Strain Fitness in Sphingobium sp. HT1-2 around GFF3719

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,759,489	+				+0.3
3,759,489	+				-0.2
3,759,491	-				-1.1
3,759,497	-				-0.3
3,759,502	+				-0.1
3,759,510	-				+0.8
3,759,513	+				-1.6
3,759,517	+				+0.3
3,759,517	+				+0.3
3,759,524	+				+0.2
3,759,525	-				-0.1
3,759,525	-				-1.3
3,759,525	-				+0.3
3,759,532	+				-0.2
3,759,540	-				-1.1
3,759,540	-				-1.0
3,759,560	+				-2.4
3,759,560	+				-1.4
3,759,604	+				+0.9
3,759,604	+				-1.5
3,759,604	+				+0.0
3,759,604	+				+0.9
3,759,604	+				+0.9
3,759,604	+				-0.1
3,759,604	+				-0.3
3,759,604	+				-1.5
3,759,604	+				+0.1
3,759,604	+				-0.9
3,759,604	+				-1.0
3,759,605	-				-0.9
3,759,609	+				+2.3
3,759,612	-				+0.3
3,759,612	-				+1.1
3,759,612	-				-0.4
3,759,612	-				-0.3
3,759,612	-				+0.3
3,759,612	-				+0.2
3,759,612	-				-1.5
3,759,612	-				+0.1
3,759,612	-				-0.4
3,759,612	-				-2.7
3,759,612	-				+0.0
3,759,612	-				+0.9
3,759,619	+				+0.8
3,759,622	-				-1.2
3,759,622	-				-0.4
3,759,622	-				+0.1
3,759,632	+				-0.4
3,759,632	+				-0.5
3,759,632	+				+1.9
3,759,632	+				+0.4
3,759,632	+				-0.7
3,759,632	+				-1.4
3,759,632	+				-1.6
3,759,632	+				-1.1
3,759,632	+				+0.2
3,759,632	+				+0.7
3,759,632	+				-0.2
3,759,632	+				-0.1
3,759,637	+				-0.8
3,759,637	+				-2.8
3,759,637	+				+0.2
3,759,637	+				-0.4
3,759,637	+				+0.8
3,759,637	+				-0.9
3,759,640	-				+0.5
3,759,640	-				-0.4
3,759,640	-				-0.4
3,759,640	-				-1.5
3,759,640	-				+0.8
3,759,640	-				+1.2
3,759,640	-				-0.3
3,759,640	-				-0.1
3,759,640	-				+1.6
3,759,640	-				-0.7
3,759,645	-				-0.7
3,759,645	-				-1.1
3,759,645	-				+2.0
3,759,645	-				-0.4
3,759,645	-				+0.3
3,759,663	-		GFF3717	0.11	-1.0
3,759,672	-		GFF3717	0.13	-0.3
3,759,676	-		GFF3717	0.13	+0.4
3,759,721	-		GFF3717	0.22	+0.9
3,759,754	+		GFF3717	0.28	-0.4
3,759,765	+		GFF3717	0.30	+0.6
3,759,777	+		GFF3717	0.32	+0.8
3,759,786	-		GFF3717	0.34	-1.1
3,759,787	+		GFF3717	0.34	-0.4
3,759,787	+		GFF3717	0.34	+0.1
3,759,835	+		GFF3717	0.42	-0.6
3,759,841	+		GFF3717	0.44	+0.3
3,759,843	-		GFF3717	0.44	-1.8
3,759,848	+		GFF3717	0.45	+1.5
3,759,848	+		GFF3717	0.45	+0.4
3,759,848	+		GFF3717	0.45	+0.1
3,759,851	-		GFF3717	0.45	-1.1
3,759,853	+		GFF3717	0.46	-1.1
3,759,853	+		GFF3717	0.46	+1.3
3,759,856	-		GFF3717	0.46	+0.3
3,759,856	-		GFF3717	0.46	-2.8
3,759,861	-		GFF3717	0.47	+0.5
3,759,861	-		GFF3717	0.47	-1.3
3,759,861	-		GFF3717	0.47	+0.7
3,759,861	-		GFF3717	0.47	-1.2
3,759,861	-		GFF3717	0.47	-2.1
3,759,861	-		GFF3717	0.47	+0.7
3,759,861	-		GFF3717	0.47	+0.8
3,759,877	+		GFF3717	0.50	+1.5
3,759,926	-		GFF3717	0.59	+0.5
3,759,932	+		GFF3717	0.60	-0.3
3,759,990	-		GFF3717	0.71	-2.1
3,759,990	-		GFF3717	0.71	+0.4
3,760,002	+		GFF3717	0.73	-2.3
3,760,022	+		GFF3717	0.77	-0.3
3,760,037	-		GFF3717	0.79	-0.3
3,760,073	+		GFF3717	0.86	-1.9
3,760,081	-		GFF3717	0.87	+0.9
3,760,103	+				+0.5
3,760,113	+				-2.1
3,760,165	+				-0.7
3,760,191	+				+0.2
3,760,198	+				-0.1
3,760,206	+				+0.9
3,760,206	+				-1.5
3,760,206	-				+1.0
3,760,216	+				+0.5
3,760,254	+		GFF3718	0.21	-1.3
3,760,256	+		GFF3718	0.22	+0.8
3,760,258	+		GFF3718	0.22	-1.2
3,760,259	+		GFF3718	0.23	-1.5
3,760,259	+		GFF3718	0.23	+0.0
3,760,259	+		GFF3718	0.23	+0.5
3,760,266	-		GFF3718	0.25	+1.5
3,760,266	-		GFF3718	0.25	+0.8
3,760,292	+		GFF3718	0.35	-1.9
3,760,316	+		GFF3718	0.43	+1.1
3,760,334	-		GFF3718	0.50	-1.8
3,760,334	-		GFF3718	0.50	-0.5
3,760,334	-		GFF3718	0.50	+0.2
3,760,334	-		GFF3718	0.50	+0.9
3,760,359	-		GFF3718	0.59	+1.4
3,760,364	-		GFF3718	0.61	+0.1
3,760,384	+		GFF3718	0.68	+1.1
3,760,384	+		GFF3718	0.68	+1.7
3,760,384	+		GFF3718	0.68	-0.7
3,760,384	+		GFF3718	0.68	+0.1
3,760,384	+		GFF3718	0.68	-2.2
3,760,392	-		GFF3718	0.71	+0.3
3,760,392	-		GFF3718	0.71	-0.1
3,760,392	-		GFF3718	0.71	-0.1
3,760,392	-		GFF3718	0.71	-0.5
3,760,400	+		GFF3718	0.74	-1.6
3,760,408	+		GFF3718	0.77	-0.5
3,760,408	-		GFF3718	0.77	-0.7
3,760,460	-				-0.9
3,760,472	+				-0.3
3,760,478	-				+0.6
3,760,483	-				-1.1
3,760,500	+				+0.1
3,760,505	+				-0.1
3,760,510	+				+0.3
3,760,510	+				+0.9
3,760,510	+				-1.2
3,760,513	-				+0.9
3,760,513	-				+1.5
3,760,518	-				-1.3
3,760,519	-		GFF3719	0.10	-1.7
3,760,545	-		GFF3719	0.19	+0.2
3,760,547	+		GFF3719	0.19	-1.9
3,760,547	+		GFF3719	0.19	-0.6
3,760,547	+		GFF3719	0.19	+0.3
3,760,547	+		GFF3719	0.19	-1.4
3,760,555	-		GFF3719	0.22	+0.1
3,760,555	-		GFF3719	0.22	-0.4
3,760,565	-		GFF3719	0.25	-1.7
3,760,591	-		GFF3719	0.33	+1.0
3,760,594	+		GFF3719	0.34	-0.2
3,760,594	+		GFF3719	0.34	-0.6
3,760,594	+		GFF3719	0.34	+1.0
3,760,595	-		GFF3719	0.35	+0.8
3,760,595	-		GFF3719	0.35	+0.1
3,760,602	-		GFF3719	0.37	+0.1
3,760,602	-		GFF3719	0.37	-1.0
3,760,602	-		GFF3719	0.37	+0.8
3,760,602	-		GFF3719	0.37	-0.3
3,760,663	+		GFF3719	0.56	+0.2
3,760,663	+		GFF3719	0.56	+0.1
3,760,663	+		GFF3719	0.56	-0.2
3,760,692	-		GFF3719	0.66	-0.0
3,760,720	+		GFF3719	0.75	+0.6
3,760,721	+		GFF3719	0.75	-0.9
3,760,725	+		GFF3719	0.76	-0.8
3,760,733	-		GFF3719	0.79	-0.4
3,760,745	+		GFF3719	0.83	-1.1
3,760,745	+		GFF3719	0.83	-0.2
3,760,753	-		GFF3719	0.85	-0.4
3,760,761	-		GFF3719	0.88	+0.7
3,760,761	-		GFF3719	0.88	-0.9
3,760,787	+				-1.5
3,760,788	-				+0.3
3,760,820	+				+0.5
3,760,820	+				+0.0
3,760,820	+				-1.0
3,760,828	-				-0.2
3,760,906	+				+0.0
3,760,908	+				+1.2
3,760,912	-				-0.7
3,760,916	-				+1.6
3,760,935	+				+0.5
3,760,945	+				-0.3
3,760,953	-				-1.4
3,760,953	-				-2.7
3,760,962	+				-0.1
3,760,962	+				+1.1
3,760,962	+				-0.3
3,760,962	-				+0.2
3,760,970	-				+1.5
3,760,970	-				+0.1
3,761,003	+				-1.7
3,761,032	+		GFF3720	0.10	-0.3
3,761,032	+		GFF3720	0.10	+0.0
3,761,032	-		GFF3720	0.10	+0.6
3,761,033	-		GFF3720	0.11	+1.2
3,761,041	-		GFF3720	0.12	+0.2
3,761,042	+		GFF3720	0.12	-0.5
3,761,042	+		GFF3720	0.12	-0.2
3,761,042	+		GFF3720	0.12	-0.4
3,761,042	+		GFF3720	0.12	-1.1
3,761,050	-		GFF3720	0.13	+2.0
3,761,050	-		GFF3720	0.13	+1.7
3,761,050	-		GFF3720	0.13	+0.1
3,761,050	-		GFF3720	0.13	+0.1
3,761,050	-		GFF3720	0.13	+1.4
3,761,051	+		GFF3720	0.13	+0.4
3,761,061	+		GFF3720	0.14	+0.3
3,761,061	+		GFF3720	0.14	+0.1
3,761,064	-		GFF3720	0.14	-0.0
3,761,068	+		GFF3720	0.15	-0.3
3,761,069	-		GFF3720	0.15	+0.1
3,761,069	-		GFF3720	0.15	-0.4
3,761,072	+		GFF3720	0.15	+1.4
3,761,077	+		GFF3720	0.16	-0.4
3,761,120	+		GFF3720	0.21	+1.2
3,761,124	+		GFF3720	0.21	+0.5
3,761,124	+		GFF3720	0.21	-0.1
3,761,124	+		GFF3720	0.21	+0.3
3,761,124	+		GFF3720	0.21	+0.2
3,761,128	-		GFF3720	0.22	-0.3
3,761,137	+		GFF3720	0.23	-0.2
3,761,137	+		GFF3720	0.23	-1.6
3,761,142	+		GFF3720	0.24	+1.5
3,761,150	-		GFF3720	0.25	-0.7
3,761,182	+		GFF3720	0.28	-0.4
3,761,182	+		GFF3720	0.28	-0.8
3,761,182	+		GFF3720	0.28	-0.6
3,761,187	+		GFF3720	0.29	+0.7
3,761,187	+		GFF3720	0.29	-0.1
3,761,190	-		GFF3720	0.29	+0.4
3,761,190	-		GFF3720	0.29	-0.2
3,761,190	-		GFF3720	0.29	-1.5
3,761,190	-		GFF3720	0.29	+0.4
3,761,190	-		GFF3720	0.29	-0.1
3,761,190	-		GFF3720	0.29	+0.8
3,761,195	-		GFF3720	0.30	+0.4
3,761,195	-		GFF3720	0.30	+0.9
3,761,195	-		GFF3720	0.30	+0.5
3,761,214	+		GFF3720	0.32	-0.3
3,761,214	+		GFF3720	0.32	-1.5
3,761,222	-		GFF3720	0.33	+0.9
3,761,222	-		GFF3720	0.33	+0.4
3,761,229	+		GFF3720	0.34	-0.2
3,761,237	-		GFF3720	0.35	+0.1
3,761,242	+		GFF3720	0.36	-1.2
3,761,251	-		GFF3720	0.37	+0.4
3,761,251	-		GFF3720	0.37	+0.2
3,761,251	-		GFF3720	0.37	+0.2
3,761,251	-		GFF3720	0.37	-1.1
3,761,251	-		GFF3720	0.37	-0.4
3,761,251	-		GFF3720	0.37	-1.2
3,761,264	+		GFF3720	0.38	-0.5
3,761,264	+		GFF3720	0.38	+0.4
3,761,264	+		GFF3720	0.38	+0.1
3,761,264	+		GFF3720	0.38	-1.4
3,761,264	+		GFF3720	0.38	+1.0
3,761,264	+		GFF3720	0.38	-0.8
3,761,264	+		GFF3720	0.38	-0.3
3,761,264	+		GFF3720	0.38	+1.0
3,761,264	+		GFF3720	0.38	+1.2
3,761,264	+		GFF3720	0.38	-0.7
3,761,264	+		GFF3720	0.38	+1.0
3,761,264	+		GFF3720	0.38	-0.6
3,761,264	+		GFF3720	0.38	+0.3
3,761,264	+		GFF3720	0.38	+0.4
3,761,264	+		GFF3720	0.38	-1.1
3,761,264	+		GFF3720	0.38	-1.8
3,761,272	-		GFF3720	0.39	+0.3
3,761,272	-		GFF3720	0.39	+0.1
3,761,272	-		GFF3720	0.39	-0.1
3,761,272	-		GFF3720	0.39	+0.4
3,761,272	-		GFF3720	0.39	+1.2
3,761,272	-		GFF3720	0.39	-3.3
3,761,272	-		GFF3720	0.39	-0.1
3,761,272	-		GFF3720	0.39	+1.6
3,761,283	+		GFF3720	0.41	+1.5
3,761,283	+		GFF3720	0.41	-1.9
3,761,283	+		GFF3720	0.41	+0.5
3,761,291	-		GFF3720	0.41	+0.7
3,761,298	+		GFF3720	0.42	+0.5
3,761,306	-		GFF3720	0.43	+0.8
3,761,355	-		GFF3720	0.49	+0.4
3,761,355	-		GFF3720	0.49	-1.5
3,761,378	-		GFF3720	0.52	-0.9
3,761,420	-		GFF3720	0.57	+1.6
3,761,466	+		GFF3720	0.62	-0.4
3,761,504	+		GFF3720	0.67	-1.4
3,761,509	+		GFF3720	0.68	-0.1
3,761,509	+		GFF3720	0.68	-0.0
3,761,514	+		GFF3720	0.68	+1.8
3,761,514	+		GFF3720	0.68	-0.1
3,761,522	-		GFF3720	0.69	-0.6
3,761,522	-		GFF3720	0.69	+0.9
3,761,523	-		GFF3720	0.69	-0.2
3,761,529	-		GFF3720	0.70	-0.1
3,761,583	+		GFF3720	0.76	-0.1
3,761,629	+		GFF3720	0.82	+0.1
3,761,632	-		GFF3720	0.82	+0.3
3,761,632	-		GFF3720	0.82	+0.4
3,761,634	+		GFF3720	0.83	+0.1
3,761,634	+		GFF3720	0.83	-0.0
3,761,634	+		GFF3720	0.83	-0.1
3,761,634	+		GFF3720	0.83	-0.1
3,761,634	+		GFF3720	0.83	-0.5
3,761,642	+		GFF3720	0.84	-0.3
3,761,642	-		GFF3720	0.84	+1.2
3,761,651	+		GFF3720	0.85	+0.8
3,761,661	+		GFF3720	0.86	-0.1
3,761,666	+		GFF3720	0.86	-1.6
3,761,676	+		GFF3720	0.88	-1.1
3,761,691	+		GFF3720	0.89	+0.9
3,761,712	-				-0.8
3,761,728	-				+1.0
3,761,733	-				+0.8
3,761,745	+				+0.4
3,761,748	-				+1.0
3,761,748	-				-0.1
3,761,753	-				-1.4
3,761,758	+				-0.3
3,761,758	-				-1.0
3,761,766	+				-0.1
3,761,766	+				+0.4
3,761,766	-				+0.8
3,761,772	-				-1.2
3,761,787	+				+0.0
3,761,792	+				-0.2
3,761,795	+				-1.6
3,761,795	-				-0.6