Strain Fitness in Sphingobium sp. HT1-2 around GFF4005

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,035,016	+		GFF4004	0.54	+1.4
4,035,024	-		GFF4004	0.54	-0.6
4,035,024	-		GFF4004	0.54	-1.2
4,035,045	-		GFF4004	0.55	-1.8
4,035,053	+		GFF4004	0.56	-0.0
4,035,059	+		GFF4004	0.56	-0.9
4,035,060	-		GFF4004	0.56	+0.1
4,035,060	-		GFF4004	0.56	-1.1
4,035,067	-		GFF4004	0.56	-0.7
4,035,067	-		GFF4004	0.56	+1.4
4,035,079	+		GFF4004	0.57	-0.9
4,035,099	+		GFF4004	0.58	-0.3
4,035,099	+		GFF4004	0.58	+0.1
4,035,099	+		GFF4004	0.58	-0.9
4,035,099	+		GFF4004	0.58	+0.8
4,035,099	+		GFF4004	0.58	+0.8
4,035,099	+		GFF4004	0.58	-0.4
4,035,099	+		GFF4004	0.58	-0.7
4,035,099	+		GFF4004	0.58	-0.3
4,035,107	-		GFF4004	0.58	-1.1
4,035,107	-		GFF4004	0.58	-0.0
4,035,107	-		GFF4004	0.58	-1.1
4,035,107	-		GFF4004	0.58	-1.6
4,035,107	-		GFF4004	0.58	+0.1
4,035,115	-		GFF4004	0.59	+0.1
4,035,138	-		GFF4004	0.60	-2.1
4,035,138	-		GFF4004	0.60	-0.8
4,035,143	+		GFF4004	0.60	-0.4
4,035,143	+		GFF4004	0.60	-1.4
4,035,143	+		GFF4004	0.60	+0.3
4,035,151	-		GFF4004	0.60	+0.3
4,035,151	-		GFF4004	0.60	+0.2
4,035,151	-		GFF4004	0.60	-0.2
4,035,152	-		GFF4004	0.60	-0.1
4,035,152	-		GFF4004	0.60	-0.1
4,035,194	-		GFF4004	0.62	-0.4
4,035,234	-		GFF4004	0.64	-0.4
4,035,246	+		GFF4004	0.65	-0.1
4,035,250	-		GFF4004	0.65	-1.3
4,035,269	-		GFF4004	0.66	+0.5
4,035,269	-		GFF4004	0.66	+0.7
4,035,289	-		GFF4004	0.67	-0.8
4,035,302	+		GFF4004	0.67	-0.2
4,035,302	+		GFF4004	0.67	+0.3
4,035,302	+		GFF4004	0.67	-0.1
4,035,302	+		GFF4004	0.67	+1.1
4,035,302	+		GFF4004	0.67	-0.7
4,035,302	+		GFF4004	0.67	-0.3
4,035,302	+		GFF4004	0.67	-0.7
4,035,302	+		GFF4004	0.67	+0.2
4,035,307	+		GFF4004	0.67	-1.6
4,035,307	+		GFF4004	0.67	-0.1
4,035,307	+		GFF4004	0.67	-0.2
4,035,310	-		GFF4004	0.68	-1.3
4,035,310	-		GFF4004	0.68	+0.7
4,035,310	-		GFF4004	0.68	+0.3
4,035,310	-		GFF4004	0.68	+0.9
4,035,310	-		GFF4004	0.68	-0.7
4,035,310	-		GFF4004	0.68	-0.9
4,035,310	-		GFF4004	0.68	-0.4
4,035,310	-		GFF4004	0.68	-0.8
4,035,312	+		GFF4004	0.68	+0.2
4,035,313	+		GFF4004	0.68	+0.3
4,035,315	-		GFF4004	0.68	-1.5
4,035,315	-		GFF4004	0.68	+0.0
4,035,315	-		GFF4004	0.68	-0.2
4,035,321	-		GFF4004	0.68	+0.6
4,035,326	+		GFF4004	0.68	-0.3
4,035,331	+		GFF4004	0.68	+0.2
4,035,331	+		GFF4004	0.68	+0.5
4,035,333	-		GFF4004	0.69	-1.9
4,035,336	+		GFF4004	0.69	-1.8
4,035,339	-		GFF4004	0.69	-0.9
4,035,339	-		GFF4004	0.69	+0.1
4,035,339	-		GFF4004	0.69	+1.3
4,035,339	-		GFF4004	0.69	-0.4
4,035,339	-		GFF4004	0.69	-1.4
4,035,339	-		GFF4004	0.69	-0.3
4,035,341	+		GFF4004	0.69	-0.2
4,035,341	+		GFF4004	0.69	+0.0
4,035,341	+		GFF4004	0.69	-0.9
4,035,342	+		GFF4004	0.69	-0.8
4,035,342	+		GFF4004	0.69	-0.8
4,035,342	+		GFF4004	0.69	-1.2
4,035,342	+		GFF4004	0.69	-0.7
4,035,344	-		GFF4004	0.69	-2.0
4,035,352	+		GFF4004	0.69	+0.8
4,035,361	-		GFF4004	0.70	+0.4
4,035,367	+		GFF4004	0.70	+0.7
4,035,367	-		GFF4004	0.70	+0.3
4,035,402	+		GFF4004	0.72	+0.1
4,035,402	+		GFF4004	0.72	-0.7
4,035,402	+		GFF4004	0.72	+0.5
4,035,402	+		GFF4004	0.72	-0.3
4,035,402	+		GFF4004	0.72	-0.5
4,035,402	+		GFF4004	0.72	+0.1
4,035,402	+		GFF4004	0.72	+0.2
4,035,402	+		GFF4004	0.72	-0.8
4,035,402	+		GFF4004	0.72	+0.4
4,035,402	+		GFF4004	0.72	-0.2
4,035,410	-		GFF4004	0.72	+0.8
4,035,410	-		GFF4004	0.72	-1.1
4,035,410	-		GFF4004	0.72	-2.0
4,035,410	-		GFF4004	0.72	+0.1
4,035,410	-		GFF4004	0.72	+0.4
4,035,410	-		GFF4004	0.72	-0.4
4,035,410	-		GFF4004	0.72	+0.1
4,035,410	-		GFF4004	0.72	-0.3
4,035,410	-		GFF4004	0.72	+0.5
4,035,410	-		GFF4004	0.72	+0.2
4,035,410	-		GFF4004	0.72	-1.7
4,035,411	+		GFF4004	0.72	+0.2
4,035,419	-		GFF4004	0.73	+0.2
4,035,437	+		GFF4004	0.73	-0.6
4,035,444	-		GFF4004	0.74	+0.0
4,035,444	-		GFF4004	0.74	+0.2
4,035,457	+		GFF4004	0.74	+0.4
4,035,457	+		GFF4004	0.74	+0.2
4,035,460	-		GFF4004	0.74	-0.5
4,035,465	-		GFF4004	0.75	+0.8
4,035,465	-		GFF4004	0.75	+0.1
4,035,465	-		GFF4004	0.75	-0.4
4,035,465	-		GFF4004	0.75	+0.3
4,035,465	-		GFF4004	0.75	+0.5
4,035,467	+		GFF4004	0.75	-0.8
4,035,467	+		GFF4004	0.75	-0.5
4,035,475	-		GFF4004	0.75	+1.2
4,035,475	-		GFF4004	0.75	+0.8
4,035,475	-		GFF4004	0.75	-1.2
4,035,485	+		GFF4004	0.76	+0.7
4,035,485	+		GFF4004	0.76	+0.1
4,035,493	-		GFF4004	0.76	-0.7
4,035,496	+		GFF4004	0.76	+0.9
4,035,513	-		GFF4004	0.77	-0.1
4,035,520	+		GFF4004	0.77	+1.9
4,035,520	+		GFF4004	0.77	-0.2
4,035,528	-		GFF4004	0.77	+0.5
4,035,536	+		GFF4004	0.78	+0.2
4,035,536	+		GFF4004	0.78	-0.8
4,035,536	+		GFF4004	0.78	-0.6
4,035,536	+		GFF4004	0.78	+0.7
4,035,536	+		GFF4004	0.78	+0.9
4,035,544	-		GFF4004	0.78	+0.0
4,035,558	+		GFF4004	0.79	-0.2
4,035,558	+		GFF4004	0.79	-0.7
4,035,558	+		GFF4004	0.79	+0.5
4,035,563	+		GFF4004	0.79	-1.0
4,035,571	-		GFF4004	0.79	+0.8
4,035,621	-		GFF4004	0.82	+0.8
4,035,629	+		GFF4004	0.82	-0.8
4,035,629	+		GFF4004	0.82	-0.6
4,035,631	+		GFF4004	0.82	-0.4
4,035,637	-		GFF4004	0.82	-0.2
4,035,637	-		GFF4004	0.82	-0.3
4,035,647	-		GFF4004	0.83	-0.0
4,035,651	-		GFF4004	0.83	-0.4
4,035,673	-		GFF4004	0.84	-0.3
4,035,674	-		GFF4004	0.84	+0.1
4,035,677	+		GFF4004	0.84	+1.4
4,035,677	+		GFF4004	0.84	-0.8
4,035,683	+		GFF4004	0.85	-2.0
4,035,707	+		GFF4004	0.86	-1.1
4,035,715	-		GFF4004	0.86	-0.5
4,035,715	-		GFF4004	0.86	+0.4
4,035,717	+		GFF4004	0.86	-0.9
4,035,725	-		GFF4004	0.86	-0.5
4,035,756	+		GFF4004	0.88	-1.2
4,035,764	-		GFF4004	0.88	+0.2
4,035,764	-		GFF4004	0.88	-0.1
4,035,766	+		GFF4004	0.88	+1.1
4,035,774	-		GFF4004	0.89	-0.5
4,035,774	-		GFF4004	0.89	-2.4
4,035,778	-		GFF4004	0.89	-0.8
4,035,779	+		GFF4004	0.89	-1.3
4,035,789	+		GFF4004	0.89	-0.2
4,035,792	-		GFF4004	0.90	-0.8
4,035,792	-		GFF4004	0.90	-1.2
4,035,797	-		GFF4004	0.90	+0.1
4,035,812	-				+0.4
4,035,812	-				+0.3
4,035,823	+				-0.5
4,035,824	-				-0.0
4,035,824	-				-0.1
4,035,824	-				-0.9
4,035,826	+				-2.0
4,035,846	+				-0.9
4,035,921	+				-0.2
4,035,923	-				+0.3
4,035,929	-				-0.7
4,035,933	+				+0.2
4,035,985	-				+1.0
4,035,997	+				-0.4
4,036,002	+				+0.0
4,036,005	-				-1.4
4,036,006	+				+1.9
4,036,007	+				-0.1
4,036,007	+				-1.0
4,036,007	+				-0.9
4,036,007	+				+1.5
4,036,007	+				-0.9
4,036,007	+				+0.8
4,036,007	+				+0.6
4,036,007	+				-0.5
4,036,007	+				+0.6
4,036,007	+				-1.4
4,036,007	+				+0.4
4,036,007	-				+1.0
4,036,010	-				-0.4
4,036,012	+				+0.6
4,036,015	-				+0.2
4,036,015	-				-0.6
4,036,015	-				-0.8
4,036,015	-				-0.1
4,036,015	-				-0.5
4,036,015	-				-0.0
4,036,015	-				+0.4
4,036,015	-				-0.8
4,036,015	-				+1.4
4,036,015	-				+0.4
4,036,015	-				+1.2
4,036,015	-				+0.7
4,036,015	-				-0.6
4,036,015	-				+0.3
4,036,015	-				-1.0
4,036,020	-				-1.0
4,036,020	-				-0.8
4,036,025	-				-0.2
4,036,045	-				+0.4
4,036,053	-				-1.4
4,036,055	+				-0.0
4,036,058	-				-0.6
4,036,063	-				-0.6
4,036,071	-		GFF4005	0.11	-0.4
4,036,073	+		GFF4005	0.11	+1.5
4,036,102	-		GFF4005	0.16	-0.3
4,036,107	+		GFF4005	0.17	-0.9
4,036,107	+		GFF4005	0.17	-0.7
4,036,107	+		GFF4005	0.17	-1.0
4,036,109	+		GFF4005	0.17	-0.7
4,036,115	-		GFF4005	0.18	+0.5
4,036,121	-		GFF4005	0.19	-1.6
4,036,126	+		GFF4005	0.20	+0.9
4,036,145	+		GFF4005	0.23	-2.6
4,036,152	-		GFF4005	0.24	-1.2
4,036,160	+		GFF4005	0.25	-0.3
4,036,168	-		GFF4005	0.26	-2.1
4,036,181	+		GFF4005	0.29	+0.4
4,036,181	+		GFF4005	0.29	-1.0
4,036,190	+		GFF4005	0.30	+0.4
4,036,190	+		GFF4005	0.30	-0.4
4,036,190	+		GFF4005	0.30	-0.2
4,036,191	+		GFF4005	0.30	+0.1
4,036,198	-		GFF4005	0.31	+1.8
4,036,206	-		GFF4005	0.33	+1.0
4,036,215	+		GFF4005	0.34	+0.3
4,036,215	+		GFF4005	0.34	+0.2
4,036,217	-		GFF4005	0.34	-0.0
4,036,219	+		GFF4005	0.35	-0.5
4,036,219	+		GFF4005	0.35	+0.4
4,036,221	-		GFF4005	0.35	+0.2
4,036,222	-		GFF4005	0.35	-0.7
4,036,232	-		GFF4005	0.37	+0.6
4,036,239	+		GFF4005	0.38	-3.0
4,036,240	-		GFF4005	0.38	-0.1
4,036,245	+		GFF4005	0.39	-0.2
4,036,247	-		GFF4005	0.39	-0.2
4,036,247	-		GFF4005	0.39	-0.1
4,036,248	+		GFF4005	0.39	-0.5
4,036,266	+		GFF4005	0.42	+0.6
4,036,266	+		GFF4005	0.42	-1.4
4,036,266	+		GFF4005	0.42	-2.5
4,036,266	+		GFF4005	0.42	+0.2
4,036,266	+		GFF4005	0.42	-0.2
4,036,266	+		GFF4005	0.42	-0.2
4,036,266	+		GFF4005	0.42	-1.1
4,036,271	+		GFF4005	0.43	+0.1
4,036,274	-		GFF4005	0.43	-0.5
4,036,274	-		GFF4005	0.43	+0.3
4,036,274	-		GFF4005	0.43	+1.1
4,036,274	-		GFF4005	0.43	-1.0
4,036,284	+		GFF4005	0.45	+0.3
4,036,288	-		GFF4005	0.46	+1.0
4,036,297	-		GFF4005	0.47	-0.0
4,036,315	+		GFF4005	0.50	-0.6
4,036,370	-		GFF4005	0.59	-0.1
4,036,399	-		GFF4005	0.64	-0.7
4,036,406	-		GFF4005	0.65	+0.6
4,036,407	+		GFF4005	0.65	-1.5
4,036,413	+		GFF4005	0.66	+0.5
4,036,413	+		GFF4005	0.66	+0.2
4,036,421	-		GFF4005	0.67	+1.5
4,036,435	+		GFF4005	0.69	+0.2
4,036,435	+		GFF4005	0.69	-0.0
4,036,457	+		GFF4005	0.73	+0.5
4,036,464	+		GFF4005	0.74	-0.4
4,036,468	+		GFF4005	0.75	-0.4
4,036,477	+		GFF4005	0.76	-1.3
4,036,477	+		GFF4005	0.76	+0.1
4,036,485	-		GFF4005	0.77	-0.8
4,036,518	+		GFF4005	0.83	-1.5
4,036,518	+		GFF4005	0.83	-2.0
4,036,526	-		GFF4005	0.84	+0.4
4,036,528	+		GFF4005	0.84	+0.6
4,036,538	+		GFF4005	0.86	-1.5
4,036,538	+		GFF4005	0.86	+0.1
4,036,563	+				-1.7
4,036,571	-				-0.7
4,036,571	-				-0.0
4,036,571	-				-0.5
4,036,589	+				-0.6
4,036,607	+				-0.1
4,036,616	-				+0.3
4,036,619	+				+0.7
4,036,619	+				-0.2
4,036,620	+				-0.1
4,036,622	-				-0.2
4,036,626	+				+0.3
4,036,627	-				+0.2
4,036,627	-				-1.3
4,036,634	-				-1.7
4,036,644	-				+1.2
4,036,645	+				-0.7
4,036,655	-				-0.1
4,036,660	-				+0.8
4,036,660	-				+0.9
4,036,660	-				+0.4
4,036,665	-				-0.3
4,036,665	-				+0.1
4,036,665	-				+0.4
4,036,667	-				+0.6
4,036,669	+				-0.3
4,036,669	+				-1.1
4,036,670	-				+0.6
4,036,672	-				+1.1
4,036,672	-				-0.3
4,036,672	-				+0.5
4,036,674	+				-1.3
4,036,697	+				+0.7
4,036,697	+				+0.6
4,036,705	-				-0.3
4,036,705	-				-1.3
4,036,705	-				-0.8
4,036,705	-				-1.4
4,036,705	-				+0.1
4,036,710	-				-1.1
4,036,710	-				+0.4
4,036,710	-				+1.1
4,036,710	-				-1.3
4,036,767	-				+0.6
4,036,809	-				-2.3
4,036,810	-				-0.4
4,036,814	+				+0.3
4,036,824	+				+0.5
4,036,824	+				+0.7
4,036,830	-				-0.0
4,036,832	-				+0.3
4,036,865	-				+0.3
4,036,887	+				+0.2
4,036,899	+				+0.4
4,036,899	+				-2.0
4,036,901	+				+0.0
4,036,901	+				-1.4
4,036,907	-				-0.6
4,036,909	-				+0.1
4,036,914	+				+2.0
4,036,915	+				-0.3
4,036,915	+				-1.0
4,036,915	+				+0.9
4,036,920	-				+0.1
4,036,922	-				-0.4
4,036,930	+				-1.7
4,036,930	+				+1.0
4,036,938	-		GFF4006	0.11	+0.4
4,036,938	-		GFF4006	0.11	+0.0
4,036,938	-		GFF4006	0.11	-0.8
4,036,945	+		GFF4006	0.12	-0.2
4,036,947	+		GFF4006	0.12	-0.8
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