Strain Fitness in Sphingobium sp. HT1-2 around GFF3709

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,753,182	+		GFF3707	0.74	+1.3
3,753,182	+		GFF3707	0.74	-0.8
3,753,185	-		GFF3707	0.74	-0.6
3,753,185	-		GFF3707	0.74	+0.7
3,753,185	-		GFF3707	0.74	+0.2
3,753,214	-		GFF3707	0.77	-0.0
3,753,237	+		GFF3707	0.79	-0.6
3,753,238	+		GFF3707	0.79	-0.7
3,753,238	+		GFF3707	0.79	-0.2
3,753,250	+		GFF3707	0.80	-0.4
3,753,250	+		GFF3707	0.80	+0.8
3,753,271	+		GFF3707	0.82	+0.3
3,753,271	+		GFF3707	0.82	+0.5
3,753,273	-		GFF3707	0.82	+0.6
3,753,273	-		GFF3707	0.82	+0.0
3,753,293	-		GFF3707	0.84	-1.0
3,753,295	+		GFF3707	0.84	+0.7
3,753,303	-		GFF3707	0.85	+0.3
3,753,316	+		GFF3707	0.86	-0.7
3,753,323	-		GFF3707	0.87	-1.3
3,753,324	-		GFF3707	0.87	+0.6
3,753,365	-				+0.5
3,753,370	+				+1.1
3,753,378	-				+0.9
3,753,444	-				+0.2
3,753,486	-				-0.0
3,753,510	+				-0.9
3,753,518	-				-0.1
3,753,576	+		GFF3708	0.15	+0.3
3,753,576	+		GFF3708	0.15	+1.5
3,753,576	+		GFF3708	0.15	+1.2
3,753,576	+		GFF3708	0.15	-0.9
3,753,594	+		GFF3708	0.18	-0.4
3,753,603	+		GFF3708	0.19	-0.2
3,753,613	+		GFF3708	0.21	+0.1
3,753,620	+		GFF3708	0.22	-0.7
3,753,626	-		GFF3708	0.23	-0.6
3,753,667	-		GFF3708	0.29	+0.7
3,753,669	+		GFF3708	0.29	+0.6
3,753,676	+		GFF3708	0.30	-0.2
3,753,676	+		GFF3708	0.30	-0.6
3,753,676	+		GFF3708	0.30	+0.6
3,753,676	+		GFF3708	0.30	-0.7
3,753,678	-		GFF3708	0.30	-1.1
3,753,681	+		GFF3708	0.31	+1.1
3,753,700	+		GFF3708	0.34	-2.0
3,753,743	-		GFF3708	0.40	-0.1
3,753,750	-		GFF3708	0.41	+1.7
3,753,776	+		GFF3708	0.45	-0.2
3,753,784	-		GFF3708	0.46	-0.4
3,753,808	+		GFF3708	0.49	+0.0
3,753,809	-		GFF3708	0.50	-1.0
3,753,816	-		GFF3708	0.51	+0.0
3,753,817	+		GFF3708	0.51	-1.7
3,753,817	+		GFF3708	0.51	+0.1
3,753,817	+		GFF3708	0.51	-1.5
3,753,843	-		GFF3708	0.55	+0.9
3,753,845	+		GFF3708	0.55	+0.1
3,753,845	+		GFF3708	0.55	-0.2
3,753,845	+		GFF3708	0.55	-0.4
3,753,845	+		GFF3708	0.55	+2.0
3,753,845	+		GFF3708	0.55	+0.5
3,753,853	-		GFF3708	0.56	-2.3
3,753,853	-		GFF3708	0.56	-0.9
3,753,853	-		GFF3708	0.56	+0.2
3,753,853	-		GFF3708	0.56	-2.0
3,753,853	-		GFF3708	0.56	+0.0
3,753,853	-		GFF3708	0.56	-1.7
3,753,853	-		GFF3708	0.56	+0.3
3,753,853	-		GFF3708	0.56	+1.1
3,753,853	-		GFF3708	0.56	-1.0
3,753,853	-		GFF3708	0.56	-0.5
3,753,878	-		GFF3708	0.60	+0.5
3,753,896	-		GFF3708	0.62	-1.5
3,753,896	-		GFF3708	0.62	-0.5
3,753,902	+		GFF3708	0.63	-1.3
3,753,928	-		GFF3708	0.67	-0.5
3,753,963	+		GFF3708	0.72	+0.7
3,753,963	+		GFF3708	0.72	+0.4
3,753,971	-		GFF3708	0.73	+0.2
3,753,971	-		GFF3708	0.73	-1.2
3,754,009	-		GFF3708	0.79	-0.7
3,754,102	+				-0.1
3,754,102	+				+0.4
3,754,110	+				-0.7
3,754,110	-				+0.1
3,754,119	-				-1.4
3,754,122	+				+0.1
3,754,166	+				+0.9
3,754,191	-				+0.3
3,754,200	+				-0.6
3,754,200	+				+0.4
3,754,208	-				-0.3
3,754,218	-				-1.6
3,754,223	-				-0.1
3,754,230	-				-0.1
3,754,230	-				+0.9
3,754,233	-				+0.4
3,754,239	+		GFF3709	0.10	+1.9
3,754,256	-		GFF3709	0.12	+0.5
3,754,277	-		GFF3709	0.15	-1.6
3,754,277	-		GFF3709	0.15	-0.8
3,754,307	-		GFF3709	0.19	-2.0
3,754,337	+		GFF3709	0.22	-0.5
3,754,396	-		GFF3709	0.30	+1.2
3,754,398	-		GFF3709	0.30	-2.0
3,754,421	-		GFF3709	0.33	+0.5
3,754,459	-		GFF3709	0.38	+0.3
3,754,460	-		GFF3709	0.38	+0.7
3,754,479	+		GFF3709	0.40	+0.2
3,754,487	-		GFF3709	0.41	-0.7
3,754,514	-		GFF3709	0.45	-0.6
3,754,549	+		GFF3709	0.49	+0.0
3,754,556	+		GFF3709	0.50	-0.0
3,754,564	-		GFF3709	0.51	+0.3
3,754,600	+		GFF3709	0.56	-0.7
3,754,601	+		GFF3709	0.56	+0.3
3,754,601	+		GFF3709	0.56	-0.5
3,754,601	+		GFF3709	0.56	-1.1
3,754,601	+		GFF3709	0.56	+1.3
3,754,601	+		GFF3709	0.56	+0.5
3,754,601	+		GFF3709	0.56	-1.5
3,754,601	+		GFF3709	0.56	-1.3
3,754,601	+		GFF3709	0.56	-1.3
3,754,608	-		GFF3709	0.57	-0.8
3,754,608	-		GFF3709	0.57	+1.3
3,754,608	-		GFF3709	0.57	-0.5
3,754,609	-		GFF3709	0.57	-2.2
3,754,609	-		GFF3709	0.57	-2.3
3,754,609	-		GFF3709	0.57	+0.9
3,754,609	-		GFF3709	0.57	-0.3
3,754,641	-		GFF3709	0.61	-0.0
3,754,641	-		GFF3709	0.61	-0.2
3,754,659	+		GFF3709	0.63	-0.2
3,754,662	+		GFF3709	0.64	+0.2
3,754,664	+		GFF3709	0.64	-0.4
3,754,667	-		GFF3709	0.64	-0.4
3,754,672	-		GFF3709	0.65	-0.4
3,754,672	-		GFF3709	0.65	-0.8
3,754,672	-		GFF3709	0.65	+1.0
3,754,672	-		GFF3709	0.65	+0.2
3,754,672	-		GFF3709	0.65	-0.0
3,754,697	-		GFF3709	0.68	+0.6
3,754,697	-		GFF3709	0.68	+0.3
3,754,709	-		GFF3709	0.70	-0.7
3,754,723	+		GFF3709	0.71	+0.3
3,754,742	-		GFF3709	0.74	-0.1
3,754,746	-		GFF3709	0.74	+0.3
3,754,752	-		GFF3709	0.75	+1.1
3,754,763	-		GFF3709	0.76	-0.5
3,754,799	+		GFF3709	0.81	+0.8
3,754,818	+		GFF3709	0.83	-0.3
3,754,819	-		GFF3709	0.84	+0.9
3,754,830	+		GFF3709	0.85	-0.4
3,754,838	-		GFF3709	0.86	+1.0
3,754,838	-		GFF3709	0.86	+0.3
3,754,854	+		GFF3709	0.88	-0.5
3,754,862	-		GFF3709	0.89	+0.2
3,754,862	-		GFF3709	0.89	-1.3
3,754,914	-				-0.1
3,754,917	+				+1.3
3,754,926	+				-0.8
3,754,932	-				-0.1
3,754,969	+				-0.2
3,754,979	+				+0.3
3,754,984	-				+0.3
3,754,984	-				+1.7
3,755,054	+				-0.8
3,755,061	+				-0.9
3,755,069	-				-0.6
3,755,096	-		GFF3710	0.11	+1.6
3,755,098	+		GFF3710	0.11	-1.4
3,755,106	-		GFF3710	0.12	-1.2
3,755,115	-		GFF3710	0.13	+0.3
3,755,117	+		GFF3710	0.13	+0.5
3,755,117	+		GFF3710	0.13	+0.4
3,755,117	+		GFF3710	0.13	-0.0
3,755,125	-		GFF3710	0.15	+1.5
3,755,125	-		GFF3710	0.15	-0.5
3,755,145	+		GFF3710	0.17	-1.5
3,755,145	+		GFF3710	0.17	-2.1
3,755,175	-		GFF3710	0.21	+1.7
3,755,190	+		GFF3710	0.23	+1.0
3,755,214	-		GFF3710	0.26	-1.0
3,755,226	+		GFF3710	0.28	+0.9
3,755,230	+		GFF3710	0.29	+0.6
3,755,230	+		GFF3710	0.29	-0.9
3,755,231	+		GFF3710	0.29	+1.2
3,755,231	+		GFF3710	0.29	+1.6
3,755,261	+		GFF3710	0.33	-2.3
3,755,271	+		GFF3710	0.34	+0.6
3,755,271	+		GFF3710	0.34	+0.5
3,755,322	+		GFF3710	0.41	+0.5
3,755,324	+		GFF3710	0.41	+0.7
3,755,332	-		GFF3710	0.42	-0.6
3,755,332	-		GFF3710	0.42	-0.9
3,755,333	+		GFF3710	0.42	+1.3
3,755,333	+		GFF3710	0.42	-0.0
3,755,333	+		GFF3710	0.42	+0.2
3,755,341	-		GFF3710	0.44	+0.7
3,755,341	-		GFF3710	0.44	+0.4
3,755,341	-		GFF3710	0.44	-1.2
3,755,365	-		GFF3710	0.47	+1.3
3,755,371	-		GFF3710	0.48	+1.6
3,755,371	-		GFF3710	0.48	+1.6
3,755,381	-		GFF3710	0.49	+0.8
3,755,395	-		GFF3710	0.51	+0.1
3,755,415	-		GFF3710	0.53	-0.8
3,755,419	+		GFF3710	0.54	+1.1
3,755,434	+		GFF3710	0.56	+0.2
3,755,434	+		GFF3710	0.56	+1.1
3,755,436	+		GFF3710	0.56	+0.2
3,755,449	-		GFF3710	0.58	-0.5
3,755,469	-		GFF3710	0.61	+0.1
3,755,527	-		GFF3710	0.69	-0.7
3,755,583	+		GFF3710	0.76	+0.0
3,755,590	+		GFF3710	0.77	-0.2
3,755,591	-		GFF3710	0.77	-0.5
3,755,618	+		GFF3710	0.81	+0.2
3,755,659	+		GFF3710	0.86	-0.8
3,755,669	+		GFF3710	0.88	-0.8
3,755,677	-		GFF3710	0.89	-0.3
3,755,677	-		GFF3710	0.89	+1.2
3,755,736	+				-0.1
3,755,749	-				+0.9
3,755,749	-				-0.1
3,755,751	-				+1.8
3,755,755	+				+1.7
3,755,762	+				+1.8
3,755,770	-				+1.0
3,755,775	+				+1.5
3,755,776	+				+0.4
3,755,776	-				-1.1
3,755,778	-				-2.2
3,755,778	-				-0.7
3,755,778	-				-0.2
3,755,778	-				-1.0
3,755,778	-				+1.7
3,755,783	-				+1.8
3,755,783	-				+0.4
3,755,783	-				+1.1
3,755,784	-				+0.4
3,755,789	-				+1.4
3,755,802	+				+2.1
3,755,807	+				+0.3
3,755,815	-				+0.2
3,755,827	-				-0.4
3,755,837	+				+0.8
3,755,838	+				-0.4
3,755,838	+				-0.1
3,755,846	-				-0.1
3,755,850	+				+1.2
3,755,855	+				+1.1
3,755,863	-				+0.9
3,755,863	-				+0.7
3,755,863	-				-0.2
3,755,880	+		GFF3711	0.11	+0.6
3,755,883	-		GFF3711	0.12	+0.5
3,755,897	+		GFF3711	0.13	-2.0
3,755,912	-		GFF3711	0.15	-0.3
3,755,944	-		GFF3711	0.19	+1.0