Strain Fitness in Sphingobium sp. HT1-2 around GFF3994

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,026,498	+		GFF3993	0.17	-1.3
4,026,498	+		GFF3993	0.17	-1.8
4,026,498	-		GFF3993	0.17	-3.2
4,026,499	-		GFF3993	0.17	-1.5
4,026,508	-		GFF3993	0.18	+0.4
4,026,508	-		GFF3993	0.18	-0.5
4,026,510	+		GFF3993	0.18	-0.5
4,026,529	+		GFF3993	0.20	-1.4
4,026,529	+		GFF3993	0.20	+1.4
4,026,535	+		GFF3993	0.20	-1.1
4,026,538	+		GFF3993	0.20	+0.0
4,026,546	-		GFF3993	0.21	-1.0
4,026,560	-		GFF3993	0.22	-0.4
4,026,562	+		GFF3993	0.22	-0.5
4,026,562	+		GFF3993	0.22	+0.4
4,026,599	+		GFF3993	0.25	+0.3
4,026,604	+		GFF3993	0.26	-0.4
4,026,604	-		GFF3993	0.26	+0.2
4,026,609	+		GFF3993	0.26	-1.8
4,026,612	-		GFF3993	0.27	+0.1
4,026,612	-		GFF3993	0.27	+1.2
4,026,614	+		GFF3993	0.27	+1.0
4,026,614	+		GFF3993	0.27	-0.2
4,026,614	+		GFF3993	0.27	-0.8
4,026,619	+		GFF3993	0.27	+0.2
4,026,619	+		GFF3993	0.27	+0.1
4,026,619	+		GFF3993	0.27	+1.8
4,026,619	+		GFF3993	0.27	+0.7
4,026,622	-		GFF3993	0.27	-1.0
4,026,622	-		GFF3993	0.27	-1.9
4,026,624	+		GFF3993	0.28	-1.5
4,026,625	+		GFF3993	0.28	+0.8
4,026,627	-		GFF3993	0.28	-1.0
4,026,627	-		GFF3993	0.28	+0.4
4,026,633	-		GFF3993	0.28	-1.9
4,026,634	+		GFF3993	0.28	-1.0
4,026,637	+		GFF3993	0.29	+1.5
4,026,637	+		GFF3993	0.29	+0.3
4,026,645	-		GFF3993	0.29	+0.6
4,026,661	+		GFF3993	0.31	-0.2
4,026,696	-		GFF3993	0.34	+1.0
4,026,714	-		GFF3993	0.35	-1.1
4,026,714	-		GFF3993	0.35	-0.2
4,026,720	+		GFF3993	0.36	+0.5
4,026,721	-		GFF3993	0.36	+0.4
4,026,721	-		GFF3993	0.36	+0.5
4,026,728	-		GFF3993	0.36	+0.9
4,026,738	-		GFF3993	0.37	-0.1
4,026,741	+		GFF3993	0.37	+0.7
4,026,746	+		GFF3993	0.38	-1.2
4,026,749	-		GFF3993	0.38	-0.5
4,026,750	+		GFF3993	0.38	-0.8
4,026,758	-		GFF3993	0.39	-0.0
4,026,758	-		GFF3993	0.39	-0.7
4,026,765	+		GFF3993	0.39	-0.2
4,026,768	-		GFF3993	0.40	+0.2
4,026,768	-		GFF3993	0.40	-0.0
4,026,775	-		GFF3993	0.40	-1.5
4,026,788	-		GFF3993	0.41	-1.2
4,026,788	-		GFF3993	0.41	-0.8
4,026,788	-		GFF3993	0.41	-0.2
4,026,788	-		GFF3993	0.41	-0.7
4,026,796	-		GFF3993	0.42	-1.4
4,026,797	+		GFF3993	0.42	+0.2
4,026,823	+		GFF3993	0.44	+0.4
4,026,831	-		GFF3993	0.45	-0.4
4,026,831	-		GFF3993	0.45	+0.6
4,026,838	+		GFF3993	0.46	+0.5
4,026,845	-		GFF3993	0.46	-1.0
4,026,846	+		GFF3993	0.46	+0.5
4,026,851	+		GFF3993	0.47	-0.9
4,026,868	+		GFF3993	0.48	-1.2
4,026,884	+		GFF3993	0.49	-0.4
4,026,895	+		GFF3993	0.50	-1.0
4,026,898	-		GFF3993	0.51	-0.1
4,026,903	-		GFF3993	0.51	-2.7
4,026,903	-		GFF3993	0.51	-1.9
4,026,919	+		GFF3993	0.52	-0.2
4,026,965	+		GFF3993	0.56	-0.8
4,026,971	+		GFF3993	0.57	-2.1
4,026,973	-		GFF3993	0.57	+1.2
4,026,999	-		GFF3993	0.59	-1.4
4,027,002	+		GFF3993	0.59	-1.2
4,027,002	+		GFF3993	0.59	+0.4
4,027,010	-		GFF3993	0.60	+0.4
4,027,010	-		GFF3993	0.60	+0.4
4,027,010	-		GFF3993	0.60	+0.3
4,027,010	-		GFF3993	0.60	+1.3
4,027,010	-		GFF3993	0.60	+0.5
4,027,010	-		GFF3993	0.60	+1.7
4,027,010	-		GFF3993	0.60	-1.6
4,027,030	+		GFF3993	0.62	+0.0
4,027,030	+		GFF3993	0.62	-1.8
4,027,030	+		GFF3993	0.62	-2.2
4,027,030	+		GFF3993	0.62	+0.8
4,027,030	+		GFF3993	0.62	-0.4
4,027,030	+		GFF3993	0.62	-0.8
4,027,032	+		GFF3993	0.62	-1.7
4,027,032	+		GFF3993	0.62	-0.9
4,027,037	+		GFF3993	0.62	-0.4
4,027,037	+		GFF3993	0.62	+0.4
4,027,038	+		GFF3993	0.62	-0.0
4,027,038	+		GFF3993	0.62	+0.8
4,027,038	-		GFF3993	0.62	+0.2
4,027,038	-		GFF3993	0.62	-0.8
4,027,040	-		GFF3993	0.62	-0.6
4,027,040	-		GFF3993	0.62	+0.5
4,027,046	-		GFF3993	0.63	+0.8
4,027,064	+		GFF3993	0.64	-0.1
4,027,069	+		GFF3993	0.65	-0.0
4,027,071	+		GFF3993	0.65	-0.5
4,027,071	+		GFF3993	0.65	-0.6
4,027,071	+		GFF3993	0.65	+0.9
4,027,071	+		GFF3993	0.65	-0.1
4,027,071	+		GFF3993	0.65	-1.2
4,027,071	+		GFF3993	0.65	+0.4
4,027,072	-		GFF3993	0.65	-2.6
4,027,079	-		GFF3993	0.66	+0.7
4,027,079	-		GFF3993	0.66	-0.4
4,027,079	-		GFF3993	0.66	-1.0
4,027,079	-		GFF3993	0.66	+0.2
4,027,079	-		GFF3993	0.66	-2.3
4,027,079	-		GFF3993	0.66	+0.2
4,027,081	+		GFF3993	0.66	+1.0
4,027,089	-		GFF3993	0.67	-1.7
4,027,094	-		GFF3993	0.67	+0.2
4,027,107	-		GFF3993	0.68	+0.3
4,027,121	+		GFF3993	0.69	-0.4
4,027,121	+		GFF3993	0.69	-0.8
4,027,121	+		GFF3993	0.69	-0.9
4,027,125	-		GFF3993	0.70	-1.5
4,027,129	-		GFF3993	0.70	+1.4
4,027,129	-		GFF3993	0.70	-0.9
4,027,129	-		GFF3993	0.70	-0.4
4,027,135	-		GFF3993	0.70	-0.2
4,027,151	+		GFF3993	0.72	-0.0
4,027,159	-		GFF3993	0.72	-0.7
4,027,170	-		GFF3993	0.73	+0.6
4,027,178	-		GFF3993	0.74	-0.3
4,027,178	-		GFF3993	0.74	+0.1
4,027,189	-		GFF3993	0.75	-1.3
4,027,193	-		GFF3993	0.75	-0.4
4,027,207	-		GFF3993	0.76	-0.5
4,027,222	+		GFF3993	0.78	-0.6
4,027,222	+		GFF3993	0.78	+1.3
4,027,226	+		GFF3993	0.78	-0.4
4,027,243	+		GFF3993	0.80	+0.4
4,027,267	+		GFF3993	0.82	-0.9
4,027,280	+		GFF3993	0.83	+0.3
4,027,285	+		GFF3993	0.83	+0.2
4,027,285	+		GFF3993	0.83	-1.3
4,027,285	+		GFF3993	0.83	+0.5
4,027,285	+		GFF3993	0.83	-0.5
4,027,285	+		GFF3993	0.83	+0.6
4,027,293	-		GFF3993	0.84	-1.3
4,027,306	+		GFF3993	0.85	+0.5
4,027,314	-		GFF3993	0.85	+0.1
4,027,314	-		GFF3993	0.85	-1.7
4,027,337	-		GFF3993	0.87	-0.1
4,027,356	+		GFF3993	0.89	+0.4
4,027,364	-		GFF3993	0.90	+2.1
4,027,368	-				-1.7
4,027,369	-				+0.2
4,027,370	-				-0.3
4,027,370	-				-0.2
4,027,370	-				-0.3
4,027,375	+				+1.2
4,027,380	+				-0.0
4,027,380	+				+1.6
4,027,383	-				+0.1
4,027,383	-				-0.2
4,027,407	-				-2.5
4,027,415	-				+0.4
4,027,420	+				+0.6
4,027,430	+				-1.6
4,027,435	-				-1.8
4,027,435	-				-0.4
4,027,435	-				+0.4
4,027,435	-				+0.7
4,027,437	+				+0.4
4,027,439	+				+0.6
4,027,442	+				-0.7
4,027,445	-				-1.2
4,027,454	+				-1.7
4,027,462	-				+0.1
4,027,481	+				+1.1
4,027,481	+				-0.6
4,027,487	+				+0.6
4,027,487	+				-0.9
4,027,488	+				-0.6
4,027,488	+				-1.6
4,027,488	+				+0.0
4,027,488	+				-1.0
4,027,488	+				+0.6
4,027,488	+				-0.3
4,027,496	-				-0.4
4,027,496	-				-1.6
4,027,496	-				-1.8
4,027,497	+				-1.0
4,027,503	+				-1.5
4,027,503	+				-2.5
4,027,511	-				-0.4
4,027,515	-				-0.7
4,027,532	-		GFF3994	0.16	-0.1
4,027,533	+		GFF3994	0.16	-2.0
4,027,541	+		GFF3994	0.20	-2.0
4,027,543	+		GFF3994	0.20	-2.0
4,027,573	-		GFF3994	0.32	-0.2
4,027,574	+		GFF3994	0.32	-2.4
4,027,580	+		GFF3994	0.34	+1.6
4,027,582	-		GFF3994	0.35	-0.8
4,027,602	+		GFF3994	0.43	-1.0
4,027,607	+		GFF3994	0.45	-1.1
4,027,609	-		GFF3994	0.46	-1.6
4,027,610	-		GFF3994	0.46	+0.2
4,027,626	+		GFF3994	0.52	-0.3
4,027,627	-		GFF3994	0.52	+0.1
4,027,629	-		GFF3994	0.53	+1.3
4,027,630	-		GFF3994	0.54	+0.9
4,027,638	-		GFF3994	0.57	-0.5
4,027,647	+		GFF3994	0.60	-1.0
4,027,654	-		GFF3994	0.63	-0.9
4,027,655	-		GFF3994	0.63	+0.2
4,027,662	+		GFF3994	0.66	+1.9
4,027,663	+		GFF3994	0.66	+0.6
4,027,663	+		GFF3994	0.66	-0.9
4,027,665	-		GFF3994	0.67	-0.5
4,027,671	-		GFF3994	0.69	+0.7
4,027,686	+		GFF3994	0.75	+1.8
4,027,686	-		GFF3994	0.75	-2.4
4,027,718	+		GFF3994	0.87	-0.9
4,027,718	+		GFF3994	0.87	-0.4
4,027,721	-		GFF3994	0.89	-0.2
4,027,726	-				-0.2
4,027,731	+				-0.7
4,027,750	+				-2.2
4,027,753	+				-1.6
4,027,755	+				+0.3
4,027,763	-				-2.2
4,027,766	+				+1.1
4,027,773	-				+0.3
4,027,776	+				+0.1
4,027,779	-				-1.0
4,027,784	-				+0.9
4,027,802	+				-0.9
4,027,806	-				-0.0
4,027,820	+		GFF3995	0.11	-0.0
4,027,822	+		GFF3995	0.12	-0.4
4,027,824	+		GFF3995	0.12	+0.3
4,027,824	+		GFF3995	0.12	+1.5
4,027,832	-		GFF3995	0.14	-2.2
4,027,839	+		GFF3995	0.15	-1.4
4,027,839	+		GFF3995	0.15	+0.2
4,027,847	-		GFF3995	0.17	-0.8
4,027,855	-		GFF3995	0.19	-1.5
4,027,886	+		GFF3995	0.25	-0.8
4,027,891	+		GFF3995	0.26	+0.8
4,027,899	-		GFF3995	0.28	-2.1
4,027,901	+		GFF3995	0.28	+0.9
4,027,909	-		GFF3995	0.30	+0.9
4,027,911	-		GFF3995	0.30	-0.4
4,027,913	+		GFF3995	0.31	-0.4
4,027,918	+		GFF3995	0.32	+0.9
4,027,926	-		GFF3995	0.34	+0.6
4,027,926	-		GFF3995	0.34	-0.3
4,027,938	+		GFF3995	0.36	-1.0
4,027,938	+		GFF3995	0.36	-0.2
4,027,938	+		GFF3995	0.36	-0.4
4,027,941	-		GFF3995	0.37	-0.0
4,027,946	-		GFF3995	0.38	-1.0
4,027,946	-		GFF3995	0.38	-0.5
4,027,946	-		GFF3995	0.38	+0.4
4,027,946	-		GFF3995	0.38	+0.6
4,027,946	-		GFF3995	0.38	-2.0
4,027,959	-		GFF3995	0.41	-0.4
4,027,971	+		GFF3995	0.43	-0.7
4,027,981	-		GFF3995	0.45	-1.5
4,027,983	-		GFF3995	0.46	+1.0
4,027,985	+		GFF3995	0.46	-0.2
4,027,985	+		GFF3995	0.46	-0.2
4,027,985	+		GFF3995	0.46	-0.5
4,027,985	+		GFF3995	0.46	-0.2
4,027,985	+		GFF3995	0.46	-0.6
4,027,991	+		GFF3995	0.47	-0.0
4,027,993	-		GFF3995	0.48	+0.3
4,027,993	-		GFF3995	0.48	-0.6
4,027,995	+		GFF3995	0.48	+1.1
4,028,003	-		GFF3995	0.50	+0.4
4,028,008	+		GFF3995	0.51	+0.6
4,028,021	+		GFF3995	0.54	+0.0
4,028,026	+		GFF3995	0.55	-0.7
4,028,026	+		GFF3995	0.55	-0.5
4,028,028	+		GFF3995	0.55	-0.3
4,028,028	+		GFF3995	0.55	-0.2
4,028,034	-		GFF3995	0.56	-0.9
4,028,036	-		GFF3995	0.57	+0.2
4,028,036	-		GFF3995	0.57	-0.1
4,028,036	-		GFF3995	0.57	-0.7
4,028,036	-		GFF3995	0.57	+0.2
4,028,058	-		GFF3995	0.61	+0.8
4,028,060	+		GFF3995	0.62	-0.6
4,028,060	+		GFF3995	0.62	-1.2
4,028,060	+		GFF3995	0.62	-0.0
4,028,068	-		GFF3995	0.64	+0.4
4,028,068	-		GFF3995	0.64	+0.8
4,028,068	-		GFF3995	0.64	-0.8
4,028,068	-		GFF3995	0.64	+0.4
4,028,068	-		GFF3995	0.64	-1.3
4,028,068	-		GFF3995	0.64	+0.5
4,028,070	-		GFF3995	0.64	-1.6
4,028,072	+		GFF3995	0.64	+0.4
4,028,072	+		GFF3995	0.64	-1.5
4,028,080	-		GFF3995	0.66	+0.1
4,028,080	-		GFF3995	0.66	+1.1
4,028,085	-		GFF3995	0.67	-0.2
4,028,085	-		GFF3995	0.67	+0.5
4,028,102	+		GFF3995	0.71	+0.2
4,028,105	-		GFF3995	0.71	+0.1
4,028,105	-		GFF3995	0.71	-1.0
4,028,115	-		GFF3995	0.73	-0.0
4,028,117	-		GFF3995	0.74	+0.3
4,028,127	-		GFF3995	0.76	+1.6
4,028,132	-		GFF3995	0.77	-1.9
4,028,152	+		GFF3995	0.81	-0.5
4,028,154	+		GFF3995	0.82	-1.2
4,028,154	+		GFF3995	0.82	+0.5
4,028,154	+		GFF3995	0.82	+0.9
4,028,157	+		GFF3995	0.82	+0.3
4,028,162	-		GFF3995	0.83	-0.3
4,028,162	-		GFF3995	0.83	-0.4
4,028,165	+		GFF3995	0.84	-0.2
4,028,167	+		GFF3995	0.84	+0.4
4,028,199	+				-1.1
4,028,199	+				+0.2
4,028,199	+				+0.9
4,028,199	+				-0.8
4,028,207	-				-1.2
4,028,207	-				+0.1
4,028,231	+				-0.5
4,028,233	-				-0.1
4,028,233	-				+0.1
4,028,288	+		GFF3996	0.16	-0.4
4,028,296	-		GFF3996	0.18	+0.8
4,028,296	-		GFF3996	0.18	-1.0
4,028,296	-		GFF3996	0.18	-1.2
4,028,296	-		GFF3996	0.18	+0.2
4,028,296	-		GFF3996	0.18	-0.2
4,028,306	+		GFF3996	0.21	-0.7
4,028,306	+		GFF3996	0.21	-0.1
4,028,314	-		GFF3996	0.24	-0.5
4,028,314	-		GFF3996	0.24	-1.1
4,028,325	+		GFF3996	0.27	+0.1
4,028,329	+		GFF3996	0.28	+0.5
4,028,329	+		GFF3996	0.28	+0.7
4,028,329	+		GFF3996	0.28	+0.4
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