Strain Fitness in Sphingobium sp. HT1-2 around GFF3681

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,724,419	-		GFF3680	0.29	-1.3
3,724,419	-		GFF3680	0.29	+0.3
3,724,433	+		GFF3680	0.30	-0.4
3,724,433	+		GFF3680	0.30	+0.3
3,724,437	+		GFF3680	0.31	-0.1
3,724,444	+		GFF3680	0.31	+0.1
3,724,466	+		GFF3680	0.33	-1.1
3,724,470	-		GFF3680	0.33	+0.1
3,724,471	+		GFF3680	0.33	-1.3
3,724,471	+		GFF3680	0.33	-0.1
3,724,476	+		GFF3680	0.33	+1.0
3,724,479	-		GFF3680	0.33	+1.3
3,724,509	+		GFF3680	0.36	+0.1
3,724,530	+		GFF3680	0.37	-0.3
3,724,532	-		GFF3680	0.37	-1.2
3,724,537	-		GFF3680	0.38	+0.4
3,724,537	-		GFF3680	0.38	-0.0
3,724,537	-		GFF3680	0.38	-0.3
3,724,579	+		GFF3680	0.41	-1.4
3,724,580	-		GFF3680	0.41	+0.2
3,724,586	-		GFF3680	0.41	-0.6
3,724,611	-		GFF3680	0.43	-0.1
3,724,611	-		GFF3680	0.43	-0.5
3,724,613	+		GFF3680	0.43	-1.1
3,724,638	+		GFF3680	0.45	-2.1
3,724,646	-		GFF3680	0.45	-1.4
3,724,647	+		GFF3680	0.45	-1.1
3,724,652	+		GFF3680	0.46	-1.1
3,724,652	+		GFF3680	0.46	+0.7
3,724,659	+		GFF3680	0.46	-0.2
3,724,660	+		GFF3680	0.46	+1.2
3,724,668	-		GFF3680	0.47	+0.0
3,724,668	-		GFF3680	0.47	+2.0
3,724,678	-		GFF3680	0.48	-0.6
3,724,682	+		GFF3680	0.48	+0.1
3,724,687	+		GFF3680	0.48	-0.5
3,724,687	+		GFF3680	0.48	+1.3
3,724,692	+		GFF3680	0.49	-0.1
3,724,694	+		GFF3680	0.49	+0.5
3,724,694	+		GFF3680	0.49	+0.9
3,724,694	+		GFF3680	0.49	-0.8
3,724,697	-		GFF3680	0.49	-1.1
3,724,699	+		GFF3680	0.49	-0.6
3,724,699	+		GFF3680	0.49	-1.0
3,724,699	+		GFF3680	0.49	-0.1
3,724,702	-		GFF3680	0.49	-1.1
3,724,704	+		GFF3680	0.49	+0.2
3,724,706	+		GFF3680	0.50	-0.5
3,724,706	+		GFF3680	0.50	-1.8
3,724,707	-		GFF3680	0.50	+0.1
3,724,707	-		GFF3680	0.50	-0.3
3,724,709	+		GFF3680	0.50	+1.0
3,724,712	-		GFF3680	0.50	-1.4
3,724,716	-		GFF3680	0.50	-0.5
3,724,720	+		GFF3680	0.50	-1.4
3,724,733	-		GFF3680	0.51	-1.9
3,724,765	-		GFF3680	0.54	+0.9
3,724,778	+		GFF3680	0.55	-2.3
3,724,795	+		GFF3680	0.56	-1.0
3,724,800	+		GFF3680	0.56	-0.5
3,724,800	+		GFF3680	0.56	-2.6
3,724,803	-		GFF3680	0.56	-2.0
3,724,803	-		GFF3680	0.56	-0.4
3,724,805	+		GFF3680	0.56	+1.4
3,724,805	+		GFF3680	0.56	-1.5
3,724,808	-		GFF3680	0.57	+0.7
3,724,829	+		GFF3680	0.58	-1.8
3,724,837	-		GFF3680	0.59	-0.4
3,724,837	-		GFF3680	0.59	-1.0
3,724,837	-		GFF3680	0.59	-0.2
3,724,837	-		GFF3680	0.59	+0.0
3,724,839	+		GFF3680	0.59	-0.0
3,724,846	+		GFF3680	0.59	+0.6
3,724,846	+		GFF3680	0.59	+0.8
3,724,847	-		GFF3680	0.59	-0.6
3,724,848	+		GFF3680	0.60	-1.1
3,724,854	-		GFF3680	0.60	+0.8
3,724,854	-		GFF3680	0.60	-1.3
3,724,854	-		GFF3680	0.60	-2.5
3,724,870	+		GFF3680	0.61	-0.6
3,724,870	+		GFF3680	0.61	-1.3
3,724,953	+		GFF3680	0.67	-0.2
3,724,953	-		GFF3680	0.67	+0.8
3,724,959	-		GFF3680	0.67	-1.1
3,724,959	-		GFF3680	0.67	+0.3
3,724,963	+		GFF3680	0.68	-1.0
3,724,997	+		GFF3680	0.70	-2.1
3,725,002	-		GFF3680	0.70	+0.0
3,725,022	+		GFF3680	0.72	+0.5
3,725,033	+		GFF3680	0.73	-0.4
3,725,041	-		GFF3680	0.73	-0.6
3,725,046	+		GFF3680	0.74	+1.2
3,725,065	+		GFF3680	0.75	-1.3
3,725,065	+		GFF3680	0.75	-1.4
3,725,065	+		GFF3680	0.75	-1.3
3,725,073	-		GFF3680	0.75	-0.1
3,725,115	+		GFF3680	0.78	+0.6
3,725,115	+		GFF3680	0.78	-1.1
3,725,115	+		GFF3680	0.78	-1.7
3,725,123	-		GFF3680	0.79	-1.1
3,725,123	-		GFF3680	0.79	+0.5
3,725,123	-		GFF3680	0.79	+0.2
3,725,123	-		GFF3680	0.79	-0.5
3,725,182	-		GFF3680	0.83	+0.0
3,725,187	+		GFF3680	0.83	-0.5
3,725,191	+		GFF3680	0.84	-1.6
3,725,204	-		GFF3680	0.85	-1.8
3,725,239	+		GFF3680	0.87	+0.9
3,725,239	+		GFF3680	0.87	+1.0
3,725,246	-		GFF3680	0.88	+0.2
3,725,247	-		GFF3680	0.88	-1.1
3,725,247	-		GFF3680	0.88	-2.4
3,725,247	-		GFF3680	0.88	+0.2
3,725,259	+		GFF3680	0.89	-1.1
3,725,297	+				-0.3
3,725,297	+				-0.6
3,725,299	-				-0.1
3,725,319	+				-0.5
3,725,322	-				-1.1
3,725,345	+				-0.1
3,725,351	+				-0.2
3,725,353	-				-1.2
3,725,353	-				-1.6
3,725,378	+				-0.1
3,725,378	+				+0.0
3,725,378	+				-0.1
3,725,378	+				+1.1
3,725,378	+				-1.1
3,725,386	-				+1.5
3,725,386	-				+0.6
3,725,386	-				-1.5
3,725,386	-				-0.8
3,725,389	+				+0.1
3,725,396	+				-1.2
3,725,397	-				+0.2
3,725,404	-				+0.6
3,725,404	-				-2.0
3,725,478	+		GFF3681	0.60	-0.5
3,725,478	+		GFF3681	0.60	-0.5
3,725,486	-		GFF3681	0.67	-1.1
3,725,486	-		GFF3681	0.67	+0.0
3,725,497	+		GFF3681	0.76	-0.4
3,725,497	+		GFF3681	0.76	-1.1
3,725,497	+		GFF3681	0.76	-0.3
3,725,505	-		GFF3681	0.83	-2.3
3,725,515	-				+0.4
3,725,516	-				-1.1
3,725,529	+				-1.6
3,725,551	+				-0.1
3,725,551	+				-1.1
3,725,552	-				+0.5
3,725,584	+		GFF3682	0.13	+0.9
3,725,609	+		GFF3682	0.28	-0.2
3,725,611	+		GFF3682	0.29	-0.6
3,725,617	-		GFF3682	0.32	-0.5
3,725,617	-		GFF3682	0.32	+0.4
3,725,621	-		GFF3682	0.34	-1.2
3,725,643	-		GFF3682	0.47	-1.4
3,725,654	-		GFF3682	0.53	+1.2
3,725,660	-		GFF3682	0.57	-0.7
3,725,669	+		GFF3682	0.62	+0.7
3,725,669	+		GFF3682	0.62	-0.4
3,725,669	+		GFF3682	0.62	-1.3
3,725,669	+		GFF3682	0.62	-0.1
3,725,669	+		GFF3682	0.62	+1.2
3,725,669	+		GFF3682	0.62	-1.1
3,725,669	+		GFF3682	0.62	-1.4
3,725,669	+		GFF3682	0.62	-0.1
3,725,669	+		GFF3682	0.62	+0.5
3,725,669	+		GFF3682	0.62	-0.4
3,725,669	+		GFF3682	0.62	-0.2
3,725,670	-		GFF3682	0.63	+0.4
3,725,675	-		GFF3682	0.66	-0.2
3,725,675	-		GFF3682	0.66	-2.3
3,725,675	-		GFF3682	0.66	-0.6
3,725,677	-		GFF3682	0.67	+1.1
3,725,677	-		GFF3682	0.67	-1.3
3,725,677	-		GFF3682	0.67	+0.5
3,725,677	-		GFF3682	0.67	+0.7
3,725,677	-		GFF3682	0.67	+0.1
3,725,677	-		GFF3682	0.67	+1.4
3,725,677	-		GFF3682	0.67	+1.4
3,725,677	-		GFF3682	0.67	-2.6
3,725,677	-		GFF3682	0.67	-0.4
3,725,677	-		GFF3682	0.67	-2.3
3,725,677	-		GFF3682	0.67	+0.2
3,725,677	-		GFF3682	0.67	-1.6
3,725,677	-		GFF3682	0.67	-0.1
3,725,677	-		GFF3682	0.67	+0.0
3,725,677	-		GFF3682	0.67	-1.6
3,725,677	-		GFF3682	0.67	-1.0
3,725,677	-		GFF3682	0.67	+0.9
3,725,733	+				-0.1
3,725,746	-				-0.0
3,725,746	-				-0.9
3,725,754	+				-1.7
3,725,763	+				-0.4
3,725,771	-				+0.4
3,725,771	-				+1.1
3,725,771	-				+0.4
3,725,776	+				+1.1
3,725,798	+				-0.3
3,725,799	+				+0.3
3,725,805	-				-0.3
3,725,813	-				-1.0
3,725,815	-				-0.2
3,725,821	-				+0.0
3,725,826	-				+1.1
3,725,830	-				+0.5
3,725,830	-				+1.3
3,725,830	-				-0.7
3,725,834	+				+1.2
3,725,842	-				-0.1
3,725,842	-				-1.0
3,725,853	+				+0.5
3,725,861	-				-1.3
3,725,861	-				-1.4
3,725,868	-				-1.4
3,725,908	+				-0.0
3,725,933	-				-1.2
3,725,946	+				-0.8
3,725,947	+				+0.2
3,725,954	-				-1.8
3,725,966	-				-1.4
3,725,975	+				+0.3
3,726,003	-		GFF3683	0.11	+0.8
3,726,014	+		GFF3683	0.12	+0.2
3,726,014	+		GFF3683	0.12	-1.2
3,726,022	-		GFF3683	0.13	+0.1
3,726,034	-		GFF3683	0.14	-1.3
3,726,035	+		GFF3683	0.15	-0.1
3,726,045	-		GFF3683	0.16	-0.5
3,726,045	-		GFF3683	0.16	-0.6
3,726,049	-		GFF3683	0.16	+0.2
3,726,056	+		GFF3683	0.17	-1.3
3,726,066	+		GFF3683	0.18	+0.2
3,726,074	-		GFF3683	0.18	-1.2
3,726,074	-		GFF3683	0.18	+0.4
3,726,087	-		GFF3683	0.20	+1.1
3,726,087	-		GFF3683	0.20	+0.9
3,726,120	+		GFF3683	0.23	-1.4
3,726,125	+		GFF3683	0.24	-1.9
3,726,133	-		GFF3683	0.24	-2.3
3,726,195	-		GFF3683	0.31	-1.7
3,726,200	-		GFF3683	0.31	-1.5
3,726,206	+		GFF3683	0.32	-1.1
3,726,216	+		GFF3683	0.33	-1.0
3,726,216	+		GFF3683	0.33	+0.7
3,726,216	+		GFF3683	0.33	-0.2
3,726,216	+		GFF3683	0.33	-1.9
3,726,216	+		GFF3683	0.33	-1.1
3,726,216	+		GFF3683	0.33	-0.4
3,726,216	+		GFF3683	0.33	-1.3
3,726,221	+		GFF3683	0.33	+0.4
3,726,221	+		GFF3683	0.33	-0.1
3,726,224	+		GFF3683	0.33	+0.3
3,726,224	-		GFF3683	0.33	+0.5
3,726,224	-		GFF3683	0.33	-0.7
3,726,224	-		GFF3683	0.33	+0.5
3,726,224	-		GFF3683	0.33	-0.4
3,726,224	-		GFF3683	0.33	-1.8
3,726,224	-		GFF3683	0.33	-1.2
3,726,224	-		GFF3683	0.33	-2.3
3,726,229	-		GFF3683	0.34	-0.7
3,726,229	-		GFF3683	0.34	-0.3
3,726,263	+		GFF3683	0.37	-0.1
3,726,263	-		GFF3683	0.37	-1.2
3,726,268	+		GFF3683	0.38	-0.0
3,726,268	+		GFF3683	0.38	+1.0
3,726,268	+		GFF3683	0.38	+0.6
3,726,268	+		GFF3683	0.38	-1.4
3,726,273	+		GFF3683	0.38	+0.1
3,726,273	+		GFF3683	0.38	-0.1
3,726,273	+		GFF3683	0.38	+0.6
3,726,276	-		GFF3683	0.39	+1.2
3,726,276	-		GFF3683	0.39	-1.0
3,726,278	+		GFF3683	0.39	-2.1
3,726,281	-		GFF3683	0.39	+0.4
3,726,317	+		GFF3683	0.43	+0.1
3,726,351	-		GFF3683	0.46	-1.8
3,726,354	-		GFF3683	0.46	-2.5
3,726,389	+		GFF3683	0.50	-1.1
3,726,397	-		GFF3683	0.51	-1.9
3,726,404	+		GFF3683	0.51	+1.0
3,726,404	+		GFF3683	0.51	-0.5
3,726,413	-		GFF3683	0.52	-1.1
3,726,422	+		GFF3683	0.53	-0.0
3,726,424	+		GFF3683	0.53	+0.1
3,726,436	+		GFF3683	0.55	+0.5
3,726,446	+		GFF3683	0.56	-2.0
3,726,483	-		GFF3683	0.59	-0.5
3,726,488	-		GFF3683	0.60	-2.2
3,726,495	+		GFF3683	0.60	+0.5
3,726,495	+		GFF3683	0.60	-0.4
3,726,496	+		GFF3683	0.61	-0.4
3,726,501	-		GFF3683	0.61	-0.6
3,726,504	-		GFF3683	0.61	+1.2
3,726,515	+		GFF3683	0.62	-1.2
3,726,515	+		GFF3683	0.62	+0.1
3,726,515	+		GFF3683	0.62	-0.1
3,726,515	+		GFF3683	0.62	+1.4
3,726,515	+		GFF3683	0.62	-1.9
3,726,519	+		GFF3683	0.63	-1.7
3,726,523	-		GFF3683	0.63	-0.4