Strain Fitness in Sphingobium sp. HT1-2 around GFF3634

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,681,618	+				+0.2
3,681,621	+				-2.0
3,681,625	-				-0.3
3,681,626	-				-1.1
3,681,647	+				+0.0
3,681,650	+				+0.3
3,681,653	-				-0.8
3,681,660	+				-0.1
3,681,668	-				+1.1
3,681,673	+				+0.1
3,681,681	-				-0.8
3,681,706	+				-0.4
3,681,709	+				+1.5
3,681,712	-		GFF3633	0.10	-0.7
3,681,714	+		GFF3633	0.11	-0.4
3,681,714	+		GFF3633	0.11	+1.0
3,681,717	-		GFF3633	0.11	-0.9
3,681,722	-		GFF3633	0.11	+0.3
3,681,722	-		GFF3633	0.11	-2.1
3,681,728	+		GFF3633	0.12	+1.2
3,681,729	+		GFF3633	0.12	-0.8
3,681,731	-		GFF3633	0.13	+1.2
3,681,737	-		GFF3633	0.13	+0.2
3,681,742	+		GFF3633	0.14	+1.1
3,681,774	+		GFF3633	0.18	-0.4
3,681,782	-		GFF3633	0.19	+0.3
3,681,786	-		GFF3633	0.19	-0.9
3,681,798	+		GFF3633	0.21	-2.3
3,681,798	+		GFF3633	0.21	-0.7
3,681,802	+		GFF3633	0.21	+0.7
3,681,806	-		GFF3633	0.22	-0.2
3,681,824	+		GFF3633	0.24	-1.8
3,681,824	+		GFF3633	0.24	+0.3
3,681,829	+		GFF3633	0.24	+0.6
3,681,832	-		GFF3633	0.25	+1.0
3,681,856	-		GFF3633	0.27	+0.5
3,681,872	-		GFF3633	0.29	-0.5
3,681,885	+		GFF3633	0.31	+0.5
3,681,888	-		GFF3633	0.31	-1.8
3,681,888	-		GFF3633	0.31	+0.4
3,681,888	-		GFF3633	0.31	+0.9
3,681,888	-		GFF3633	0.31	+0.0
3,681,888	-		GFF3633	0.31	-0.7
3,681,893	-		GFF3633	0.32	+0.7
3,681,894	+		GFF3633	0.32	+0.4
3,681,913	+		GFF3633	0.34	+0.2
3,681,921	-		GFF3633	0.35	-1.5
3,681,921	-		GFF3633	0.35	-1.5
3,681,923	+		GFF3633	0.35	+0.1
3,681,923	+		GFF3633	0.35	-1.4
3,681,923	+		GFF3633	0.35	-1.8
3,681,923	+		GFF3633	0.35	-1.2
3,681,931	-		GFF3633	0.36	+0.8
3,681,931	-		GFF3633	0.36	-1.4
3,681,931	-		GFF3633	0.36	-2.0
3,681,931	-		GFF3633	0.36	+1.5
3,681,954	-		GFF3633	0.39	+1.0
3,681,969	-		GFF3633	0.41	+1.1
3,681,976	+		GFF3633	0.42	+0.6
3,681,987	-		GFF3633	0.43	-1.3
3,682,010	-		GFF3633	0.46	+0.3
3,682,042	-		GFF3633	0.50	+0.3
3,682,042	-		GFF3633	0.50	+0.0
3,682,043	-		GFF3633	0.50	+1.2
3,682,054	+		GFF3633	0.51	-0.3
3,682,061	+		GFF3633	0.52	-0.5
3,682,074	-		GFF3633	0.54	-0.3
3,682,103	-		GFF3633	0.57	+0.3
3,682,119	+		GFF3633	0.59	-1.4
3,682,119	+		GFF3633	0.59	+0.8
3,682,119	+		GFF3633	0.59	+0.2
3,682,126	-		GFF3633	0.60	+0.1
3,682,127	-		GFF3633	0.60	-0.4
3,682,171	+		GFF3633	0.65	-1.1
3,682,171	+		GFF3633	0.65	-0.6
3,682,185	-		GFF3633	0.67	-0.0
3,682,216	+		GFF3633	0.70	-0.8
3,682,221	-		GFF3633	0.71	-0.9
3,682,224	-		GFF3633	0.71	+0.6
3,682,226	-		GFF3633	0.72	-1.4
3,682,226	-		GFF3633	0.72	-0.8
3,682,229	+		GFF3633	0.72	-0.7
3,682,268	-		GFF3633	0.77	-0.1
3,682,280	-		GFF3633	0.78	-0.0
3,682,302	-		GFF3633	0.81	-2.1
3,682,302	-		GFF3633	0.81	-0.6
3,682,304	+		GFF3633	0.81	-0.1
3,682,313	+		GFF3633	0.82	-0.6
3,682,317	-		GFF3633	0.83	+0.7
3,682,328	+		GFF3633	0.84	+0.2
3,682,335	-		GFF3633	0.85	-0.5
3,682,337	+		GFF3633	0.85	-0.0
3,682,337	+		GFF3633	0.85	+0.3
3,682,337	+		GFF3633	0.85	+0.9
3,682,337	+		GFF3633	0.85	-0.4
3,682,345	-		GFF3633	0.86	+0.5
3,682,345	-		GFF3633	0.86	-1.9
3,682,361	+		GFF3633	0.88	+0.1
3,682,361	+		GFF3633	0.88	-1.9
3,682,361	+		GFF3633	0.88	-1.1
3,682,364	-		GFF3633	0.88	-0.3
3,682,366	+		GFF3633	0.88	-2.3
3,682,369	-		GFF3633	0.89	-0.1
3,682,369	-		GFF3633	0.89	+0.1
3,682,374	-		GFF3633	0.89	+0.6
3,682,374	-		GFF3633	0.89	+0.7
3,682,393	-				+0.5
3,682,417	+				-1.9
3,682,426	+				-1.0
3,682,471	+				+1.0
3,682,471	+				-0.9
3,682,471	+				-0.7
3,682,471	+				-0.3
3,682,471	+				-0.2
3,682,471	+				-0.5
3,682,471	+				-0.1
3,682,471	+				-0.7
3,682,471	+				-0.8
3,682,471	+				+0.1
3,682,471	+				-0.3
3,682,471	+				-0.4
3,682,471	+				-0.7
3,682,471	+				+1.7
3,682,477	+				-1.1
3,682,479	-				-1.8
3,682,479	-				+1.6
3,682,479	-				-1.1
3,682,479	-				+0.3
3,682,479	-				+0.7
3,682,481	+				-0.6
3,682,481	+				+0.3
3,682,483	+				+0.6
3,682,489	-				-0.9
3,682,494	+				-0.5
3,682,502	-				-2.4
3,682,514	+				-0.1
3,682,514	+				-0.5
3,682,514	+				-0.5
3,682,514	+				-0.2
3,682,522	-				-0.4
3,682,537	+				+1.0
3,682,545	-				+1.3
3,682,551	+				+1.2
3,682,566	+				-2.6
3,682,568	-				+0.7
3,682,595	+				+0.5
3,682,595	+				+0.4
3,682,603	-				+0.6
3,682,603	-				-0.9
3,682,603	-				+0.7
3,682,603	-				-0.6
3,682,603	-				-0.4
3,682,603	-				-0.9
3,682,639	-				+0.3
3,682,639	-				-1.5
3,682,649	-				+0.1
3,682,659	-				+0.3
3,682,660	+				-0.2
3,682,661	+				-2.4
3,682,661	+				+0.2
3,682,661	+				+0.5
3,682,661	+				+0.4
3,682,661	+				+0.3
3,682,664	-				+0.0
3,682,669	-				+0.8
3,682,669	-				+1.5
3,682,671	+				-0.3
3,682,697	+				-2.0
3,682,698	-				+0.3
3,682,705	-		GFF3634	0.11	-1.5
3,682,731	-		GFF3634	0.13	-1.1
3,682,735	+		GFF3634	0.14	+0.8
3,682,735	+		GFF3634	0.14	+0.9
3,682,735	+		GFF3634	0.14	-0.3
3,682,741	+		GFF3634	0.14	-1.1
3,682,741	+		GFF3634	0.14	-0.4
3,682,743	-		GFF3634	0.15	-0.5
3,682,747	+		GFF3634	0.15	-1.1
3,682,749	-		GFF3634	0.15	-1.6
3,682,752	+		GFF3634	0.16	+0.5
3,682,752	+		GFF3634	0.16	-1.3
3,682,752	+		GFF3634	0.16	-2.5
3,682,752	+		GFF3634	0.16	-2.1
3,682,752	+		GFF3634	0.16	-1.5
3,682,752	+		GFF3634	0.16	-0.1
3,682,752	+		GFF3634	0.16	-0.1
3,682,752	+		GFF3634	0.16	-0.7
3,682,752	+		GFF3634	0.16	+1.5
3,682,752	+		GFF3634	0.16	+0.1
3,682,752	+		GFF3634	0.16	-1.7
3,682,752	+		GFF3634	0.16	-1.1
3,682,752	+		GFF3634	0.16	+0.1
3,682,752	+		GFF3634	0.16	-2.3
3,682,752	+		GFF3634	0.16	+1.1
3,682,752	+		GFF3634	0.16	+0.2
3,682,752	+		GFF3634	0.16	-1.4
3,682,752	+		GFF3634	0.16	-0.1
3,682,752	+		GFF3634	0.16	-0.7
3,682,752	+		GFF3634	0.16	-0.5
3,682,752	+		GFF3634	0.16	-0.2
3,682,753	-		GFF3634	0.16	-0.3
3,682,759	+		GFF3634	0.16	+0.1
3,682,760	-		GFF3634	0.17	+0.3
3,682,760	-		GFF3634	0.17	+0.4
3,682,760	-		GFF3634	0.17	+0.5
3,682,760	-		GFF3634	0.17	-0.6
3,682,760	-		GFF3634	0.17	-1.1
3,682,760	-		GFF3634	0.17	+0.1
3,682,760	-		GFF3634	0.17	+0.7
3,682,760	-		GFF3634	0.17	+0.2
3,682,760	-		GFF3634	0.17	+0.8
3,682,760	-		GFF3634	0.17	-0.4
3,682,760	-		GFF3634	0.17	+1.3
3,682,760	-		GFF3634	0.17	-0.4
3,682,760	-		GFF3634	0.17	+0.0
3,682,762	-		GFF3634	0.17	-0.5
3,682,762	-		GFF3634	0.17	-0.2
3,682,766	+		GFF3634	0.17	-0.1
3,682,767	+		GFF3634	0.17	-2.5
3,682,767	+		GFF3634	0.17	-1.9
3,682,767	-		GFF3634	0.17	-1.1
3,682,767	-		GFF3634	0.17	+0.0
3,682,780	-		GFF3634	0.19	+0.5
3,682,788	-		GFF3634	0.19	-1.0
3,682,788	-		GFF3634	0.19	+1.1
3,682,788	-		GFF3634	0.19	-2.1
3,682,793	-		GFF3634	0.20	-0.8
3,682,801	-		GFF3634	0.21	+0.6
3,682,833	+		GFF3634	0.24	-1.9
3,682,841	-		GFF3634	0.25	+0.2
3,682,843	-		GFF3634	0.25	+0.7
3,682,875	+		GFF3634	0.29	+0.4
3,682,877	+		GFF3634	0.29	+1.0
3,682,880	+		GFF3634	0.29	+0.5
3,682,880	+		GFF3634	0.29	-2.0
3,682,883	-		GFF3634	0.30	-2.4
3,682,888	-		GFF3634	0.30	-0.6
3,682,888	-		GFF3634	0.30	-0.6
3,682,930	+		GFF3634	0.34	+0.8
3,682,937	+		GFF3634	0.35	-2.5
3,682,937	+		GFF3634	0.35	+0.2
3,682,942	+		GFF3634	0.36	-1.6
3,682,942	+		GFF3634	0.36	-2.1
3,682,945	-		GFF3634	0.36	+0.8
3,682,945	-		GFF3634	0.36	+0.2
3,682,945	-		GFF3634	0.36	-0.7
3,682,947	+		GFF3634	0.36	-0.2
3,682,950	-		GFF3634	0.37	-0.3
3,682,950	-		GFF3634	0.37	-1.1
3,682,966	+		GFF3634	0.38	-0.8
3,682,966	+		GFF3634	0.38	+0.5
3,682,989	-		GFF3634	0.41	-1.5
3,683,001	+		GFF3634	0.42	+0.9
3,683,009	-		GFF3634	0.43	+1.4
3,683,025	+		GFF3634	0.45	+0.1
3,683,030	+		GFF3634	0.45	-1.5
3,683,038	-		GFF3634	0.46	-1.8
3,683,055	+		GFF3634	0.48	-1.1
3,683,063	-		GFF3634	0.49	+0.1
3,683,063	-		GFF3634	0.49	+0.7
3,683,074	+		GFF3634	0.50	+1.0
3,683,074	+		GFF3634	0.50	+1.5
3,683,074	+		GFF3634	0.50	-0.5
3,683,074	+		GFF3634	0.50	+0.9
3,683,082	-		GFF3634	0.51	-0.3
3,683,082	-		GFF3634	0.51	-2.4
3,683,082	-		GFF3634	0.51	-1.1
3,683,088	+		GFF3634	0.51	+0.2
3,683,103	-		GFF3634	0.53	-0.8
3,683,115	+		GFF3634	0.54	-1.5
3,683,133	+		GFF3634	0.56	+0.6
3,683,153	-		GFF3634	0.58	-2.3
3,683,153	-		GFF3634	0.58	+0.3
3,683,158	+		GFF3634	0.59	-0.5
3,683,165	+		GFF3634	0.59	+0.7
3,683,171	-		GFF3634	0.60	+0.3
3,683,173	-		GFF3634	0.60	-1.4
3,683,188	+		GFF3634	0.62	-0.8
3,683,194	-		GFF3634	0.62	+0.6
3,683,215	+		GFF3634	0.65	-0.1
3,683,224	-		GFF3634	0.66	-0.4
3,683,251	+		GFF3634	0.68	+0.7
3,683,277	-		GFF3634	0.71	+0.4
3,683,282	-		GFF3634	0.72	+1.3
3,683,334	+		GFF3634	0.77	-0.6
3,683,334	+		GFF3634	0.77	+0.6
3,683,341	-		GFF3634	0.78	-3.0
3,683,342	-		GFF3634	0.78	+0.8
3,683,342	-		GFF3634	0.78	-0.1
3,683,342	-		GFF3634	0.78	-1.1
3,683,342	-		GFF3634	0.78	+1.7
3,683,342	-		GFF3634	0.78	+0.7
3,683,342	-		GFF3634	0.78	-1.8
3,683,342	-		GFF3634	0.78	-1.7
3,683,342	-		GFF3634	0.78	+0.4
3,683,342	-		GFF3634	0.78	+0.3
3,683,363	+		GFF3634	0.80	-0.1
3,683,365	+		GFF3634	0.81	-1.6
3,683,365	+		GFF3634	0.81	-0.4
3,683,371	-		GFF3634	0.81	-0.7
3,683,373	-		GFF3634	0.81	-1.8
3,683,378	-		GFF3634	0.82	-0.1
3,683,378	-		GFF3634	0.82	-1.8
3,683,380	+		GFF3634	0.82	-0.1
3,683,380	+		GFF3634	0.82	-1.6
3,683,380	+		GFF3634	0.82	+0.2
3,683,380	+		GFF3634	0.82	-1.5
3,683,380	+		GFF3634	0.82	-0.5
3,683,388	-		GFF3634	0.83	+0.7
3,683,388	-		GFF3634	0.83	+0.2
3,683,388	-		GFF3634	0.83	+1.6
3,683,439	-		GFF3634	0.88	-1.4
3,683,439	-		GFF3634	0.88	-1.3
3,683,441	+		GFF3634	0.89	-0.9
3,683,441	+		GFF3634	0.89	-0.7
3,683,473	+				+0.1
3,683,473	+				+1.0
3,683,481	-				+0.4
3,683,481	-				+0.6
3,683,494	+				-2.5
3,683,517	+				-0.8
3,683,559	-				-1.5
3,683,562	-				-1.8
3,683,593	+				+1.1
3,683,593	+				-0.4
3,683,593	+				+1.0
3,683,596	-				-2.3
3,683,601	-				-0.3
3,683,606	-				-0.8
3,683,606	-				-0.2
3,683,606	-				-0.3
3,683,612	+				+0.3
3,683,617	+				-0.7
3,683,617	+				+0.4
3,683,617	+				-1.8
3,683,617	+				-1.2
3,683,617	+				+0.7
3,683,617	+				-1.4
3,683,617	+				-0.4
3,683,622	+				-1.9
3,683,622	+				-0.5
3,683,622	+				-0.0
3,683,622	+				-0.3
3,683,622	+				-0.5
3,683,622	+				+0.4
3,683,625	-				+0.6
3,683,625	-				-1.7
3,683,625	-				-0.6
3,683,625	-				-0.3
3,683,625	-				+0.4
3,683,625	-				+1.2
3,683,625	-				-1.0
3,683,630	-				-1.3
3,683,630	-				-1.0
3,683,630	-				-3.0
3,683,630	-				-1.4
3,683,630	-				-0.3
3,683,648	+				-1.3
3,683,682	+		GFF3635	0.11	-0.9
3,683,687	+		GFF3635	0.11	-1.6
3,683,687	+		GFF3635	0.11	+0.9
3,683,687	+		GFF3635	0.11	+0.5
3,683,687	+		GFF3635	0.11	+0.1
3,683,687	+		GFF3635	0.11	-1.4
3,683,695	-		GFF3635	0.12	-0.7
3,683,695	-		GFF3635	0.12	+0.9
3,683,695	-		GFF3635	0.12	-1.0
3,683,695	-		GFF3635	0.12	-1.9
3,683,695	-		GFF3635	0.12	-1.8
3,683,695	-		GFF3635	0.12	-1.1
3,683,697	+		GFF3635	0.12	+2.0
3,683,697	+		GFF3635	0.12	+0.2
3,683,705	-		GFF3635	0.13	-1.5
3,683,705	-		GFF3635	0.13	+0.2
3,683,717	+		GFF3635	0.14	+0.3
3,683,748	+		GFF3635	0.17	-1.5
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