Strain Fitness in Sphingobium sp. HT1-2 around GFF3860

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,901,603	+		GFF3858	0.32	-0.9
3,901,606	-		GFF3858	0.33	-0.8
3,901,623	+		GFF3858	0.39	-2.0
3,901,623	+		GFF3858	0.39	-0.0
3,901,633	+		GFF3858	0.42	+1.0
3,901,638	+		GFF3858	0.44	-1.6
3,901,652	-		GFF3858	0.49	-2.5
3,901,655	-		GFF3858	0.50	+0.7
3,901,664	+		GFF3858	0.53	-1.5
3,901,693	-		GFF3858	0.62	-1.7
3,901,695	+		GFF3858	0.63	+0.8
3,901,703	+		GFF3858	0.66	-1.6
3,901,721	-		GFF3858	0.72	-2.0
3,901,769	+		GFF3858	0.88	+0.3
3,901,770	-		GFF3858	0.88	+1.1
3,901,837	+				-0.1
3,901,838	+				-1.3
3,901,846	-				+0.0
3,901,848	+				+0.8
3,901,848	+				-1.4
3,901,848	+				+0.4
3,901,863	-				-0.4
3,901,872	-		GFF3859	0.10	-0.7
3,901,877	-		GFF3859	0.11	-1.9
3,901,898	+		GFF3859	0.15	-1.1
3,901,906	-		GFF3859	0.16	-1.1
3,901,906	-		GFF3859	0.16	-0.9
3,901,906	-		GFF3859	0.16	-0.7
3,901,917	+		GFF3859	0.18	-1.1
3,901,928	+		GFF3859	0.20	-0.4
3,901,955	+		GFF3859	0.24	+0.3
3,901,975	-		GFF3859	0.28	-0.9
3,901,976	+		GFF3859	0.28	-0.1
3,901,981	+		GFF3859	0.29	-0.8
3,902,010	+		GFF3859	0.34	+0.7
3,902,010	-		GFF3859	0.34	-1.5
3,902,023	-		GFF3859	0.36	+0.8
3,902,039	+		GFF3859	0.39	+0.2
3,902,039	+		GFF3859	0.39	+1.3
3,902,042	-		GFF3859	0.39	-0.1
3,902,042	-		GFF3859	0.39	-0.1
3,902,063	+		GFF3859	0.43	+0.7
3,902,068	+		GFF3859	0.43	-0.6
3,902,068	+		GFF3859	0.43	+0.1
3,902,068	+		GFF3859	0.43	-0.7
3,902,068	+		GFF3859	0.43	-1.8
3,902,068	+		GFF3859	0.43	+0.5
3,902,068	+		GFF3859	0.43	+1.0
3,902,068	+		GFF3859	0.43	-0.6
3,902,073	+		GFF3859	0.44	+0.1
3,902,075	+		GFF3859	0.45	+1.0
3,902,075	+		GFF3859	0.45	-0.3
3,902,075	+		GFF3859	0.45	+0.0
3,902,075	+		GFF3859	0.45	-1.4
3,902,080	+		GFF3859	0.45	+1.5
3,902,081	-		GFF3859	0.46	-1.3
3,902,083	-		GFF3859	0.46	-0.9
3,902,083	-		GFF3859	0.46	-0.4
3,902,083	-		GFF3859	0.46	+0.4
3,902,116	-		GFF3859	0.52	-0.9
3,902,138	-		GFF3859	0.55	-0.3
3,902,140	-		GFF3859	0.56	-1.1
3,902,141	+		GFF3859	0.56	+0.9
3,902,147	+		GFF3859	0.57	+0.5
3,902,151	+		GFF3859	0.57	-0.1
3,902,175	+		GFF3859	0.61	+0.1
3,902,175	+		GFF3859	0.61	-1.8
3,902,183	-		GFF3859	0.63	+0.6
3,902,188	-		GFF3859	0.64	-0.6
3,902,188	-		GFF3859	0.64	+0.1
3,902,188	-		GFF3859	0.64	+1.9
3,902,194	-		GFF3859	0.65	-0.3
3,902,194	-		GFF3859	0.65	-1.2
3,902,196	+		GFF3859	0.65	-2.6
3,902,203	+		GFF3859	0.66	-0.2
3,902,211	+		GFF3859	0.68	-1.3
3,902,253	-		GFF3859	0.75	+0.2
3,902,298	+		GFF3859	0.82	-0.9
3,902,301	-		GFF3859	0.83	+0.9
3,902,301	-		GFF3859	0.83	+1.9
3,902,306	-		GFF3859	0.84	-1.5
3,902,312	+		GFF3859	0.85	+0.7
3,902,312	+		GFF3859	0.85	+0.7
3,902,312	+		GFF3859	0.85	-0.5
3,902,312	+		GFF3859	0.85	+0.3
3,902,312	+		GFF3859	0.85	-0.6
3,902,312	+		GFF3859	0.85	+1.2
3,902,312	+		GFF3859	0.85	+1.7
3,902,314	+		GFF3859	0.85	+2.0
3,902,314	+		GFF3859	0.85	+0.3
3,902,314	+		GFF3859	0.85	-1.5
3,902,320	-		GFF3859	0.86	-1.1
3,902,320	-		GFF3859	0.86	+2.0
3,902,320	-		GFF3859	0.86	+1.3
3,902,322	-		GFF3859	0.86	-0.4
3,902,322	-		GFF3859	0.86	-2.8
3,902,342	-		GFF3859	0.90	-0.8
3,902,358	-				+0.8
3,902,391	+				-1.0
3,902,399	-				-1.7
3,902,401	-				-0.1
3,902,405	+				-1.3
3,902,406	-				-1.5
3,902,412	+				+0.2
3,902,412	+				+0.1
3,902,424	+				-0.7
3,902,430	+				-0.4
3,902,438	+				-1.1
3,902,443	+				-1.4
3,902,488	-				-1.4
3,902,488	-				-1.8
3,902,488	-				+0.5
3,902,499	+				+1.1
3,902,499	+				+0.3
3,902,501	+				-0.6
3,902,503	+				-0.1
3,902,505	-				+0.6
3,902,507	+				+0.2
3,902,521	+				-0.6
3,902,522	+				+0.6
3,902,530	-				+0.1
3,902,565	+				+0.5
3,902,579	+				+0.3
3,902,584	+				+0.3
3,902,585	+				-1.4
3,902,587	-				-1.0
3,902,591	+				-0.9
3,902,591	+				+1.5
3,902,591	+				-1.1
3,902,591	+				-1.5
3,902,591	+				-1.2
3,902,591	+				-0.3
3,902,594	-				-0.7
3,902,599	-				+0.4
3,902,599	-				-0.2
3,902,599	-				-1.3
3,902,599	-				+0.0
3,902,600	-		GFF3860	0.10	+0.2
3,902,617	+		GFF3860	0.13	-0.8
3,902,617	+		GFF3860	0.13	-1.1
3,902,625	-		GFF3860	0.15	+0.3
3,902,681	+		GFF3860	0.25	-0.6
3,902,681	+		GFF3860	0.25	-0.8
3,902,681	+		GFF3860	0.25	+0.9
3,902,681	+		GFF3860	0.25	+0.6
3,902,681	+		GFF3860	0.25	+0.8
3,902,681	+		GFF3860	0.25	+1.0
3,902,681	+		GFF3860	0.25	-0.5
3,902,684	-		GFF3860	0.26	-0.7
3,902,689	-		GFF3860	0.27	-2.9
3,902,689	-		GFF3860	0.27	-0.5
3,902,689	-		GFF3860	0.27	+0.9
3,902,689	-		GFF3860	0.27	-0.0
3,902,689	-		GFF3860	0.27	+0.1
3,902,689	-		GFF3860	0.27	-0.4
3,902,689	-		GFF3860	0.27	-0.9
3,902,689	-		GFF3860	0.27	+0.1
3,902,689	-		GFF3860	0.27	+0.0
3,902,689	-		GFF3860	0.27	-0.2
3,902,694	-		GFF3860	0.28	-0.9
3,902,707	-		GFF3860	0.30	+0.2
3,902,707	-		GFF3860	0.30	-1.9
3,902,707	-		GFF3860	0.30	+0.2
3,902,709	-		GFF3860	0.31	-0.4
3,902,712	+		GFF3860	0.31	+1.0
3,902,712	+		GFF3860	0.31	-0.6
3,902,712	+		GFF3860	0.31	-0.0
3,902,712	+		GFF3860	0.31	-0.5
3,902,717	+		GFF3860	0.32	-1.1
3,902,738	+		GFF3860	0.36	-2.4
3,902,760	+		GFF3860	0.40	+0.8
3,902,763	-		GFF3860	0.41	-0.5
3,902,765	+		GFF3860	0.41	-1.1
3,902,765	+		GFF3860	0.41	+0.6
3,902,765	+		GFF3860	0.41	-0.9
3,902,770	+		GFF3860	0.42	-1.1
3,902,773	-		GFF3860	0.43	-0.6
3,902,773	-		GFF3860	0.43	-0.4
3,902,773	-		GFF3860	0.43	-2.3
3,902,773	-		GFF3860	0.43	-0.5
3,902,773	-		GFF3860	0.43	-1.2
3,902,773	-		GFF3860	0.43	-1.1
3,902,791	+		GFF3860	0.46	-1.5
3,902,797	-		GFF3860	0.47	-0.7
3,902,803	-		GFF3860	0.48	-0.6
3,902,811	+		GFF3860	0.50	+0.5
3,902,814	+		GFF3860	0.50	+1.0
3,902,814	+		GFF3860	0.50	+0.2
3,902,814	+		GFF3860	0.50	-0.9
3,902,814	+		GFF3860	0.50	+0.3
3,902,822	-		GFF3860	0.52	-1.5
3,902,822	-		GFF3860	0.52	-0.7
3,902,824	+		GFF3860	0.52	+0.5
3,902,824	+		GFF3860	0.52	-2.1
3,902,832	-		GFF3860	0.54	-1.4
3,902,832	-		GFF3860	0.54	-1.9
3,902,832	-		GFF3860	0.54	-0.4
3,902,832	-		GFF3860	0.54	-0.3
3,902,832	-		GFF3860	0.54	-0.2
3,902,832	-		GFF3860	0.54	+1.1
3,902,839	+		GFF3860	0.55	-2.5
3,902,862	+		GFF3860	0.59	-1.6
3,902,862	+		GFF3860	0.59	-0.2
3,902,870	-		GFF3860	0.61	-0.5
3,902,870	-		GFF3860	0.61	+0.9
3,902,870	-		GFF3860	0.61	-0.1
3,902,870	-		GFF3860	0.61	-2.3
3,902,870	-		GFF3860	0.61	-0.3
3,902,880	-		GFF3860	0.63	+0.7
3,902,889	+		GFF3860	0.64	+0.5
3,902,892	-		GFF3860	0.65	+0.7
3,902,894	+		GFF3860	0.65	-0.1
3,902,899	+		GFF3860	0.66	-0.8
3,902,907	-		GFF3860	0.68	-0.0
3,902,921	+		GFF3860	0.70	-1.6
3,902,930	-		GFF3860	0.72	-1.4
3,902,933	-		GFF3860	0.72	-1.7
3,902,933	-		GFF3860	0.72	+0.2
3,902,934	-		GFF3860	0.73	-1.1
3,902,950	-		GFF3860	0.76	+0.6
3,902,950	-		GFF3860	0.76	-2.1
3,902,960	-		GFF3860	0.78	-0.1
3,902,963	+		GFF3860	0.78	-1.9
3,902,963	+		GFF3860	0.78	+0.9
3,902,968	+		GFF3860	0.79	+0.3
3,902,971	+		GFF3860	0.80	-2.1
3,902,971	+		GFF3860	0.80	+0.3
3,902,979	-		GFF3860	0.81	+0.3
3,902,984	-		GFF3860	0.82	-1.3
3,902,984	-		GFF3860	0.82	+0.0
3,902,986	+		GFF3860	0.82	-1.0
3,902,986	-		GFF3860	0.82	-1.4
3,902,994	-		GFF3860	0.84	+0.0
3,903,004	-		GFF3860	0.86	-0.1
3,903,012	-		GFF3860	0.87	-0.5
3,903,013	+		GFF3860	0.87	-0.3
3,903,023	+		GFF3860	0.89	+0.9
3,903,040	+				-1.6
3,903,051	+				-1.8
3,903,057	-				-0.5
3,903,057	-				+0.6
3,903,059	-				-0.8
3,903,076	-				-0.7
3,903,080	+				-2.3
3,903,095	+				+0.7
3,903,098	-				-2.1
3,903,107	+				-1.4
3,903,122	+				-0.9
3,903,154	+				-0.3
3,903,155	-				-1.8
3,903,155	-				+0.9
3,903,155	-				+0.7
3,903,156	-				-0.5
3,903,177	+				-0.9
3,903,290	+				+0.3
3,903,295	+				-1.4
3,903,328	+				-0.5
3,903,336	+				-1.3
3,903,373	-				-2.4
3,903,378	-				-0.2
3,903,388	+				-0.3
3,903,388	+				-1.3
3,903,398	+				-1.6
3,903,402	+				-0.5
3,903,406	-				-2.0
3,903,431	+				+0.1
3,903,431	-				+0.2
3,903,445	-				+0.4
3,903,445	-				-1.1
3,903,445	-				-0.3
3,903,458	+				-0.5
3,903,465	-				+0.4
3,903,466	-				-0.8
3,903,469	+				-1.2
3,903,474	+				-2.6
3,903,477	-				-2.3
3,903,477	-				+0.1
3,903,510	+				-1.4