Strain Fitness in Sphingobium sp. HT1-2 around GFF3949

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,987,136	+		GFF3948	0.26	-0.6
3,987,136	+		GFF3948	0.26	+0.0
3,987,169	+		GFF3948	0.29	-1.2
3,987,171	+		GFF3948	0.29	+1.5
3,987,171	+		GFF3948	0.29	+0.2
3,987,176	+		GFF3948	0.29	+0.9
3,987,176	+		GFF3948	0.29	-0.3
3,987,184	-		GFF3948	0.30	+0.4
3,987,199	+		GFF3948	0.31	+0.1
3,987,206	+		GFF3948	0.32	-0.0
3,987,242	-		GFF3948	0.35	-1.0
3,987,278	+		GFF3948	0.37	-0.1
3,987,331	-		GFF3948	0.42	+0.1
3,987,333	+		GFF3948	0.42	-0.5
3,987,348	-		GFF3948	0.43	-0.4
3,987,350	-		GFF3948	0.43	-1.6
3,987,373	-		GFF3948	0.45	-1.2
3,987,406	+		GFF3948	0.48	+0.8
3,987,414	-		GFF3948	0.48	+1.1
3,987,414	-		GFF3948	0.48	-0.6
3,987,470	+		GFF3948	0.53	+1.1
3,987,471	-		GFF3948	0.53	-0.1
3,987,478	-		GFF3948	0.53	+0.2
3,987,478	-		GFF3948	0.53	-1.5
3,987,488	-		GFF3948	0.54	+1.4
3,987,494	-		GFF3948	0.55	-1.0
3,987,516	+		GFF3948	0.56	-0.1
3,987,523	-		GFF3948	0.57	+0.5
3,987,529	+		GFF3948	0.57	+0.0
3,987,537	-		GFF3948	0.58	-0.6
3,987,537	-		GFF3948	0.58	-1.9
3,987,593	+		GFF3948	0.63	-0.2
3,987,594	-		GFF3948	0.63	+0.8
3,987,600	-		GFF3948	0.63	+0.4
3,987,602	-		GFF3948	0.63	-0.1
3,987,625	-		GFF3948	0.65	+1.6
3,987,672	+		GFF3948	0.69	+0.2
3,987,674	+		GFF3948	0.69	-1.5
3,987,682	-		GFF3948	0.70	-0.3
3,987,698	-		GFF3948	0.71	+0.2
3,987,699	+		GFF3948	0.71	-2.1
3,987,703	-		GFF3948	0.71	-0.8
3,987,703	-		GFF3948	0.71	-0.6
3,987,709	+		GFF3948	0.72	+0.4
3,987,712	-		GFF3948	0.72	+0.4
3,987,717	-		GFF3948	0.72	+1.3
3,987,719	+		GFF3948	0.73	-0.5
3,987,726	-		GFF3948	0.73	-1.0
3,987,727	-		GFF3948	0.73	-0.8
3,987,727	-		GFF3948	0.73	+0.6
3,987,729	+		GFF3948	0.73	+0.0
3,987,754	+		GFF3948	0.75	+0.8
3,987,760	+		GFF3948	0.76	+0.1
3,987,761	-		GFF3948	0.76	-0.7
3,987,780	+		GFF3948	0.77	-0.5
3,987,788	+		GFF3948	0.78	-1.0
3,987,796	-		GFF3948	0.79	-0.9
3,987,798	+		GFF3948	0.79	+0.4
3,987,798	+		GFF3948	0.79	-0.8
3,987,806	-		GFF3948	0.80	+1.3
3,987,806	-		GFF3948	0.80	+0.3
3,987,806	-		GFF3948	0.80	+0.9
3,987,806	-		GFF3948	0.80	+0.4
3,987,806	-		GFF3948	0.80	+0.1
3,987,806	-		GFF3948	0.80	-0.7
3,987,806	-		GFF3948	0.80	+0.8
3,987,867	+		GFF3948	0.84	-0.0
3,987,875	-		GFF3948	0.85	-0.3
3,987,919	+		GFF3948	0.89	-0.6
3,987,919	+		GFF3948	0.89	-0.9
3,987,924	+		GFF3948	0.89	-0.9
3,987,927	-		GFF3948	0.89	-1.2
3,987,929	+		GFF3948	0.89	+0.0
3,987,932	-		GFF3948	0.90	-0.1
3,987,932	-		GFF3948	0.90	+1.3
3,987,932	-		GFF3948	0.90	+0.3
3,987,932	-		GFF3948	0.90	-0.8
3,987,937	-				+0.2
3,987,970	-				-1.6
3,987,982	+				+0.2
3,987,982	+				+0.4
3,987,982	+				-0.6
3,987,982	+				+0.7
3,987,982	+				-0.1
3,987,982	+				+0.2
3,987,990	-				-1.2
3,987,990	-				-0.2
3,987,990	-				+0.8
3,987,990	-				-0.4
3,987,990	-				+0.0
3,987,990	-				-1.0
3,987,990	-				+0.4
3,987,990	-				-1.6
3,987,996	+				-0.9
3,988,002	+				-2.1
3,988,010	-				+0.7
3,988,016	+				+0.6
3,988,033	+				-0.0
3,988,035	+				+0.4
3,988,035	+				+0.3
3,988,039	-				+0.0
3,988,043	-				+0.7
3,988,051	+				+0.1
3,988,051	+				-1.2
3,988,059	-				+1.1
3,988,061	-				-0.9
3,988,061	-				-1.6
3,988,069	-				+1.0
3,988,104	-				+1.4
3,988,116	-				-0.4
3,988,120	+				+0.4
3,988,120	+				-0.6
3,988,120	+				+0.4
3,988,122	+				+1.2
3,988,122	+				+0.2
3,988,122	+				-0.1
3,988,122	+				-1.2
3,988,128	-				+1.7
3,988,128	-				-0.9
3,988,128	-				-0.0
3,988,128	-				-0.4
3,988,128	-				+0.8
3,988,128	-				+1.2
3,988,128	-				-1.3
3,988,128	-				-0.3
3,988,140	+				-1.3
3,988,140	+				-1.3
3,988,202	+		GFF3949	0.16	-1.5
3,988,245	+		GFF3949	0.23	-1.6
3,988,253	-		GFF3949	0.24	-1.2
3,988,253	-		GFF3949	0.24	+1.4
3,988,253	-		GFF3949	0.24	-0.4
3,988,253	-		GFF3949	0.24	-1.3
3,988,253	-		GFF3949	0.24	-1.5
3,988,485	-		GFF3949	0.64	+0.7
3,988,570	+		GFF3949	0.78	-0.6
3,988,570	+		GFF3949	0.78	-1.1
3,988,578	-		GFF3949	0.80	-0.9
3,988,578	-		GFF3949	0.80	-1.5
3,988,578	-		GFF3949	0.80	-1.3
3,988,578	-		GFF3949	0.80	-0.3
3,988,578	-		GFF3949	0.80	-1.0
3,988,578	-		GFF3949	0.80	-1.6
3,988,601	-		GFF3949	0.84	-1.6
3,988,627	+		GFF3949	0.88	-1.3
3,988,635	-		GFF3949	0.89	+0.5
3,988,635	-		GFF3949	0.89	-0.0
3,988,645	-				+0.7
3,988,703	-				-0.7
3,988,723	+				+1.5
3,988,775	+				-2.0
3,988,846	-				+0.5
3,988,851	-				-1.4
3,988,853	-				-0.3
3,988,858	-				+1.2
3,988,858	-				-0.1
3,988,858	-				-1.2
3,988,927	+				+1.0
3,988,927	+				+1.0
3,988,927	+				-0.3
3,988,935	-		GFF3950	0.10	-0.7
3,988,938	+		GFF3950	0.10	-1.7
3,988,938	+		GFF3950	0.10	-0.1
3,988,963	+		GFF3950	0.13	-0.3
3,988,991	+		GFF3950	0.15	-0.8
3,988,991	+		GFF3950	0.15	+0.3
3,989,039	+		GFF3950	0.19	-0.6
3,989,049	+		GFF3950	0.20	-0.3
3,989,049	+		GFF3950	0.20	+1.2
3,989,049	+		GFF3950	0.20	-0.1
3,989,049	+		GFF3950	0.20	+1.2
3,989,053	+		GFF3950	0.20	+0.6
3,989,054	+		GFF3950	0.20	-1.5
3,989,054	+		GFF3950	0.20	+0.4
3,989,057	-		GFF3950	0.20	+0.7
3,989,057	-		GFF3950	0.20	+0.2
3,989,057	-		GFF3950	0.20	+0.4
3,989,062	-		GFF3950	0.21	-0.3
3,989,062	-		GFF3950	0.21	+0.8
3,989,062	-		GFF3950	0.21	+0.4
3,989,086	+		GFF3950	0.23	-0.1
3,989,105	+		GFF3950	0.24	+0.8
3,989,113	-		GFF3950	0.25	+0.7
3,989,116	+		GFF3950	0.25	-0.8
3,989,116	+		GFF3950	0.25	+0.1
3,989,116	+		GFF3950	0.25	-0.8
3,989,117	+		GFF3950	0.25	+1.2
3,989,120	-		GFF3950	0.26	-0.5
3,989,120	-		GFF3950	0.26	-0.5
3,989,120	-		GFF3950	0.26	+0.4
3,989,124	-		GFF3950	0.26	+0.8
3,989,124	-		GFF3950	0.26	+1.5
3,989,124	-		GFF3950	0.26	+0.8
3,989,124	-		GFF3950	0.26	+0.8
3,989,125	-		GFF3950	0.26	-0.2
3,989,152	+		GFF3950	0.28	-0.5
3,989,164	+		GFF3950	0.29	+1.1
3,989,164	+		GFF3950	0.29	-2.2
3,989,165	-		GFF3950	0.29	+0.4
3,989,171	+		GFF3950	0.30	+0.7
3,989,176	+		GFF3950	0.30	+0.2
3,989,181	+		GFF3950	0.31	-0.2
3,989,186	+		GFF3950	0.31	+0.7
3,989,186	+		GFF3950	0.31	-3.0
3,989,186	+		GFF3950	0.31	-1.6
3,989,186	+		GFF3950	0.31	-0.2
3,989,189	-		GFF3950	0.31	-0.2
3,989,194	-		GFF3950	0.32	-0.8
3,989,194	-		GFF3950	0.32	+0.7
3,989,194	-		GFF3950	0.32	+1.0
3,989,197	+		GFF3950	0.32	+1.0
3,989,249	-		GFF3950	0.37	+0.6
3,989,254	-		GFF3950	0.37	+0.4
3,989,265	-		GFF3950	0.38	+0.1
3,989,270	+		GFF3950	0.38	+0.6
3,989,280	+		GFF3950	0.39	-0.5
3,989,283	-		GFF3950	0.39	-0.6
3,989,284	+		GFF3950	0.39	-1.1
3,989,289	+		GFF3950	0.40	+0.4
3,989,294	+		GFF3950	0.40	+1.6
3,989,343	+		GFF3950	0.44	+0.4
3,989,373	+		GFF3950	0.47	+0.3
3,989,377	+		GFF3950	0.47	+0.0
3,989,377	+		GFF3950	0.47	+0.0
3,989,377	+		GFF3950	0.47	+0.7
3,989,377	+		GFF3950	0.47	+0.5
3,989,377	+		GFF3950	0.47	+0.6
3,989,377	+		GFF3950	0.47	-1.9
3,989,377	+		GFF3950	0.47	+0.3
3,989,377	+		GFF3950	0.47	+0.1
3,989,377	+		GFF3950	0.47	-0.6
3,989,377	+		GFF3950	0.47	-1.2
3,989,377	+		GFF3950	0.47	+0.4
3,989,377	+		GFF3950	0.47	+0.7
3,989,377	+		GFF3950	0.47	-1.4
3,989,377	+		GFF3950	0.47	+1.3
3,989,377	+		GFF3950	0.47	-1.0
3,989,377	+		GFF3950	0.47	+0.4
3,989,377	+		GFF3950	0.47	+1.1
3,989,377	+		GFF3950	0.47	-1.3
3,989,377	+		GFF3950	0.47	-0.9
3,989,377	+		GFF3950	0.47	-1.5
3,989,377	+		GFF3950	0.47	-1.2
3,989,378	+		GFF3950	0.47	-0.7
3,989,381	-		GFF3950	0.48	+0.6
3,989,382	+		GFF3950	0.48	-0.8
3,989,385	-		GFF3950	0.48	-0.3
3,989,385	-		GFF3950	0.48	-0.9
3,989,385	-		GFF3950	0.48	-0.8
3,989,385	-		GFF3950	0.48	+0.3
3,989,385	-		GFF3950	0.48	-0.5
3,989,385	-		GFF3950	0.48	+0.3
3,989,385	-		GFF3950	0.48	-0.0
3,989,385	-		GFF3950	0.48	-0.6
3,989,385	-		GFF3950	0.48	-0.4
3,989,385	-		GFF3950	0.48	+0.4
3,989,385	-		GFF3950	0.48	-0.4
3,989,385	-		GFF3950	0.48	-0.8
3,989,385	-		GFF3950	0.48	+0.1
3,989,385	-		GFF3950	0.48	-0.6
3,989,385	-		GFF3950	0.48	+1.0
3,989,385	-		GFF3950	0.48	-1.2
3,989,386	-		GFF3950	0.48	+0.1
3,989,395	-		GFF3950	0.49	+0.3
3,989,399	+		GFF3950	0.49	-0.0
3,989,401	+		GFF3950	0.49	-0.8
3,989,414	-		GFF3950	0.50	-0.3
3,989,414	-		GFF3950	0.50	-1.0
3,989,414	-		GFF3950	0.50	-0.4
3,989,414	-		GFF3950	0.50	-0.4
3,989,419	-		GFF3950	0.51	-2.0
3,989,428	+		GFF3950	0.52	-0.2
3,989,433	+		GFF3950	0.52	-1.3
3,989,433	+		GFF3950	0.52	-0.9
3,989,441	-		GFF3950	0.53	-3.2
3,989,447	-		GFF3950	0.53	+0.3
3,989,464	+		GFF3950	0.55	+1.0
3,989,469	+		GFF3950	0.55	-0.8
3,989,492	+		GFF3950	0.57	-2.2
3,989,497	+		GFF3950	0.57	+0.8
3,989,500	-		GFF3950	0.58	-0.2
3,989,525	+		GFF3950	0.60	-0.8
3,989,555	-		GFF3950	0.62	+0.0
3,989,555	-		GFF3950	0.62	-0.1
3,989,555	-		GFF3950	0.62	-0.0
3,989,558	+		GFF3950	0.62	-0.3
3,989,566	-		GFF3950	0.63	+1.0
3,989,575	-		GFF3950	0.64	-0.4
3,989,577	+		GFF3950	0.64	-0.3
3,989,593	+		GFF3950	0.65	-1.2
3,989,610	+		GFF3950	0.67	-0.4
3,989,610	+		GFF3950	0.67	+0.4
3,989,627	+		GFF3950	0.68	+0.6
3,989,627	+		GFF3950	0.68	+0.3
3,989,627	+		GFF3950	0.68	+0.8
3,989,635	-		GFF3950	0.69	-0.2
3,989,667	-		GFF3950	0.72	-1.3
3,989,671	-		GFF3950	0.72	-0.9
3,989,683	+		GFF3950	0.73	-0.8
3,989,683	+		GFF3950	0.73	-0.6
3,989,683	+		GFF3950	0.73	-2.1
3,989,683	+		GFF3950	0.73	-0.2
3,989,683	+		GFF3950	0.73	-1.5
3,989,683	+		GFF3950	0.73	-0.4
3,989,691	-		GFF3950	0.74	-0.0
3,989,691	-		GFF3950	0.74	+0.4
3,989,691	-		GFF3950	0.74	+1.3
3,989,691	-		GFF3950	0.74	-1.3
3,989,693	+		GFF3950	0.74	-0.6