	-				+0.0
4,086,007	-				+0.4
4,086,043	+				+0.7
4,086,076	-		GFF4074	0.12	-0.5
4,086,104	-		GFF4074	0.20	+0.3
4,086,258	-		GFF4074	0.64	-0.5
4,086,263	-		GFF4074	0.65	-0.7
4,086,325	+		GFF4074	0.83	+3.0
4,086,344	+		GFF4074	0.88	+0.3
4,086,371	-				+0.8
4,086,377	+				-0.9
4,086,395	-				-0.2
4,086,405	-				-0.4
4,086,414	-				+1.3
4,086,421	+				+0.2
4,086,508	+				+0.3
4,086,520	+				+0.8
4,086,525	+				+0.4
4,086,528	-				-0.9
4,086,591	+				+1.4
4,086,592	+				-0.8
4,086,592	+				-0.1
4,086,597	+				+0.9
4,086,600	-				-2.1
4,086,600	-				-2.2
4,086,602	+				+0.4
4,086,605	-				-0.5
4,086,659	+		GFF4075	0.13	-1.1
4,086,678	-		GFF4075	0.14	-1.1
4,086,694	+		GFF4075	0.15	+0.4
4,086,835	-		GFF4075	0.26	-0.1
4,086,844	-		GFF4075	0.26	-1.8
4,086,844	-		GFF4075	0.26	+0.5
4,086,859	-		GFF4075	0.28	-0.4
4,086,859	-		GFF4075	0.28	-3.1
4,086,859	-		GFF4075	0.28	-1.1
4,086,885	+		GFF4075	0.30	-0.4
4,086,885	+		GFF4075	0.30	-1.9
4,086,885	+		GFF4075	0.30	+2.0
4,086,893	-		GFF4075	0.30	-0.2
4,086,893	-		GFF4075	0.30	-1.1
4,086,893	-		GFF4075	0.30	-1.3
4,086,893	-		GFF4075	0.30	-1.7
4,086,893	-		GFF4075	0.30	-0.9
4,086,893	-		GFF4075	0.30	+0.8
4,086,893	-		GFF4075	0.30	-2.1
4,086,893	-		GFF4075	0.30	-0.0
4,086,893	-		GFF4075	0.30	+0.8
4,086,903	-		GFF4075	0.31	-0.4
4,086,903	-		GFF4075	0.31	+0.2
4,086,904	-		GFF4075	0.31	+0.0
4,086,904	-		GFF4075	0.31	-0.6
4,086,904	-		GFF4075	0.31	-0.1
4,086,904	-		GFF4075	0.31	-3.1
4,086,916	-		GFF4075	0.32	-1.7
4,086,916	-		GFF4075	0.32	+0.2
4,086,921	-		GFF4075	0.32	+0.8
4,086,921	-		GFF4075	0.32	-1.8
4,086,921	-		GFF4075	0.32	+1.1
4,086,921	-		GFF4075	0.32	-0.8
4,086,921	-		GFF4075	0.32	+2.0
4,086,921	-		GFF4075	0.32	+2.0
4,086,921	-		GFF4075	0.32	-1.4
4,086,921	-		GFF4075	0.32	-1.5
4,086,921	-		GFF4075	0.32	-2.0
4,086,968	+		GFF4075	0.36	-0.7
4,086,968	+		GFF4075	0.36	-1.1
4,086,968	+		GFF4075	0.36	-0.1
4,086,968	+		GFF4075	0.36	-1.8