Strain Fitness in Sphingobium sp. HT1-2 around GFF3653

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,695,319	+		GFF3651	0.77	-0.2
3,695,319	+		GFF3651	0.77	-1.8
3,695,319	+		GFF3651	0.77	-1.4
3,695,319	+		GFF3651	0.77	+0.3
3,695,319	+		GFF3651	0.77	+1.7
3,695,319	+		GFF3651	0.77	+0.2
3,695,322	-		GFF3651	0.78	+0.4
3,695,327	-		GFF3651	0.78	+0.3
3,695,327	-		GFF3651	0.78	+0.4
3,695,327	-		GFF3651	0.78	-0.1
3,695,327	-		GFF3651	0.78	-0.7
3,695,327	-		GFF3651	0.78	-0.1
3,695,327	-		GFF3651	0.78	-0.8
3,695,327	-		GFF3651	0.78	+1.3
3,695,327	-		GFF3651	0.78	+0.4
3,695,327	-		GFF3651	0.78	+0.6
3,695,334	+		GFF3651	0.79	-1.0
3,695,334	+		GFF3651	0.79	-1.0
3,695,336	+		GFF3651	0.80	+0.4
3,695,369	+		GFF3651	0.84	-0.3
3,695,419	-		GFF3651	0.90	+0.9
3,695,499	-				+0.4
3,695,562	+				-0.1
3,695,571	-				+0.8
3,695,611	+				-0.6
3,695,646	+				+0.6
3,695,652	-				-1.5
3,695,653	+				-1.4
3,695,708	+		GFF3652	0.14	-0.1
3,695,709	-		GFF3652	0.14	+0.1
3,695,709	-		GFF3652	0.14	+0.8
3,695,713	+		GFF3652	0.15	+0.4
3,695,723	+		GFF3652	0.16	+0.5
3,695,733	+		GFF3652	0.18	+0.4
3,695,733	+		GFF3652	0.18	-0.0
3,695,733	+		GFF3652	0.18	-0.4
3,695,733	+		GFF3652	0.18	-0.2
3,695,739	-		GFF3652	0.19	-0.4
3,695,739	-		GFF3652	0.19	-1.2
3,695,741	-		GFF3652	0.19	+0.7
3,695,746	+		GFF3652	0.20	-1.1
3,695,811	+		GFF3652	0.29	-0.4
3,695,848	+		GFF3652	0.34	+0.9
3,695,848	+		GFF3652	0.34	+0.4
3,695,851	+		GFF3652	0.35	-0.2
3,695,853	+		GFF3652	0.35	-0.3
3,695,859	-		GFF3652	0.36	+1.1
3,695,880	+		GFF3652	0.39	-0.9
3,695,893	+		GFF3652	0.41	+0.5
3,695,916	+		GFF3652	0.44	-0.5
3,695,916	+		GFF3652	0.44	+0.6
3,695,924	-		GFF3652	0.45	-0.0
3,695,973	+		GFF3652	0.52	-0.2
3,695,981	-		GFF3652	0.53	-0.4
3,696,005	-		GFF3652	0.57	-0.0
3,696,009	+		GFF3652	0.57	+0.6
3,696,030	-		GFF3652	0.60	+1.4
3,696,047	-		GFF3652	0.63	+0.3
3,696,050	-		GFF3652	0.63	-1.8
3,696,078	-		GFF3652	0.67	+0.8
3,696,078	-		GFF3652	0.67	-0.4
3,696,099	+		GFF3652	0.70	+1.4
3,696,099	+		GFF3652	0.70	-0.1
3,696,107	-		GFF3652	0.71	-0.2
3,696,107	-		GFF3652	0.71	-0.5
3,696,116	-		GFF3652	0.73	-0.4
3,696,156	-		GFF3652	0.78	-0.1
3,696,156	-		GFF3652	0.78	+0.2
3,696,168	+		GFF3652	0.80	-0.5
3,696,168	+		GFF3652	0.80	+0.4
3,696,173	+		GFF3652	0.81	+1.0
3,696,176	-		GFF3652	0.81	+0.2
3,696,181	+		GFF3652	0.82	-0.5
3,696,185	+		GFF3652	0.83	-2.2
3,696,189	-		GFF3652	0.83	-0.1
3,696,209	-		GFF3652	0.86	+0.3
3,696,209	-		GFF3652	0.86	-1.1
3,696,238	+				+0.1
3,696,238	+				+0.2
3,696,238	+				-1.7
3,696,238	+				-0.7
3,696,246	-				-1.0
3,696,246	-				+1.1
3,696,255	+				+0.2
3,696,264	+				+0.6
3,696,285	-				-0.1
3,696,309	-				+0.4
3,696,314	-				+0.1
3,696,326	+				-0.8
3,696,326	+				-0.9
3,696,326	+				-0.3
3,696,334	-				-0.3
3,696,334	-				-1.4
3,696,334	-				-0.5
3,696,334	-				-0.2
3,696,344	-				+1.0
3,696,353	+				+0.1
3,696,358	-				-1.1
3,696,363	+				+0.4
3,696,363	+				+0.8
3,696,383	-				+1.6
3,696,393	-				-0.3
3,696,407	+				+0.2
3,696,423	+				-0.6
3,696,442	+		GFF3653	0.11	-1.1
3,696,443	-		GFF3653	0.11	+0.8
3,696,450	-		GFF3653	0.11	-0.8
3,696,450	-		GFF3653	0.11	+0.6
3,696,451	-		GFF3653	0.11	+0.3
3,696,461	+		GFF3653	0.12	-1.6
3,696,469	-		GFF3653	0.13	+0.2
3,696,484	-		GFF3653	0.14	+0.4
3,696,494	+		GFF3653	0.14	+0.4
3,696,494	+		GFF3653	0.14	-0.3
3,696,561	-		GFF3653	0.19	-1.0
3,696,610	-		GFF3653	0.23	-1.7
3,696,612	+		GFF3653	0.23	-1.0
3,696,612	+		GFF3653	0.23	+1.7
3,696,624	+		GFF3653	0.24	-0.6
3,696,640	-		GFF3653	0.25	+0.3
3,696,652	-		GFF3653	0.26	+0.8
3,696,698	+		GFF3653	0.29	+0.4
3,696,713	-		GFF3653	0.31	+0.4
3,696,740	-		GFF3653	0.33	+0.8
3,696,742	-		GFF3653	0.33	+3.3
3,696,742	-		GFF3653	0.33	+0.1
3,696,754	-		GFF3653	0.34	-1.1
3,696,754	-		GFF3653	0.34	-0.5
3,696,757	-		GFF3653	0.34	+0.6
3,696,757	-		GFF3653	0.34	-1.2
3,696,757	-		GFF3653	0.34	+0.1
3,696,770	+		GFF3653	0.35	-1.5
3,696,784	-		GFF3653	0.36	+0.2
3,696,797	+		GFF3653	0.37	+1.1
3,696,807	+		GFF3653	0.38	-0.5
3,696,807	+		GFF3653	0.38	+0.3
3,696,810	-		GFF3653	0.38	-1.1
3,696,810	-		GFF3653	0.38	+0.6
3,696,815	-		GFF3653	0.38	-0.6
3,696,830	+		GFF3653	0.39	+1.0
3,696,846	+		GFF3653	0.40	-0.1
3,696,857	-		GFF3653	0.41	-0.0
3,696,889	-		GFF3653	0.44	+0.6
3,696,915	+		GFF3653	0.46	+0.5
3,696,963	-		GFF3653	0.49	-1.2
3,696,965	-		GFF3653	0.49	-0.5
3,696,988	+		GFF3653	0.51	-1.4
3,696,996	-		GFF3653	0.52	-1.1
3,697,003	-		GFF3653	0.52	+1.3
3,697,008	+		GFF3653	0.52	-0.1
3,697,008	+		GFF3653	0.52	-2.1
3,697,012	+		GFF3653	0.53	+1.4
3,697,012	+		GFF3653	0.53	+0.9
3,697,020	-		GFF3653	0.53	+0.3
3,697,020	-		GFF3653	0.53	-0.3
3,697,040	+		GFF3653	0.55	-0.6
3,697,040	+		GFF3653	0.55	-0.1
3,697,048	-		GFF3653	0.55	-0.9
3,697,074	+		GFF3653	0.57	+1.2
3,697,074	-		GFF3653	0.57	-1.6
3,697,082	-		GFF3653	0.58	+1.2
3,697,102	+		GFF3653	0.59	-0.9
3,697,102	+		GFF3653	0.59	-0.8
3,697,105	-		GFF3653	0.60	-0.6
3,697,109	+		GFF3653	0.60	-0.2
3,697,110	+		GFF3653	0.60	+1.7
3,697,117	-		GFF3653	0.60	-1.6
3,697,118	-		GFF3653	0.61	+0.6
3,697,153	+		GFF3653	0.63	+1.0
3,697,161	-		GFF3653	0.64	-0.6
3,697,183	-		GFF3653	0.65	+0.7
3,697,226	-		GFF3653	0.69	-0.8
3,697,253	+		GFF3653	0.71	-1.1
3,697,261	-		GFF3653	0.71	-0.9
3,697,263	-		GFF3653	0.71	+0.1
3,697,277	+		GFF3653	0.72	-1.7
3,697,277	+		GFF3653	0.72	+0.3
3,697,298	-		GFF3653	0.74	-0.7
3,697,346	+		GFF3653	0.77	-0.1
3,697,356	+		GFF3653	0.78	+0.4
3,697,356	+		GFF3653	0.78	-1.1
3,697,356	+		GFF3653	0.78	+0.5
3,697,356	+		GFF3653	0.78	+0.6
3,697,359	-		GFF3653	0.78	-0.4
3,697,364	-		GFF3653	0.79	-1.0
3,697,364	-		GFF3653	0.79	+0.2
3,697,366	+		GFF3653	0.79	-0.2
3,697,366	+		GFF3653	0.79	-1.6
3,697,372	-		GFF3653	0.79	-0.3
3,697,396	-		GFF3653	0.81	+0.3
3,697,406	+		GFF3653	0.82	-1.4
3,697,419	-		GFF3653	0.83	-2.2
3,697,419	-		GFF3653	0.83	+0.2
3,697,424	-		GFF3653	0.83	+1.1
3,697,424	-		GFF3653	0.83	+0.9
3,697,447	+		GFF3653	0.85	-0.0
3,697,447	+		GFF3653	0.85	-0.8
3,697,450	-		GFF3653	0.85	+0.3
3,697,530	+				-0.8
3,697,535	+				+0.8
3,697,535	+				-0.1
3,697,536	+				+0.9
3,697,536	+				-0.8
3,697,544	-				-1.1
3,697,544	-				-0.0
3,697,544	-				+0.0
3,697,547	+				+1.2
3,697,572	+				-1.5
3,697,572	+				-0.3
3,697,577	+				-0.2
3,697,620	+				+0.5
3,697,629	+				+0.4
3,697,654	-				+2.2
3,697,655	+				+0.7
3,697,655	+				+1.0
3,697,655	+				+0.7
3,697,663	-				+0.1
3,697,683	+				-0.1
3,697,725	-		GFF3654	0.14	+1.0
3,697,729	+		GFF3654	0.15	+0.1
3,697,735	+		GFF3654	0.16	+0.4
3,697,735	-		GFF3654	0.16	-0.0
3,697,739	+		GFF3654	0.17	+0.0
3,697,745	+		GFF3654	0.18	-0.3
3,697,745	+		GFF3654	0.18	-1.1
3,697,747	-		GFF3654	0.18	-0.1
3,697,750	+		GFF3654	0.19	-1.7
3,697,753	-		GFF3654	0.19	-2.9
3,697,760	+		GFF3654	0.21	+2.1
3,697,793	+		GFF3654	0.26	+0.1
3,697,801	+		GFF3654	0.28	-1.7
3,697,801	+		GFF3654	0.28	-0.3
3,697,801	+		GFF3654	0.28	-0.2
3,697,801	+		GFF3654	0.28	-0.1
3,697,809	-		GFF3654	0.29	-0.6
3,697,809	-		GFF3654	0.29	-0.4
3,697,809	-		GFF3654	0.29	-0.0
3,697,809	-		GFF3654	0.29	-1.6
3,697,809	-		GFF3654	0.29	-1.1
3,697,819	-		GFF3654	0.31	-1.3
3,697,833	+		GFF3654	0.34	-0.5
3,697,854	-		GFF3654	0.37	-0.4
3,697,866	-		GFF3654	0.39	-1.8
3,697,868	+		GFF3654	0.40	+0.4
3,697,876	-		GFF3654	0.41	-0.4
3,697,887	+		GFF3654	0.43	-1.0
3,697,887	+		GFF3654	0.43	+0.8
3,697,910	-		GFF3654	0.47	+0.3
3,697,912	+		GFF3654	0.48	-1.1
3,697,942	+		GFF3654	0.53	+0.3
3,697,963	+		GFF3654	0.57	-1.9
3,698,035	+		GFF3654	0.69	+0.2
3,698,057	+		GFF3654	0.73	-1.1
3,698,091	-		GFF3654	0.79	+0.6
3,698,116	-		GFF3654	0.84	+0.4
3,698,123	+		GFF3654	0.85	-0.8
3,698,230	-		GFF3655	0.18	-0.2
3,698,296	+		GFF3655	0.74	+0.2
3,698,373	-				-0.2
3,698,380	+				+0.2
3,698,420	-				-0.2
3,698,423	+		GFF3656	0.10	-0.1
3,698,423	+		GFF3656	0.10	-1.0
3,698,423	+		GFF3656	0.10	+0.3
3,698,423	+		GFF3656	0.10	-0.1
3,698,426	-		GFF3656	0.11	+0.8
3,698,431	-		GFF3656	0.12	-0.2
3,698,431	-		GFF3656	0.12	+0.5
3,698,446	+		GFF3656	0.16	-2.0
3,698,446	+		GFF3656	0.16	+0.3
3,698,448	-		GFF3656	0.17	-0.6
3,698,454	-		GFF3656	0.18	-0.9
3,698,454	-		GFF3656	0.18	+0.9
3,698,473	-		GFF3656	0.23	+0.5
3,698,492	+		GFF3656	0.28	-0.3
3,698,498	-		GFF3656	0.29	+1.0
3,698,500	-		GFF3656	0.30	-2.2
3,698,525	+		GFF3656	0.36	-0.9
3,698,592	+		GFF3656	0.53	+0.3
3,698,593	+		GFF3656	0.53	-1.4
3,698,613	+		GFF3656	0.59	-1.8