Strain Fitness in Sphingobium sp. HT1-2 around GFF3798

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,838,758	+				+0.9
3,838,760	+				-1.6
3,838,760	+				-1.9
3,838,770	+				-0.4
3,838,770	+				-0.4
3,838,770	+				+1.7
3,838,770	+				+0.9
3,838,778	-				+0.2
3,838,778	-				-1.8
3,838,778	-				-1.3
3,838,778	-				+1.1
3,838,785	+				-1.4
3,838,803	-				-0.8
3,838,809	+				+0.8
3,838,814	+				-2.3
3,838,814	+				-0.4
3,838,817	-				-0.1
3,838,817	-				-0.2
3,838,822	-				-0.2
3,838,827	-				-2.0
3,838,844	+		GFF3797	0.12	-1.7
3,838,845	-		GFF3797	0.12	-0.0
3,838,870	-		GFF3797	0.17	-0.2
3,838,878	+		GFF3797	0.18	-0.5
3,838,880	+		GFF3797	0.18	+1.0
3,838,880	+		GFF3797	0.18	-0.3
3,838,880	+		GFF3797	0.18	+0.8
3,838,888	-		GFF3797	0.19	-1.3
3,838,888	-		GFF3797	0.19	-1.7
3,838,913	-		GFF3797	0.23	-1.0
3,838,918	+		GFF3797	0.24	+0.7
3,838,926	-		GFF3797	0.25	+0.1
3,838,956	+		GFF3797	0.30	-2.1
3,838,973	+		GFF3797	0.33	-0.2
3,838,973	+		GFF3797	0.33	+0.5
3,838,988	+		GFF3797	0.35	+1.0
3,838,996	-		GFF3797	0.37	-0.0
3,838,996	-		GFF3797	0.37	-0.7
3,839,023	+		GFF3797	0.41	-0.5
3,839,031	+		GFF3797	0.42	+0.9
3,839,031	+		GFF3797	0.42	-2.5
3,839,031	+		GFF3797	0.42	-1.9
3,839,037	-		GFF3797	0.43	+0.5
3,839,070	+		GFF3797	0.49	-0.1
3,839,073	-		GFF3797	0.49	+0.1
3,839,088	+		GFF3797	0.51	-0.4
3,839,096	-		GFF3797	0.53	+1.1
3,839,098	-		GFF3797	0.53	-1.3
3,839,144	+		GFF3797	0.60	-1.0
3,839,153	+		GFF3797	0.62	-0.6
3,839,153	+		GFF3797	0.62	-0.4
3,839,153	+		GFF3797	0.62	+1.2
3,839,153	+		GFF3797	0.62	+0.3
3,839,161	-		GFF3797	0.63	-0.7
3,839,166	-		GFF3797	0.64	+0.4
3,839,168	+		GFF3797	0.64	+0.1
3,839,168	+		GFF3797	0.64	-0.2
3,839,168	+		GFF3797	0.64	+0.3
3,839,168	+		GFF3797	0.64	-0.9
3,839,168	+		GFF3797	0.64	-1.1
3,839,168	+		GFF3797	0.64	+0.9
3,839,174	+		GFF3797	0.65	-2.8
3,839,176	-		GFF3797	0.66	-1.3
3,839,176	-		GFF3797	0.66	+0.7
3,839,176	-		GFF3797	0.66	+1.5
3,839,192	+		GFF3797	0.68	-1.9
3,839,198	+		GFF3797	0.69	+0.2
3,839,199	+		GFF3797	0.69	-0.3
3,839,199	+		GFF3797	0.69	+0.3
3,839,236	-		GFF3797	0.75	-1.5
3,839,239	+		GFF3797	0.76	+0.5
3,839,242	-		GFF3797	0.76	-1.5
3,839,262	+		GFF3797	0.79	-1.2
3,839,270	-		GFF3797	0.81	-0.6
3,839,281	+		GFF3797	0.82	-0.3
3,839,303	-		GFF3797	0.86	-1.7
3,839,353	-				+0.6
3,839,360	+				+1.3
3,839,363	-				-1.1
3,839,367	+				+0.8
3,839,368	-				-0.4
3,839,416	+				+0.6
3,839,416	+				-1.2
3,839,417	+				-1.6
3,839,424	-				-0.3
3,839,424	-				-1.7
3,839,471	-				+1.2
3,839,486	-				-1.3
3,839,490	-				-1.2
3,839,564	-		GFF3798	0.19	+0.4
3,839,564	-		GFF3798	0.19	-0.5
3,839,566	+		GFF3798	0.19	+0.4
3,839,584	+		GFF3798	0.22	-0.4
3,839,600	+		GFF3798	0.24	-1.3
3,839,681	-		GFF3798	0.36	+1.2
3,839,733	-		GFF3798	0.44	-0.2
3,839,770	-		GFF3798	0.50	-1.3
3,839,790	+		GFF3798	0.53	+0.7
3,839,790	+		GFF3798	0.53	-1.5
3,839,791	+		GFF3798	0.53	-0.5
3,839,798	-		GFF3798	0.54	+0.9
3,839,801	+		GFF3798	0.55	+0.4
3,839,803	+		GFF3798	0.55	+0.2
3,839,813	+		GFF3798	0.57	+0.9
3,839,813	+		GFF3798	0.57	-1.0
3,839,813	+		GFF3798	0.57	-1.5
3,839,813	+		GFF3798	0.57	-2.3
3,839,821	-		GFF3798	0.58	-1.5
3,839,821	-		GFF3798	0.58	-0.2
3,839,821	-		GFF3798	0.58	-0.4
3,839,821	-		GFF3798	0.58	-1.3
3,839,821	-		GFF3798	0.58	-1.5
3,839,821	-		GFF3798	0.58	+1.5
3,839,821	-		GFF3798	0.58	-1.5
3,839,821	-		GFF3798	0.58	+1.2
3,839,821	-		GFF3798	0.58	+0.8
3,839,843	-		GFF3798	0.61	+0.2
3,839,937	+		GFF3798	0.76	+1.4
3,839,937	+		GFF3798	0.76	-0.4
3,839,945	-		GFF3798	0.77	-0.1
3,840,065	-				-0.3
3,840,101	+				+0.1
3,840,106	+				+0.9
3,840,128	+				+0.3
3,840,134	+				+0.2
3,840,134	+				+0.6
3,840,134	+				-0.9
3,840,134	+				-0.4
3,840,134	+				-0.5
3,840,134	+				-0.2
3,840,169	+				-0.5
3,840,177	-				+1.6
3,840,178	+				+0.3
3,840,179	+				-0.1
3,840,189	+				-0.6
3,840,218	+				-0.3
3,840,227	+				+0.3
3,840,235	-				-1.2
3,840,241	+				+1.5
3,840,241	+				+1.3
3,840,246	+				-0.9
3,840,254	-				-0.0
3,840,263	-				-1.0
3,840,265	-				+0.9
3,840,319	+				-1.8
3,840,329	+				-0.2
3,840,388	+		GFF3799	0.13	+1.0
3,840,405	+		GFF3799	0.14	+0.1
3,840,410	+		GFF3799	0.15	+0.9
3,840,418	-		GFF3799	0.15	+0.4
3,840,418	-		GFF3799	0.15	-0.2
3,840,504	+		GFF3799	0.21	-0.2
3,840,504	+		GFF3799	0.21	+0.1
3,840,509	+		GFF3799	0.21	-1.5
3,840,509	-		GFF3799	0.21	+1.5
3,840,512	-		GFF3799	0.21	-0.2
3,840,512	-		GFF3799	0.21	+0.7
3,840,548	+		GFF3799	0.24	-0.9
3,840,580	+		GFF3799	0.26	-0.4
3,840,585	+		GFF3799	0.26	-0.2
3,840,608	-		GFF3799	0.28	-1.5
3,840,614	-		GFF3799	0.28	-0.7
3,840,623	-		GFF3799	0.29	-0.1
3,840,651	-		GFF3799	0.31	+0.8
3,840,651	-		GFF3799	0.31	-0.2
3,840,674	+		GFF3799	0.32	+0.9
3,840,675	+		GFF3799	0.32	-2.6
3,840,677	-		GFF3799	0.32	-1.1
3,840,682	-		GFF3799	0.33	+0.3
3,840,682	-		GFF3799	0.33	+0.5
3,840,699	-		GFF3799	0.34	-0.2
3,840,706	+		GFF3799	0.34	-0.2
3,840,721	+		GFF3799	0.35	-0.8
3,840,721	+		GFF3799	0.35	+1.3
3,840,721	+		GFF3799	0.35	-0.6
3,840,721	+		GFF3799	0.35	+0.0
3,840,721	+		GFF3799	0.35	-2.5
3,840,721	+		GFF3799	0.35	-0.8
3,840,721	+		GFF3799	0.35	-1.5
3,840,729	-		GFF3799	0.36	-0.0
3,840,729	-		GFF3799	0.36	-0.3
3,840,729	-		GFF3799	0.36	+0.1
3,840,734	-		GFF3799	0.36	-0.2
3,840,749	+		GFF3799	0.37	-0.2
3,840,757	-		GFF3799	0.38	-0.1
3,840,765	+		GFF3799	0.38	+0.5
3,840,807	+		GFF3799	0.41	+0.2
3,840,818	+		GFF3799	0.42	-0.7
3,840,818	+		GFF3799	0.42	+0.5
3,840,826	-		GFF3799	0.42	-1.3
3,840,826	-		GFF3799	0.42	-0.7
3,840,826	-		GFF3799	0.42	-0.2
3,840,887	-		GFF3799	0.46	-0.4
3,840,902	-		GFF3799	0.47	-1.4
3,840,948	+		GFF3799	0.50	-0.5
3,840,966	+		GFF3799	0.51	+1.2
3,840,974	-		GFF3799	0.52	-0.7
3,840,974	-		GFF3799	0.52	-2.5
3,840,993	+		GFF3799	0.53	-1.8
3,841,036	-		GFF3799	0.56	+0.2