Strain Fitness in Sphingobium sp. HT1-2 around GFF3800

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,840,699	-		GFF3799	0.34	-0.2
3,840,706	+		GFF3799	0.34	-0.2
3,840,721	+		GFF3799	0.35	-0.8
3,840,721	+		GFF3799	0.35	+1.3
3,840,721	+		GFF3799	0.35	-0.6
3,840,721	+		GFF3799	0.35	+0.0
3,840,721	+		GFF3799	0.35	-2.5
3,840,721	+		GFF3799	0.35	-0.8
3,840,721	+		GFF3799	0.35	-1.5
3,840,729	-		GFF3799	0.36	-0.0
3,840,729	-		GFF3799	0.36	-0.3
3,840,729	-		GFF3799	0.36	+0.1
3,840,734	-		GFF3799	0.36	-0.2
3,840,749	+		GFF3799	0.37	-0.2
3,840,757	-		GFF3799	0.38	-0.1
3,840,765	+		GFF3799	0.38	+0.5
3,840,807	+		GFF3799	0.41	+0.2
3,840,818	+		GFF3799	0.42	-0.7
3,840,818	+		GFF3799	0.42	+0.5
3,840,826	-		GFF3799	0.42	-1.3
3,840,826	-		GFF3799	0.42	-0.7
3,840,826	-		GFF3799	0.42	-0.2
3,840,887	-		GFF3799	0.46	-0.4
3,840,902	-		GFF3799	0.47	-1.4
3,840,948	+		GFF3799	0.50	-0.5
3,840,966	+		GFF3799	0.51	+1.2
3,840,974	-		GFF3799	0.52	-0.7
3,840,974	-		GFF3799	0.52	-2.5
3,840,993	+		GFF3799	0.53	-1.8
3,841,036	-		GFF3799	0.56	+0.2
3,841,103	-		GFF3799	0.60	+0.5
3,841,103	-		GFF3799	0.60	-2.7
3,841,122	+		GFF3799	0.62	+0.4
3,841,122	+		GFF3799	0.62	+0.9
3,841,122	+		GFF3799	0.62	+0.3
3,841,122	+		GFF3799	0.62	-1.1
3,841,122	+		GFF3799	0.62	-0.4
3,841,122	+		GFF3799	0.62	+1.4
3,841,130	-		GFF3799	0.62	+0.8
3,841,130	-		GFF3799	0.62	-0.7
3,841,130	-		GFF3799	0.62	-2.3
3,841,130	-		GFF3799	0.62	-1.6
3,841,130	-		GFF3799	0.62	-0.1
3,841,130	-		GFF3799	0.62	-0.7
3,841,130	-		GFF3799	0.62	-1.1
3,841,130	-		GFF3799	0.62	-1.3
3,841,130	-		GFF3799	0.62	+1.1
3,841,130	-		GFF3799	0.62	+1.1
3,841,149	-		GFF3799	0.63	+0.5
3,841,196	+		GFF3799	0.67	+0.2
3,841,199	-		GFF3799	0.67	-0.1
3,841,204	+		GFF3799	0.67	-0.2
3,841,222	+		GFF3799	0.68	+0.4
3,841,241	+		GFF3799	0.70	+0.7
3,841,259	-		GFF3799	0.71	+1.3
3,841,275	+		GFF3799	0.72	-1.3
3,841,281	-		GFF3799	0.72	+0.7
3,841,338	+		GFF3799	0.76	-1.4
3,841,338	+		GFF3799	0.76	-1.2
3,841,346	-		GFF3799	0.77	-1.7
3,841,346	-		GFF3799	0.77	-1.6
3,841,346	-		GFF3799	0.77	-0.2
3,841,346	-		GFF3799	0.77	-1.6
3,841,348	-		GFF3799	0.77	+0.2
3,841,357	+		GFF3799	0.77	+1.5
3,841,357	+		GFF3799	0.77	+0.3
3,841,393	+		GFF3799	0.80	+0.1
3,841,401	-		GFF3799	0.80	+0.7
3,841,403	-		GFF3799	0.80	-0.9
3,841,410	+		GFF3799	0.81	-0.4
3,841,414	-		GFF3799	0.81	-0.5
3,841,442	+		GFF3799	0.83	-1.2
3,841,466	-		GFF3799	0.84	+0.9
3,841,472	-		GFF3799	0.85	-0.2
3,841,482	-		GFF3799	0.85	-1.7
3,841,482	-		GFF3799	0.85	-0.3
3,841,510	-		GFF3799	0.87	-0.5
3,841,516	+		GFF3799	0.88	-1.3
3,841,526	-		GFF3799	0.88	+0.2
3,841,540	+		GFF3799	0.89	-0.1
3,841,541	+		GFF3799	0.89	+0.3
3,841,549	+		GFF3799	0.90	-0.7
3,841,549	-		GFF3799	0.90	+0.5
3,841,567	-				-1.5
3,841,572	-				-0.1
3,841,582	+				-1.9
3,841,589	-				-0.1
3,841,589	-				+1.1
3,841,625	+				-0.5
3,841,625	+				+0.2
3,841,630	+				+0.6
3,841,633	-				+1.3
3,841,638	-				+0.4
3,841,677	+				-0.8
3,841,685	-				-1.2
3,841,719	+				+0.2
3,841,738	+				-0.7
3,841,746	-				-0.7
3,841,746	-				-0.6
3,841,746	-				-1.4
3,841,760	+				+0.7
3,841,761	+				-0.1
3,841,774	+				-0.1
3,841,782	-				-1.9
3,841,809	-		GFF3800	0.10	-0.2
3,841,819	-		GFF3800	0.11	+0.4
3,841,823	-		GFF3800	0.11	+1.7
3,841,830	+		GFF3800	0.12	-0.9
3,841,838	+		GFF3800	0.13	+0.0
3,841,838	-		GFF3800	0.13	+0.2
3,841,840	+		GFF3800	0.13	+0.1
3,841,840	+		GFF3800	0.13	+1.4
3,841,848	-		GFF3800	0.14	-1.3
3,841,848	-		GFF3800	0.14	+1.1
3,841,858	-		GFF3800	0.14	+0.1
3,841,874	-		GFF3800	0.16	-0.7
3,841,882	+		GFF3800	0.17	+0.4
3,841,882	+		GFF3800	0.17	+0.6
3,841,882	+		GFF3800	0.17	-0.4
3,841,882	+		GFF3800	0.17	-0.4
3,841,897	+		GFF3800	0.18	+2.3
3,841,922	-		GFF3800	0.20	+0.1
3,841,922	-		GFF3800	0.20	+0.2
3,841,938	-		GFF3800	0.21	+1.1
3,841,945	+		GFF3800	0.22	-0.2
3,841,953	-		GFF3800	0.23	-1.5
3,841,965	+		GFF3800	0.24	-1.6
3,841,969	+		GFF3800	0.24	-0.2
3,841,982	-		GFF3800	0.25	-0.1
3,841,996	+		GFF3800	0.27	-0.7
3,842,002	+		GFF3800	0.27	+1.1
3,842,002	+		GFF3800	0.27	-0.6
3,842,002	+		GFF3800	0.27	-0.5
3,842,002	+		GFF3800	0.27	-1.4
3,842,004	-		GFF3800	0.27	+1.4
3,842,007	+		GFF3800	0.28	-1.5
3,842,007	+		GFF3800	0.28	-2.6
3,842,010	-		GFF3800	0.28	-0.3
3,842,010	-		GFF3800	0.28	-0.8
3,842,015	-		GFF3800	0.28	-0.3
3,842,039	+		GFF3800	0.30	-1.3
3,842,039	+		GFF3800	0.30	+0.6
3,842,047	-		GFF3800	0.31	+0.5
3,842,090	+		GFF3800	0.35	+0.5
3,842,102	+		GFF3800	0.36	+1.2
3,842,102	+		GFF3800	0.36	-0.7
3,842,102	+		GFF3800	0.36	+0.7
3,842,102	+		GFF3800	0.36	+0.4
3,842,102	+		GFF3800	0.36	-0.1
3,842,102	+		GFF3800	0.36	+0.2
3,842,102	+		GFF3800	0.36	+1.1
3,842,107	+		GFF3800	0.36	+0.8
3,842,110	-		GFF3800	0.37	+0.5
3,842,110	-		GFF3800	0.37	-0.7
3,842,110	-		GFF3800	0.37	+0.0
3,842,110	-		GFF3800	0.37	+0.8
3,842,127	-		GFF3800	0.38	+0.4
3,842,127	-		GFF3800	0.38	-1.1
3,842,127	-		GFF3800	0.38	-0.8
3,842,149	+		GFF3800	0.40	+0.3
3,842,157	-		GFF3800	0.41	+0.3
3,842,159	+		GFF3800	0.41	+0.8
3,842,159	+		GFF3800	0.41	-0.6
3,842,167	-		GFF3800	0.42	+1.2
3,842,185	+		GFF3800	0.43	-2.9
3,842,224	+		GFF3800	0.47	-1.9
3,842,252	+		GFF3800	0.49	-0.0
3,842,258	+		GFF3800	0.50	-1.6
3,842,258	+		GFF3800	0.50	+1.5
3,842,261	-		GFF3800	0.50	-1.3
3,842,263	+		GFF3800	0.50	-1.2
3,842,263	+		GFF3800	0.50	+0.5
3,842,266	-		GFF3800	0.50	-0.6
3,842,273	+		GFF3800	0.51	-0.6
3,842,276	+		GFF3800	0.51	-0.2
3,842,276	+		GFF3800	0.51	-0.3
3,842,301	-		GFF3800	0.53	-0.2
3,842,392	+		GFF3800	0.61	-0.1
3,842,409	-		GFF3800	0.63	-0.1
3,842,453	+		GFF3800	0.67	-0.3
3,842,455	+		GFF3800	0.67	-1.2
3,842,455	+		GFF3800	0.67	+0.3
3,842,468	+		GFF3800	0.68	-0.0
3,842,468	+		GFF3800	0.68	+0.5
3,842,468	+		GFF3800	0.68	-1.3
3,842,476	-		GFF3800	0.69	+0.4
3,842,476	-		GFF3800	0.69	+1.6
3,842,477	+		GFF3800	0.69	+0.6
3,842,489	+		GFF3800	0.70	-0.8
3,842,489	+		GFF3800	0.70	+0.8
3,842,492	-		GFF3800	0.70	+0.4
3,842,494	+		GFF3800	0.70	-0.1
3,842,502	-		GFF3800	0.71	-2.1
3,842,506	+		GFF3800	0.71	-0.8
3,842,522	+		GFF3800	0.73	-0.2
3,842,530	+		GFF3800	0.74	-1.4
3,842,530	+		GFF3800	0.74	-1.2
3,842,530	+		GFF3800	0.74	-0.6
3,842,530	+		GFF3800	0.74	-0.4
3,842,530	+		GFF3800	0.74	-2.1
3,842,530	+		GFF3800	0.74	-1.9
3,842,530	+		GFF3800	0.74	+1.4
3,842,531	-		GFF3800	0.74	-1.8
3,842,538	-		GFF3800	0.74	+1.1
3,842,571	+		GFF3800	0.77	-1.6
3,842,571	+		GFF3800	0.77	-0.3
3,842,579	-		GFF3800	0.78	+0.6
3,842,579	-		GFF3800	0.78	+1.0
3,842,579	-		GFF3800	0.78	+1.7
3,842,592	+		GFF3800	0.79	-0.2
3,842,600	-		GFF3800	0.80	-0.3
3,842,631	+		GFF3800	0.82	-0.6
3,842,642	+		GFF3800	0.83	-0.5
3,842,642	+		GFF3800	0.83	-0.2
3,842,642	+		GFF3800	0.83	+0.3
3,842,642	+		GFF3800	0.83	-1.3
3,842,650	-		GFF3800	0.84	-0.1
3,842,650	-		GFF3800	0.84	-1.4
3,842,650	-		GFF3800	0.84	+0.4
3,842,650	-		GFF3800	0.84	-0.7
3,842,650	-		GFF3800	0.84	+0.5
3,842,712	+		GFF3800	0.90	-1.7
3,842,718	+				+0.6
3,842,721	-				-0.6
3,842,722	+				-2.3
3,842,723	+				-1.0
3,842,723	+				-0.6
3,842,754	+				-1.2
3,842,782	+				-0.9
3,842,789	+				-0.6
3,842,789	+				+0.1
3,842,797	-				-1.4
3,842,797	-				-2.1
3,842,825	+				+0.7
3,842,827	+				-1.9
3,842,835	-				-0.6
3,842,835	-				-1.7
3,842,841	-				-0.7
3,842,858	-				-2.1
3,842,859	+				-0.8
3,842,867	-				-0.3
3,842,883	+				-0.7
3,842,883	+				+0.1
3,842,891	-				-0.5
3,842,910	-				-1.5
3,842,914	+				-0.8
3,842,920	+				-0.1
3,842,928	-				-1.6
3,842,939	-				+1.4
3,842,939	-				+0.3
3,842,943	-				+0.1
3,843,053	+		GFF3801	0.14	+0.9
3,843,068	+		GFF3801	0.15	+0.2
3,843,083	-		GFF3801	0.16	-1.1
3,843,086	+		GFF3801	0.16	-0.4
3,843,086	+		GFF3801	0.16	-0.3
3,843,086	+		GFF3801	0.16	-1.3
3,843,092	+		GFF3801	0.16	+0.5
3,843,094	-		GFF3801	0.16	+0.3
3,843,094	-		GFF3801	0.16	+0.2
3,843,094	-		GFF3801	0.16	-0.8
3,843,141	-		GFF3801	0.20	-0.4
3,843,143	+		GFF3801	0.20	-1.1
3,843,143	-		GFF3801	0.20	-1.5
3,843,157	+		GFF3801	0.21	-1.8
3,843,157	+		GFF3801	0.21	-0.9
3,843,157	+		GFF3801	0.21	-1.2
3,843,157	+		GFF3801	0.21	-1.6
3,843,157	+		GFF3801	0.21	-1.2
3,843,157	+		GFF3801	0.21	+0.5
3,843,157	+		GFF3801	0.21	-0.4
3,843,165	-		GFF3801	0.21	+0.9
3,843,165	-		GFF3801	0.21	-1.4
3,843,182	+		GFF3801	0.22	-0.5
3,843,187	+		GFF3801	0.23	-1.3
3,843,190	-		GFF3801	0.23	-1.6
3,843,195	-		GFF3801	0.23	-0.4
3,843,225	+		GFF3801	0.25	+0.7
3,843,225	+		GFF3801	0.25	+1.3
3,843,227	+		GFF3801	0.25	+1.5
3,843,227	-		GFF3801	0.25	-1.3
3,843,233	-		GFF3801	0.26	-0.2
3,843,249	-		GFF3801	0.27	-2.2
3,843,275	-		GFF3801	0.28	+0.4
3,843,311	+		GFF3801	0.31	-1.9
3,843,376	+		GFF3801	0.35	-1.2
3,843,391	+		GFF3801	0.36	+0.2
3,843,404	+		GFF3801	0.37	-1.3
3,843,415	+		GFF3801	0.37	-2.8
3,843,424	+		GFF3801	0.38	+1.4
3,843,430	+		GFF3801	0.38	+0.8
3,843,432	+		GFF3801	0.39	-0.6
3,843,433	-		GFF3801	0.39	+0.4
3,843,438	-		GFF3801	0.39	-0.0
3,843,495	+		GFF3801	0.43	+1.2
3,843,495	+		GFF3801	0.43	-0.2
3,843,497	+		GFF3801	0.43	-0.4
3,843,500	-		GFF3801	0.43	+0.3
3,843,535	-		GFF3801	0.45	+1.6
3,843,552	+		GFF3801	0.46	+0.7
3,843,571	+		GFF3801	0.48	+1.9
3,843,590	-		GFF3801	0.49	-0.8
3,843,598	-		GFF3801	0.49	-1.4
3,843,600	+		GFF3801	0.50	-0.9
3,843,608	-		GFF3801	0.50	-2.4
3,843,619	+		GFF3801	0.51	+1.2
3,843,682	+		GFF3801	0.55	+1.1
3,843,690	-		GFF3801	0.55	+1.3
3,843,719	-		GFF3801	0.57	-1.9
3,843,748	+		GFF3801	0.59	+0.2
3,843,748	+		GFF3801	0.59	-1.8
3,843,748	+		GFF3801	0.59	-1.9
3,843,750	+		GFF3801	0.59	-0.4
3,843,756	-		GFF3801	0.60	-2.3
3,843,756	-		GFF3801	0.60	-0.9
3,843,756	-		GFF3801	0.60	-1.8
3,843,756	-		GFF3801	0.60	+0.5
3,843,756	-		GFF3801	0.60	-0.1
3,843,756	-		GFF3801	0.60	-0.7
3,843,772	-		GFF3801	0.61	-1.4
3,843,802	+		GFF3801	0.63	+1.2
3,843,817	+		GFF3801	0.64	-1.9