Strain Fitness in Sphingobium sp. HT1-2 around GFF3799

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,839,192	+		GFF3797	0.68	-1.9
3,839,198	+		GFF3797	0.69	+0.2
3,839,199	+		GFF3797	0.69	-0.3
3,839,199	+		GFF3797	0.69	+0.3
3,839,236	-		GFF3797	0.75	-1.5
3,839,239	+		GFF3797	0.76	+0.5
3,839,242	-		GFF3797	0.76	-1.5
3,839,262	+		GFF3797	0.79	-1.2
3,839,270	-		GFF3797	0.81	-0.6
3,839,281	+		GFF3797	0.82	-0.3
3,839,303	-		GFF3797	0.86	-1.7
3,839,353	-				+0.6
3,839,360	+				+1.3
3,839,363	-				-1.1
3,839,367	+				+0.8
3,839,368	-				-0.4
3,839,416	+				+0.6
3,839,416	+				-1.2
3,839,417	+				-1.6
3,839,424	-				-0.3
3,839,424	-				-1.7
3,839,471	-				+1.2
3,839,486	-				-1.3
3,839,490	-				-1.2
3,839,564	-		GFF3798	0.19	+0.4
3,839,564	-		GFF3798	0.19	-0.5
3,839,566	+		GFF3798	0.19	+0.4
3,839,584	+		GFF3798	0.22	-0.4
3,839,600	+		GFF3798	0.24	-1.3
3,839,681	-		GFF3798	0.36	+1.2
3,839,733	-		GFF3798	0.44	-0.2
3,839,770	-		GFF3798	0.50	-1.3
3,839,790	+		GFF3798	0.53	+0.7
3,839,790	+		GFF3798	0.53	-1.5
3,839,791	+		GFF3798	0.53	-0.5
3,839,798	-		GFF3798	0.54	+0.9
3,839,801	+		GFF3798	0.55	+0.4
3,839,803	+		GFF3798	0.55	+0.2
3,839,813	+		GFF3798	0.57	+0.9
3,839,813	+		GFF3798	0.57	-1.0
3,839,813	+		GFF3798	0.57	-1.5
3,839,813	+		GFF3798	0.57	-2.3
3,839,821	-		GFF3798	0.58	-1.5
3,839,821	-		GFF3798	0.58	-0.2
3,839,821	-		GFF3798	0.58	-0.4
3,839,821	-		GFF3798	0.58	-1.3
3,839,821	-		GFF3798	0.58	-1.5
3,839,821	-		GFF3798	0.58	+1.5
3,839,821	-		GFF3798	0.58	-1.5
3,839,821	-		GFF3798	0.58	+1.2
3,839,821	-		GFF3798	0.58	+0.8
3,839,843	-		GFF3798	0.61	+0.2
3,839,937	+		GFF3798	0.76	+1.4
3,839,937	+		GFF3798	0.76	-0.4
3,839,945	-		GFF3798	0.77	-0.1
3,840,065	-				-0.3
3,840,101	+				+0.1
3,840,106	+				+0.9
3,840,128	+				+0.3
3,840,134	+				+0.2
3,840,134	+				+0.6
3,840,134	+				-0.9
3,840,134	+				-0.4
3,840,134	+				-0.5
3,840,134	+				-0.2
3,840,169	+				-0.5
3,840,177	-				+1.6
3,840,178	+				+0.3
3,840,179	+				-0.1
3,840,189	+				-0.6
3,840,218	+				-0.3
3,840,227	+				+0.3
3,840,235	-				-1.2
3,840,241	+				+1.5
3,840,241	+				+1.3
3,840,246	+				-0.9
3,840,254	-				-0.0
3,840,263	-				-1.0
3,840,265	-				+0.9
3,840,319	+				-1.8
3,840,329	+				-0.2
3,840,388	+		GFF3799	0.13	+1.0
3,840,405	+		GFF3799	0.14	+0.1
3,840,410	+		GFF3799	0.15	+0.9
3,840,418	-		GFF3799	0.15	+0.4
3,840,418	-		GFF3799	0.15	-0.2
3,840,504	+		GFF3799	0.21	-0.2
3,840,504	+		GFF3799	0.21	+0.1
3,840,509	+		GFF3799	0.21	-1.5
3,840,509	-		GFF3799	0.21	+1.5
3,840,512	-		GFF3799	0.21	-0.2
3,840,512	-		GFF3799	0.21	+0.7
3,840,548	+		GFF3799	0.24	-0.9
3,840,580	+		GFF3799	0.26	-0.4
3,840,585	+		GFF3799	0.26	-0.2
3,840,608	-		GFF3799	0.28	-1.5
3,840,614	-		GFF3799	0.28	-0.7
3,840,623	-		GFF3799	0.29	-0.1
3,840,651	-		GFF3799	0.31	+0.8
3,840,651	-		GFF3799	0.31	-0.2
3,840,674	+		GFF3799	0.32	+0.9
3,840,675	+		GFF3799	0.32	-2.6
3,840,677	-		GFF3799	0.32	-1.1
3,840,682	-		GFF3799	0.33	+0.3
3,840,682	-		GFF3799	0.33	+0.5
3,840,699	-		GFF3799	0.34	-0.2
3,840,706	+		GFF3799	0.34	-0.2
3,840,721	+		GFF3799	0.35	-0.8
3,840,721	+		GFF3799	0.35	+1.3
3,840,721	+		GFF3799	0.35	-0.6
3,840,721	+		GFF3799	0.35	+0.0
3,840,721	+		GFF3799	0.35	-2.5
3,840,721	+		GFF3799	0.35	-0.8
3,840,721	+		GFF3799	0.35	-1.5
3,840,729	-		GFF3799	0.36	-0.0
3,840,729	-		GFF3799	0.36	-0.3
3,840,729	-		GFF3799	0.36	+0.1
3,840,734	-		GFF3799	0.36	-0.2
3,840,749	+		GFF3799	0.37	-0.2
3,840,757	-		GFF3799	0.38	-0.1
3,840,765	+		GFF3799	0.38	+0.5
3,840,807	+		GFF3799	0.41	+0.2
3,840,818	+		GFF3799	0.42	-0.7
3,840,818	+		GFF3799	0.42	+0.5
3,840,826	-		GFF3799	0.42	-1.3
3,840,826	-		GFF3799	0.42	-0.7
3,840,826	-		GFF3799	0.42	-0.2
3,840,887	-		GFF3799	0.46	-0.4
3,840,902	-		GFF3799	0.47	-1.4
3,840,948	+		GFF3799	0.50	-0.5
3,840,966	+		GFF3799	0.51	+1.2
3,840,974	-		GFF3799	0.52	-0.7
3,840,974	-		GFF3799	0.52	-2.5
3,840,993	+		GFF3799	0.53	-1.8
3,841,036	-		GFF3799	0.56	+0.2
3,841,103	-		GFF3799	0.60	+0.5
3,841,103	-		GFF3799	0.60	-2.7
3,841,122	+		GFF3799	0.62	+0.4
3,841,122	+		GFF3799	0.62	+0.9
3,841,122	+		GFF3799	0.62	+0.3
3,841,122	+		GFF3799	0.62	-1.1
3,841,122	+		GFF3799	0.62	-0.4
3,841,122	+		GFF3799	0.62	+1.4
3,841,130	-		GFF3799	0.62	+0.8
3,841,130	-		GFF3799	0.62	-0.7
3,841,130	-		GFF3799	0.62	-2.3
3,841,130	-		GFF3799	0.62	-1.6
3,841,130	-		GFF3799	0.62	-0.1
3,841,130	-		GFF3799	0.62	-0.7
3,841,130	-		GFF3799	0.62	-1.1
3,841,130	-		GFF3799	0.62	-1.3
3,841,130	-		GFF3799	0.62	+1.1
3,841,130	-		GFF3799	0.62	+1.1
3,841,149	-		GFF3799	0.63	+0.5
3,841,196	+		GFF3799	0.67	+0.2
3,841,199	-		GFF3799	0.67	-0.1
3,841,204	+		GFF3799	0.67	-0.2
3,841,222	+		GFF3799	0.68	+0.4
3,841,241	+		GFF3799	0.70	+0.7
3,841,259	-		GFF3799	0.71	+1.3
3,841,275	+		GFF3799	0.72	-1.3
3,841,281	-		GFF3799	0.72	+0.7
3,841,338	+		GFF3799	0.76	-1.4
3,841,338	+		GFF3799	0.76	-1.2
3,841,346	-		GFF3799	0.77	-1.7
3,841,346	-		GFF3799	0.77	-1.6
3,841,346	-		GFF3799	0.77	-0.2
3,841,346	-		GFF3799	0.77	-1.6
3,841,348	-		GFF3799	0.77	+0.2
3,841,357	+		GFF3799	0.77	+1.5
3,841,357	+		GFF3799	0.77	+0.3
3,841,393	+		GFF3799	0.80	+0.1
3,841,401	-		GFF3799	0.80	+0.7
3,841,403	-		GFF3799	0.80	-0.9
3,841,410	+		GFF3799	0.81	-0.4
3,841,414	-		GFF3799	0.81	-0.5
3,841,442	+		GFF3799	0.83	-1.2
3,841,466	-		GFF3799	0.84	+0.9
3,841,472	-		GFF3799	0.85	-0.2
3,841,482	-		GFF3799	0.85	-1.7
3,841,482	-		GFF3799	0.85	-0.3
3,841,510	-		GFF3799	0.87	-0.5
3,841,516	+		GFF3799	0.88	-1.3
3,841,526	-		GFF3799	0.88	+0.2
3,841,540	+		GFF3799	0.89	-0.1
3,841,541	+		GFF3799	0.89	+0.3
3,841,549	+		GFF3799	0.90	-0.7
3,841,549	-		GFF3799	0.90	+0.5
3,841,567	-				-1.5
3,841,572	-				-0.1
3,841,582	+				-1.9
3,841,589	-				-0.1
3,841,589	-				+1.1
3,841,625	+				-0.5
3,841,625	+				+0.2
3,841,630	+				+0.6
3,841,633	-				+1.3
3,841,638	-				+0.4
3,841,677	+				-0.8
3,841,685	-				-1.2
3,841,719	+				+0.2
3,841,738	+				-0.7
3,841,746	-				-0.7
3,841,746	-				-0.6
3,841,746	-				-1.4
3,841,760	+				+0.7
3,841,761	+				-0.1
3,841,774	+				-0.1
3,841,782	-				-1.9
3,841,809	-		GFF3800	0.10	-0.2
3,841,819	-		GFF3800	0.11	+0.4
3,841,823	-		GFF3800	0.11	+1.7
3,841,830	+		GFF3800	0.12	-0.9
3,841,838	+		GFF3800	0.13	+0.0
3,841,838	-		GFF3800	0.13	+0.2
3,841,840	+		GFF3800	0.13	+0.1
3,841,840	+		GFF3800	0.13	+1.4
3,841,848	-		GFF3800	0.14	-1.3
3,841,848	-		GFF3800	0.14	+1.1
3,841,858	-		GFF3800	0.14	+0.1
3,841,874	-		GFF3800	0.16	-0.7
3,841,882	+		GFF3800	0.17	+0.4
3,841,882	+		GFF3800	0.17	+0.6
3,841,882	+		GFF3800	0.17	-0.4
3,841,882	+		GFF3800	0.17	-0.4
3,841,897	+		GFF3800	0.18	+2.3
3,841,922	-		GFF3800	0.20	+0.1
3,841,922	-		GFF3800	0.20	+0.2
3,841,938	-		GFF3800	0.21	+1.1
3,841,945	+		GFF3800	0.22	-0.2
3,841,953	-		GFF3800	0.23	-1.5
3,841,965	+		GFF3800	0.24	-1.6
3,841,969	+		GFF3800	0.24	-0.2
3,841,982	-		GFF3800	0.25	-0.1
3,841,996	+		GFF3800	0.27	-0.7
3,842,002	+		GFF3800	0.27	+1.1
3,842,002	+		GFF3800	0.27	-0.6
3,842,002	+		GFF3800	0.27	-0.5
3,842,002	+		GFF3800	0.27	-1.4
3,842,004	-		GFF3800	0.27	+1.4
3,842,007	+		GFF3800	0.28	-1.5
3,842,007	+		GFF3800	0.28	-2.6
3,842,010	-		GFF3800	0.28	-0.3
3,842,010	-		GFF3800	0.28	-0.8
3,842,015	-		GFF3800	0.28	-0.3
3,842,039	+		GFF3800	0.30	-1.3
3,842,039	+		GFF3800	0.30	+0.6
3,842,047	-		GFF3800	0.31	+0.5
3,842,090	+		GFF3800	0.35	+0.5
3,842,102	+		GFF3800	0.36	+1.2
3,842,102	+		GFF3800	0.36	-0.7
3,842,102	+		GFF3800	0.36	+0.7
3,842,102	+		GFF3800	0.36	+0.4
3,842,102	+		GFF3800	0.36	-0.1
3,842,102	+		GFF3800	0.36	+0.2
3,842,102	+		GFF3800	0.36	+1.1
3,842,107	+		GFF3800	0.36	+0.8
3,842,110	-		GFF3800	0.37	+0.5
3,842,110	-		GFF3800	0.37	-0.7
3,842,110	-		GFF3800	0.37	+0.0
3,842,110	-		GFF3800	0.37	+0.8
3,842,127	-		GFF3800	0.38	+0.4
3,842,127	-		GFF3800	0.38	-1.1
3,842,127	-		GFF3800	0.38	-0.8
3,842,149	+		GFF3800	0.40	+0.3
3,842,157	-		GFF3800	0.41	+0.3
3,842,159	+		GFF3800	0.41	+0.8
3,842,159	+		GFF3800	0.41	-0.6
3,842,167	-		GFF3800	0.42	+1.2
3,842,185	+		GFF3800	0.43	-2.9
3,842,224	+		GFF3800	0.47	-1.9
3,842,252	+		GFF3800	0.49	-0.0
3,842,258	+		GFF3800	0.50	-1.6
3,842,258	+		GFF3800	0.50	+1.5
3,842,261	-		GFF3800	0.50	-1.3
3,842,263	+		GFF3800	0.50	-1.2
3,842,263	+		GFF3800	0.50	+0.5
3,842,266	-		GFF3800	0.50	-0.6
3,842,273	+		GFF3800	0.51	-0.6
3,842,276	+		GFF3800	0.51	-0.2
3,842,276	+		GFF3800	0.51	-0.3
3,842,301	-		GFF3800	0.53	-0.2
3,842,392	+		GFF3800	0.61	-0.1
3,842,409	-		GFF3800	0.63	-0.1
3,842,453	+		GFF3800	0.67	-0.3
3,842,455	+		GFF3800	0.67	-1.2
3,842,455	+		GFF3800	0.67	+0.3
3,842,468	+		GFF3800	0.68	-0.0
3,842,468	+		GFF3800	0.68	+0.5
3,842,468	+		GFF3800	0.68	-1.3
3,842,476	-		GFF3800	0.69	+0.4
3,842,476	-		GFF3800	0.69	+1.6
3,842,477	+		GFF3800	0.69	+0.6
3,842,489	+		GFF3800	0.70	-0.8
3,842,489	+		GFF3800	0.70	+0.8
3,842,492	-		GFF3800	0.70	+0.4
3,842,494	+		GFF3800	0.70	-0.1
3,842,502	-		GFF3800	0.71	-2.1
3,842,506	+		GFF3800	0.71	-0.8
3,842,522	+		GFF3800	0.73	-0.2
3,842,530	+		GFF3800	0.74	-1.4
3,842,530	+		GFF3800	0.74	-1.2
3,842,530	+		GFF3800	0.74	-0.6
3,842,530	+		GFF3800	0.74	-0.4
3,842,530	+		GFF3800	0.74	-2.1
3,842,530	+		GFF3800	0.74	-1.9
3,842,530	+		GFF3800	0.74	+1.4
3,842,531	-		GFF3800	0.74	-1.8
3,842,538	-		GFF3800	0.74	+1.1
3,842,571	+		GFF3800	0.77	-1.6
3,842,571	+		GFF3800	0.77	-0.3
3,842,579	-		GFF3800	0.78	+0.6
3,842,579	-		GFF3800	0.78	+1.0
3,842,579	-		GFF3800	0.78	+1.7
3,842,592	+		GFF3800	0.79	-0.2
3,842,600	-		GFF3800	0.80	-0.3
3,842,631	+		GFF3800	0.82	-0.6
3,842,642	+		GFF3800	0.83	-0.5
3,842,642	+		GFF3800	0.83	-0.2
3,842,642	+		GFF3800	0.83	+0.3
3,842,642	+		GFF3800	0.83	-1.3
3,842,650	-		GFF3800	0.84	-0.1
3,842,650	-		GFF3800	0.84	-1.4
3,842,650	-		GFF3800	0.84	+0.4
3,842,650	-		GFF3800	0.84	-0.7
3,842,650	-		GFF3800	0.84	+0.5