Strain Fitness in Sphingobium sp. HT1-2 around GFF3705

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,749,823	+				+1.7
3,749,832	+				-0.2
3,749,855	+				+0.7
3,749,870	+				+0.3
3,749,906	-		GFF3704	0.11	+0.5
3,749,955	+		GFF3704	0.17	-0.4
3,749,971	+		GFF3704	0.19	+0.2
3,749,971	+		GFF3704	0.19	+0.0
3,749,971	+		GFF3704	0.19	+0.2
3,749,971	+		GFF3704	0.19	-0.3
3,749,971	+		GFF3704	0.19	-1.3
3,749,971	+		GFF3704	0.19	+0.7
3,749,971	+		GFF3704	0.19	+1.0
3,749,971	+		GFF3704	0.19	-0.6
3,749,971	+		GFF3704	0.19	+0.7
3,749,971	+		GFF3704	0.19	-1.2
3,749,979	-		GFF3704	0.20	+0.1
3,749,979	-		GFF3704	0.20	+1.5
3,749,979	-		GFF3704	0.20	+1.7
3,749,979	-		GFF3704	0.20	-0.0
3,749,979	-		GFF3704	0.20	+0.3
3,749,979	-		GFF3704	0.20	+0.3
3,749,999	-		GFF3704	0.22	+1.8
3,750,012	+		GFF3704	0.24	-0.6
3,750,026	-		GFF3704	0.25	-0.2
3,750,026	-		GFF3704	0.25	+0.0
3,750,028	+		GFF3704	0.26	+0.1
3,750,035	-		GFF3704	0.26	+0.9
3,750,076	+		GFF3704	0.31	-0.4
3,750,084	-		GFF3704	0.32	+0.6
3,750,094	-		GFF3704	0.33	+0.2
3,750,097	+		GFF3704	0.34	-0.0
3,750,129	-		GFF3704	0.37	+0.3
3,750,129	-		GFF3704	0.37	-0.8
3,750,134	-		GFF3704	0.38	-0.7
3,750,134	-		GFF3704	0.38	+0.6
3,750,188	+		GFF3704	0.44	-2.4
3,750,195	+		GFF3704	0.45	+1.4
3,750,196	-		GFF3704	0.45	+0.8
3,750,196	-		GFF3704	0.45	+0.0
3,750,196	-		GFF3704	0.45	-0.0
3,750,198	+		GFF3704	0.46	-1.0
3,750,212	-		GFF3704	0.47	+1.2
3,750,247	+		GFF3704	0.51	-1.6
3,750,247	+		GFF3704	0.51	-0.1
3,750,255	-		GFF3704	0.52	+0.2
3,750,310	-		GFF3704	0.59	-0.5
3,750,424	+		GFF3704	0.72	+0.7
3,750,450	+		GFF3704	0.75	-0.1
3,750,458	-		GFF3704	0.76	+0.4
3,750,461	+		GFF3704	0.77	+0.7
3,750,477	-		GFF3704	0.79	-0.1
3,750,489	-		GFF3704	0.80	+0.3
3,750,511	+		GFF3704	0.83	-0.0
3,750,521	-		GFF3704	0.84	-0.9
3,750,523	+		GFF3704	0.84	+0.2
3,750,526	-		GFF3704	0.84	+0.6
3,750,542	+		GFF3704	0.86	-0.6
3,750,547	+		GFF3704	0.87	+0.2
3,750,547	+		GFF3704	0.87	-2.4
3,750,550	-		GFF3704	0.87	+0.2
3,750,552	+		GFF3704	0.87	+0.9
3,750,552	+		GFF3704	0.87	+0.7
3,750,552	+		GFF3704	0.87	-1.0
3,750,555	-		GFF3704	0.88	-0.1
3,750,560	-		GFF3704	0.88	+1.7
3,750,567	+		GFF3704	0.89	+0.1
3,750,567	+		GFF3704	0.89	+0.5
3,750,567	+		GFF3704	0.89	+0.1
3,750,569	+		GFF3704	0.89	+0.8
3,750,579	+				-1.5
3,750,649	+				-2.4
3,750,658	+				-1.7
3,750,658	+				-0.4
3,750,664	+				+1.0
3,750,666	-				+0.0
3,750,668	+				-0.5
3,750,676	+				-0.5
3,750,697	-				-1.2
3,750,700	+				-1.2
3,750,708	-				-1.1
3,750,734	+				+0.2
3,750,739	+				-0.3
3,750,739	+				-0.4
3,750,743	-				+0.3
3,750,747	-				+0.4
3,750,772	-				-1.1
3,750,772	-				-1.1
3,750,772	-				-0.1
3,750,791	-				+0.3
3,750,842	-		GFF3705	0.12	+1.7
3,750,842	-		GFF3705	0.12	+0.8
3,750,849	+		GFF3705	0.13	-0.2
3,750,891	+		GFF3705	0.16	-2.6
3,750,891	+		GFF3705	0.16	+0.5
3,750,899	-		GFF3705	0.17	-0.3
3,750,900	+		GFF3705	0.17	-0.4
3,750,901	+		GFF3705	0.17	+0.5
3,750,901	+		GFF3705	0.17	+0.1
3,750,901	+		GFF3705	0.17	+0.2
3,750,901	+		GFF3705	0.17	-0.8
3,750,901	+		GFF3705	0.17	+0.2
3,750,901	+		GFF3705	0.17	-0.6
3,750,901	+		GFF3705	0.17	-0.1
3,750,901	+		GFF3705	0.17	+0.5
3,750,906	+		GFF3705	0.17	-0.1
3,750,906	+		GFF3705	0.17	-0.2
3,750,911	+		GFF3705	0.18	-1.4
3,750,917	-		GFF3705	0.18	+0.3
3,750,935	+		GFF3705	0.19	+1.3
3,750,935	+		GFF3705	0.19	+0.2
3,750,935	+		GFF3705	0.19	+1.2
3,750,937	+		GFF3705	0.20	-0.3
3,750,943	-		GFF3705	0.20	-0.5
3,750,946	+		GFF3705	0.20	-1.2
3,750,966	-		GFF3705	0.22	+0.6
3,750,966	-		GFF3705	0.22	+0.3
3,751,015	+		GFF3705	0.25	-0.2
3,751,042	+		GFF3705	0.27	+2.2
3,751,042	+		GFF3705	0.27	-1.0
3,751,042	+		GFF3705	0.27	-0.0
3,751,043	-		GFF3705	0.27	-0.3
3,751,046	-		GFF3705	0.28	+0.9
3,751,047	+		GFF3705	0.28	+0.4
3,751,050	-		GFF3705	0.28	+0.7
3,751,050	-		GFF3705	0.28	-1.4
3,751,050	-		GFF3705	0.28	+0.4
3,751,050	-		GFF3705	0.28	+0.5
3,751,071	-		GFF3705	0.30	-0.1
3,751,076	+		GFF3705	0.30	+0.6
3,751,079	+		GFF3705	0.30	+0.9
3,751,081	+		GFF3705	0.30	+0.2
3,751,081	+		GFF3705	0.30	+1.2
3,751,081	+		GFF3705	0.30	+0.2
3,751,081	+		GFF3705	0.30	-0.8
3,751,081	+		GFF3705	0.30	-2.0
3,751,081	+		GFF3705	0.30	-0.0
3,751,081	+		GFF3705	0.30	-2.3
3,751,081	+		GFF3705	0.30	-0.1
3,751,081	+		GFF3705	0.30	-0.3
3,751,081	+		GFF3705	0.30	-0.3
3,751,081	+		GFF3705	0.30	-0.4
3,751,081	+		GFF3705	0.30	+1.2
3,751,081	+		GFF3705	0.30	-0.0
3,751,081	+		GFF3705	0.30	-1.2
3,751,081	+		GFF3705	0.30	-1.8
3,751,081	+		GFF3705	0.30	+0.2
3,751,086	+		GFF3705	0.31	+0.4
3,751,086	+		GFF3705	0.31	-1.3
3,751,086	+		GFF3705	0.31	-1.4
3,751,086	+		GFF3705	0.31	-0.9
3,751,086	+		GFF3705	0.31	+0.6
3,751,088	-		GFF3705	0.31	+0.5
3,751,089	-		GFF3705	0.31	-1.7
3,751,089	-		GFF3705	0.31	+0.4
3,751,089	-		GFF3705	0.31	-1.7
3,751,089	-		GFF3705	0.31	+0.4
3,751,089	-		GFF3705	0.31	-0.9
3,751,089	-		GFF3705	0.31	-1.6
3,751,089	-		GFF3705	0.31	-0.4
3,751,089	-		GFF3705	0.31	+0.7
3,751,094	-		GFF3705	0.31	+0.1
3,751,094	-		GFF3705	0.31	+0.1
3,751,094	-		GFF3705	0.31	-1.1
3,751,094	-		GFF3705	0.31	-0.1
3,751,098	+		GFF3705	0.32	+2.2
3,751,122	+		GFF3705	0.33	+0.1
3,751,130	-		GFF3705	0.34	+0.2
3,751,152	+		GFF3705	0.36	-0.1
3,751,154	+		GFF3705	0.36	-0.5
3,751,159	+		GFF3705	0.36	-0.3
3,751,160	-		GFF3705	0.36	+1.3
3,751,164	+		GFF3705	0.36	-0.2
3,751,172	-		GFF3705	0.37	+0.2
3,751,172	-		GFF3705	0.37	+0.4
3,751,172	-		GFF3705	0.37	+0.6
3,751,172	-		GFF3705	0.37	-0.4
3,751,173	-		GFF3705	0.37	+1.0
3,751,183	+		GFF3705	0.38	+0.6
3,751,198	+		GFF3705	0.39	+0.9
3,751,198	+		GFF3705	0.39	-0.8
3,751,206	-		GFF3705	0.40	+0.8
3,751,208	-		GFF3705	0.40	-0.4
3,751,217	+		GFF3705	0.40	+0.6
3,751,217	+		GFF3705	0.40	+0.2
3,751,233	-		GFF3705	0.42	+1.1
3,751,243	-		GFF3705	0.42	+0.2
3,751,283	+		GFF3705	0.45	-1.0
3,751,301	+		GFF3705	0.47	+0.8
3,751,301	+		GFF3705	0.47	+0.6
3,751,301	+		GFF3705	0.47	+1.3
3,751,324	-		GFF3705	0.48	+0.4
3,751,324	-		GFF3705	0.48	+1.2
3,751,326	+		GFF3705	0.49	-0.4
3,751,336	-		GFF3705	0.49	-0.7
3,751,336	-		GFF3705	0.49	-0.7
3,751,338	+		GFF3705	0.49	-1.2
3,751,345	-		GFF3705	0.50	-0.0
3,751,346	-		GFF3705	0.50	-0.0
3,751,346	-		GFF3705	0.50	-0.3
3,751,346	-		GFF3705	0.50	-0.1
3,751,370	+		GFF3705	0.52	+1.0
3,751,378	-		GFF3705	0.52	+0.2
3,751,378	-		GFF3705	0.52	-0.1
3,751,415	+		GFF3705	0.55	+0.6
3,751,415	+		GFF3705	0.55	+1.0
3,751,423	-		GFF3705	0.56	-0.5
3,751,423	-		GFF3705	0.56	+0.9
3,751,423	-		GFF3705	0.56	-0.9
3,751,423	-		GFF3705	0.56	-0.0
3,751,423	-		GFF3705	0.56	+0.2
3,751,432	+		GFF3705	0.56	-0.4
3,751,432	-		GFF3705	0.56	-0.6
3,751,440	-		GFF3705	0.57	-0.3
3,751,505	-		GFF3705	0.62	-0.7
3,751,586	+		GFF3705	0.68	-0.2
3,751,586	+		GFF3705	0.68	-0.7
3,751,586	+		GFF3705	0.68	+1.5
3,751,586	+		GFF3705	0.68	+0.4
3,751,586	+		GFF3705	0.68	+0.7
3,751,586	+		GFF3705	0.68	+0.4
3,751,587	+		GFF3705	0.68	+1.7
3,751,591	+		GFF3705	0.68	-0.0
3,751,596	+		GFF3705	0.69	-0.7
3,751,599	-		GFF3705	0.69	+0.4
3,751,599	-		GFF3705	0.69	-1.0
3,751,604	-		GFF3705	0.69	+0.5
3,751,655	-		GFF3705	0.73	-0.3
3,751,664	-		GFF3705	0.74	-0.6
3,751,696	+		GFF3705	0.76	-0.5
3,751,696	+		GFF3705	0.76	+1.0
3,751,698	+		GFF3705	0.76	-0.5
3,751,704	-		GFF3705	0.77	-2.2
3,751,706	-		GFF3705	0.77	+0.7
3,751,752	+		GFF3705	0.80	+0.5
3,751,752	+		GFF3705	0.80	+0.3
3,751,760	-		GFF3705	0.81	-0.1
3,751,760	-		GFF3705	0.81	-0.5
3,751,760	-		GFF3705	0.81	+0.9
3,751,760	-		GFF3705	0.81	+0.9
3,751,760	-		GFF3705	0.81	-0.5
3,751,760	-		GFF3705	0.81	-0.8
3,751,760	-		GFF3705	0.81	+0.3
3,751,760	-		GFF3705	0.81	+0.5
3,751,765	+		GFF3705	0.81	-0.7
3,751,770	+		GFF3705	0.82	-0.3
3,751,778	-		GFF3705	0.82	+0.2
3,751,784	+		GFF3705	0.83	-1.1
3,751,784	+		GFF3705	0.83	-0.7
3,751,792	-		GFF3705	0.83	+0.1
3,751,792	-		GFF3705	0.83	+0.7
3,751,855	-		GFF3705	0.88	-0.7
3,751,898	+				-0.2
3,751,935	+				-0.3
3,751,960	+				-0.3
3,751,983	-				+0.0
3,751,996	+				-0.5
3,752,014	-				-0.7
3,752,023	+				+0.3
3,752,027	-				-0.0
3,752,033	-				-1.2
3,752,042	-				-0.0
3,752,060	+		GFF3706	0.14	-1.1
3,752,060	+		GFF3706	0.14	-0.1
3,752,060	+		GFF3706	0.14	+0.6
3,752,060	+		GFF3706	0.14	-0.0
3,752,065	+		GFF3706	0.15	-0.8
3,752,065	+		GFF3706	0.15	-1.2
3,752,068	-		GFF3706	0.16	-1.7
3,752,068	-		GFF3706	0.16	+0.5
3,752,070	+		GFF3706	0.17	+1.5
3,752,070	+		GFF3706	0.17	+0.2
3,752,073	-		GFF3706	0.18	-0.5
3,752,073	-		GFF3706	0.18	-0.4
3,752,073	-		GFF3706	0.18	+0.9
3,752,073	-		GFF3706	0.18	-0.8
3,752,086	+		GFF3706	0.21	+0.4
3,752,086	+		GFF3706	0.21	+0.7
3,752,111	+		GFF3706	0.29	+0.5
3,752,113	-		GFF3706	0.29	-0.0
3,752,169	+		GFF3706	0.46	+0.9
3,752,176	-		GFF3706	0.48	-1.6
3,752,200	+		GFF3706	0.54	-0.8
3,752,211	+		GFF3706	0.58	+1.3
3,752,219	-		GFF3706	0.60	-0.5
3,752,219	-		GFF3706	0.60	-0.1
3,752,241	-		GFF3706	0.66	+0.2
3,752,273	-		GFF3706	0.76	+0.6
3,752,273	-		GFF3706	0.76	-1.1
3,752,283	+		GFF3706	0.79	+1.2
3,752,288	+		GFF3706	0.80	+0.2
3,752,288	+		GFF3706	0.80	-0.7
3,752,291	-		GFF3706	0.81	-0.3
3,752,291	-		GFF3706	0.81	+0.5
3,752,291	-		GFF3706	0.81	+0.2
3,752,291	-		GFF3706	0.81	-0.5
3,752,296	-		GFF3706	0.82	+0.6
3,752,298	+		GFF3706	0.83	+0.5
3,752,298	+		GFF3706	0.83	-0.8
3,752,301	-		GFF3706	0.84	-0.5
3,752,303	+		GFF3706	0.84	+0.3
3,752,304	+		GFF3706	0.85	-0.2
3,752,306	-		GFF3706	0.85	-1.0
3,752,306	-		GFF3706	0.85	-0.2
3,752,364	-				-1.2
3,752,378	-				+0.3
3,752,443	+				-1.0
3,752,519	+		GFF3707	0.15	+0.5
3,752,521	+		GFF3707	0.15	+0.4
3,752,526	+		GFF3707	0.15	-0.4
3,752,526	+		GFF3707	0.15	-2.6
3,752,553	+		GFF3707	0.18	+0.8
3,752,553	+		GFF3707	0.18	-1.2
3,752,556	-		GFF3707	0.18	-0.4
3,752,557	-		GFF3707	0.18	-0.9
3,752,561	-		GFF3707	0.18	-0.6
3,752,566	-		GFF3707	0.19	-0.3
3,752,572	+		GFF3707	0.19	-0.8
3,752,576	-		GFF3707	0.20	-0.6
3,752,580	-		GFF3707	0.20	+0.3
3,752,585	-		GFF3707	0.21	-1.8
3,752,622	+		GFF3707	0.24	+0.3
3,752,631	-		GFF3707	0.25	+0.0
3,752,641	+		GFF3707	0.26	+0.0
3,752,649	-		GFF3707	0.26	+0.5
3,752,649	-		GFF3707	0.26	-0.7
3,752,669	+		GFF3707	0.28	-0.7
3,752,698	+		GFF3707	0.31	+1.0
3,752,698	+		GFF3707	0.31	-0.5
3,752,698	+		GFF3707	0.31	+0.5
3,752,706	-		GFF3707	0.31	-0.1
3,752,760	+		GFF3707	0.36	-1.0
3,752,772	+		GFF3707	0.37	-1.1
3,752,805	+		GFF3707	0.40	-0.4
3,752,839	-		GFF3707	0.43	-0.7
3,752,857	-		GFF3707	0.45	+0.5
3,752,866	+		GFF3707	0.46	-0.3
3,752,867	-		GFF3707	0.46	+0.6
3,752,872	-		GFF3707	0.46	-1.7
3,752,876	+		GFF3707	0.47	-1.1
3,752,876	+		GFF3707	0.47	+0.3
3,752,876	+		GFF3707	0.47	+1.1
3,752,876	+		GFF3707	0.47	-0.4
3,752,884	-		GFF3707	0.47	-0.8
3,752,884	-		GFF3707	0.47	+0.5
3,752,884	-		GFF3707	0.47	-0.6
3,752,886	+		GFF3707	0.47	-1.0
3,752,886	+		GFF3707	0.47	-0.1
3,752,886	+		GFF3707	0.47	+0.0
3,752,886	+		GFF3707	0.47	+1.3
3,752,886	+		GFF3707	0.47	+0.1
3,752,886	+		GFF3707	0.47	-1.0
3,752,886	+		GFF3707	0.47	-0.5
3,752,886	+		GFF3707	0.47	-1.5
3,752,886	+		GFF3707	0.47	-0.1
3,752,893	+		GFF3707	0.48	+0.3
3,752,893	+		GFF3707	0.48	+0.5
3,752,894	-		GFF3707	0.48	+1.2
3,752,894	-		GFF3707	0.48	+1.5
3,752,894	-		GFF3707	0.48	-0.6
3,752,894	-		GFF3707	0.48	-0.5
3,752,894	-		GFF3707	0.48	-0.2
3,752,894	-		GFF3707	0.48	+0.4
3,752,894	-		GFF3707	0.48	+0.0
3,752,894	-		GFF3707	0.48	-1.3
3,752,894	-		GFF3707	0.48	+1.3
3,752,901	-		GFF3707	0.49	+0.7
3,752,909	+		GFF3707	0.50	+1.0
3,752,911	+		GFF3707	0.50	+0.8
3,752,912	-		GFF3707	0.50	+0.4
3,752,919	-		GFF3707	0.50	-0.5
3,752,981	+		GFF3707	0.56	+1.3
3,753,002	+		GFF3707	0.58	+1.0
3,753,003	-		GFF3707	0.58	-0.8
3,753,010	-		GFF3707	0.59	+0.0
3,753,012	+		GFF3707	0.59	+0.8