Strain Fitness in Sphingobium sp. HT1-2 around GFF3611

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,657,345	-		GFF3609	0.32	-0.3
3,657,406	+		GFF3609	0.47	+0.4
3,657,428	+		GFF3609	0.52	+0.0
3,657,428	+		GFF3609	0.52	-0.8
3,657,428	+		GFF3609	0.52	-0.1
3,657,428	+		GFF3609	0.52	-1.4
3,657,436	-		GFF3609	0.54	+0.5
3,657,436	-		GFF3609	0.54	+0.2
3,657,436	-		GFF3609	0.54	-0.3
3,657,436	-		GFF3609	0.54	-0.1
3,657,436	-		GFF3609	0.54	-0.1
3,657,487	-		GFF3609	0.66	-0.4
3,657,492	-		GFF3609	0.68	+0.1
3,657,521	+		GFF3609	0.75	-0.1
3,657,527	+		GFF3609	0.76	-0.7
3,657,527	+		GFF3609	0.76	-1.7
3,657,528	-		GFF3609	0.76	-0.1
3,657,533	+		GFF3609	0.78	-0.2
3,657,534	+		GFF3609	0.78	-0.8
3,657,534	+		GFF3609	0.78	+1.6
3,657,535	-		GFF3609	0.78	-1.6
3,657,541	-		GFF3609	0.80	-0.9
3,657,543	+		GFF3609	0.80	-0.4
3,657,543	+		GFF3609	0.80	-0.2
3,657,551	-		GFF3609	0.82	+1.6
3,657,553	+		GFF3609	0.83	+0.9
3,657,553	-		GFF3609	0.83	-0.7
3,657,579	+		GFF3609	0.89	-2.5
3,657,607	+				+0.7
3,657,615	-				+0.3
3,657,617	+				-2.2
3,657,646	-				-1.4
3,657,653	+				-0.3
3,657,653	+				+1.7
3,657,659	+				+0.9
3,657,661	-				+1.2
3,657,662	-				+0.6
3,657,667	-				-0.1
3,657,691	-		GFF3610	0.11	-1.1
3,657,892	-		GFF3610	0.38	-0.8
3,657,892	-		GFF3610	0.38	+0.5
3,657,975	-		GFF3610	0.49	+0.5
3,657,987	-		GFF3610	0.51	+1.0
3,658,250	+		GFF3610	0.87	+0.0
3,658,266	-		GFF3610	0.89	-0.1
3,658,310	+				+0.2
3,658,310	+				-1.3
3,658,317	-				+0.1
3,658,323	-				-2.1
3,658,334	+				-1.8
3,658,334	+				-0.4
3,658,334	+				+1.2
3,658,334	+				-0.1
3,658,334	+				+1.2
3,658,334	+				-1.1
3,658,334	+				-0.4
3,658,334	+				+0.0
3,658,334	+				+0.7
3,658,334	+				-1.8
3,658,334	+				-0.3
3,658,334	+				-1.8
3,658,334	+				-0.8
3,658,334	+				-0.6
3,658,334	+				-0.5
3,658,340	+				+0.1
3,658,342	+				-1.1
3,658,342	-				+0.2
3,658,342	-				-2.1
3,658,342	-				-0.5
3,658,342	-				+0.6
3,658,342	-				-0.5
3,658,342	-				+0.2
3,658,342	-				-2.0
3,658,342	-				-0.6
3,658,342	-				-0.8
3,658,367	+				-2.1
3,658,375	+				-2.5
3,658,390	+				+0.7
3,658,393	+				-0.7
3,658,430	+				-2.3
3,658,438	+				-0.7
3,658,445	+				-0.4
3,658,446	-				-2.0
3,658,448	+				-1.9
3,658,448	+				-1.6
3,658,456	-				-1.1
3,658,456	-				-1.7
3,658,456	-				+1.4
3,658,456	-				+0.7
3,658,456	-				-2.1
3,658,456	-				-1.0
3,658,470	+				-0.1
3,658,471	+				+0.5
3,658,478	-				-0.6
3,658,478	-				+0.5
3,658,478	-				+0.1
3,658,486	-				+1.3
3,658,497	+				-1.3
3,658,503	-				-1.9
3,658,538	+		GFF3611	0.10	-1.3
3,658,538	+		GFF3611	0.10	-0.4
3,658,538	+		GFF3611	0.10	-1.6
3,658,538	+		GFF3611	0.10	-1.0
3,658,546	-		GFF3611	0.10	-0.7
3,658,546	-		GFF3611	0.10	-0.5
3,658,546	-		GFF3611	0.10	-2.1
3,658,546	-		GFF3611	0.10	-0.0
3,658,562	-		GFF3611	0.11	-2.1
3,658,586	+		GFF3611	0.12	-0.6
3,658,589	+		GFF3611	0.13	-0.5
3,658,589	+		GFF3611	0.13	-0.5
3,658,595	+		GFF3611	0.13	-1.3
3,658,597	-		GFF3611	0.13	-1.0
3,658,597	-		GFF3611	0.13	+0.4
3,658,597	-		GFF3611	0.13	+0.2
3,658,597	-		GFF3611	0.13	-1.8
3,658,597	-		GFF3611	0.13	+0.2
3,658,603	-		GFF3611	0.13	-0.8
3,658,603	-		GFF3611	0.13	-0.7
3,658,617	-		GFF3611	0.14	-1.6
3,658,640	+		GFF3611	0.15	-2.0
3,658,642	+		GFF3611	0.15	+1.3
3,658,648	+		GFF3611	0.15	-2.6
3,658,650	-		GFF3611	0.16	-0.3
3,658,657	+		GFF3611	0.16	+0.2
3,658,657	+		GFF3611	0.16	-1.4
3,658,657	-		GFF3611	0.16	-0.3
3,658,664	+		GFF3611	0.16	+0.4
3,658,664	+		GFF3611	0.16	-0.4
3,658,664	+		GFF3611	0.16	+0.8
3,658,665	-		GFF3611	0.16	-0.9
3,658,672	-		GFF3611	0.17	+0.9
3,658,675	-		GFF3611	0.17	+0.5
3,658,702	-		GFF3611	0.18	+0.9
3,658,702	-		GFF3611	0.18	-0.1
3,658,727	-		GFF3611	0.19	-1.1
3,658,758	+		GFF3611	0.21	-1.4
3,658,766	-		GFF3611	0.21	-1.8
3,658,778	+		GFF3611	0.22	-0.1
3,658,786	-		GFF3611	0.22	+0.3
3,658,792	-		GFF3611	0.23	-1.9
3,658,837	+		GFF3611	0.25	+0.3
3,658,853	-		GFF3611	0.26	-1.6
3,658,874	+		GFF3611	0.27	+0.5
3,658,880	+		GFF3611	0.27	-0.3
3,658,882	-		GFF3611	0.27	-0.4
3,658,888	-		GFF3611	0.27	+0.4
3,658,888	-		GFF3611	0.27	-0.1
3,658,888	-		GFF3611	0.27	+0.3
3,658,892	-		GFF3611	0.28	+0.7
3,658,905	+		GFF3611	0.28	-2.2
3,658,911	+		GFF3611	0.29	-0.6
3,658,918	+		GFF3611	0.29	+0.3
3,658,918	-		GFF3611	0.29	+1.1
3,658,920	+		GFF3611	0.29	-1.4
3,658,928	-		GFF3611	0.29	-0.2
3,658,946	+		GFF3611	0.30	-2.3
3,658,966	-		GFF3611	0.31	+0.7
3,658,971	+		GFF3611	0.32	-0.8
3,658,981	+		GFF3611	0.32	-1.5
3,658,983	-		GFF3611	0.32	+1.2
3,658,987	+		GFF3611	0.32	-1.4
3,658,995	-		GFF3611	0.33	+0.9
3,658,995	-		GFF3611	0.33	-1.7
3,658,995	-		GFF3611	0.33	-1.5
3,659,010	-		GFF3611	0.33	-0.1
3,659,035	+		GFF3611	0.35	+0.2
3,659,050	-		GFF3611	0.35	+0.3
3,659,054	+		GFF3611	0.36	+0.7
3,659,059	+		GFF3611	0.36	+0.8
3,659,059	+		GFF3611	0.36	+0.4
3,659,059	+		GFF3611	0.36	+0.7
3,659,059	+		GFF3611	0.36	-0.7
3,659,062	-		GFF3611	0.36	-1.1
3,659,067	-		GFF3611	0.36	+0.6
3,659,067	-		GFF3611	0.36	+0.2
3,659,067	-		GFF3611	0.36	-0.3
3,659,089	-		GFF3611	0.37	-0.5
3,659,091	+		GFF3611	0.38	-0.4
3,659,140	+		GFF3611	0.40	-1.2
3,659,140	+		GFF3611	0.40	+1.1
3,659,147	+		GFF3611	0.40	-0.8
3,659,148	-		GFF3611	0.40	-0.2
3,659,162	+		GFF3611	0.41	+1.1
3,659,165	-		GFF3611	0.41	+1.9
3,659,167	+		GFF3611	0.41	-0.3
3,659,167	+		GFF3611	0.41	+1.2
3,659,167	+		GFF3611	0.41	-1.3
3,659,172	+		GFF3611	0.42	+0.1
3,659,172	+		GFF3611	0.42	-0.5
3,659,172	+		GFF3611	0.42	-2.4
3,659,172	+		GFF3611	0.42	+0.4
3,659,172	+		GFF3611	0.42	+0.2
3,659,172	+		GFF3611	0.42	+0.4
3,659,172	+		GFF3611	0.42	+0.6
3,659,172	+		GFF3611	0.42	-1.3
3,659,175	-		GFF3611	0.42	+0.1
3,659,180	-		GFF3611	0.42	-0.3
3,659,180	-		GFF3611	0.42	-0.6
3,659,180	-		GFF3611	0.42	+0.8
3,659,180	-		GFF3611	0.42	-2.2
3,659,180	-		GFF3611	0.42	+0.8
3,659,180	-		GFF3611	0.42	+0.0
3,659,180	-		GFF3611	0.42	-1.8
3,659,180	-		GFF3611	0.42	+0.0
3,659,186	-		GFF3611	0.42	-0.4
3,659,207	-		GFF3611	0.43	-1.8
3,659,210	+		GFF3611	0.43	-1.7
3,659,216	+		GFF3611	0.44	+0.2
3,659,216	+		GFF3611	0.44	-1.5
3,659,216	+		GFF3611	0.44	+0.6
3,659,224	-		GFF3611	0.44	-1.5
3,659,224	-		GFF3611	0.44	-1.7
3,659,224	-		GFF3611	0.44	+0.7
3,659,239	-		GFF3611	0.45	+0.2
3,659,239	-		GFF3611	0.45	-0.9
3,659,254	+		GFF3611	0.46	-1.8
3,659,254	+		GFF3611	0.46	+0.0
3,659,254	+		GFF3611	0.46	-0.3
3,659,254	+		GFF3611	0.46	-0.2
3,659,254	+		GFF3611	0.46	+0.8
3,659,262	-		GFF3611	0.46	+1.0
3,659,262	-		GFF3611	0.46	-1.7
3,659,262	-		GFF3611	0.46	-1.2
3,659,262	-		GFF3611	0.46	-1.6
3,659,262	-		GFF3611	0.46	+0.1
3,659,265	+		GFF3611	0.46	-1.8
3,659,305	-		GFF3611	0.48	-1.3
3,659,400	+		GFF3611	0.53	-2.1
3,659,400	-		GFF3611	0.53	-0.3
3,659,418	-		GFF3611	0.54	+0.9
3,659,429	-		GFF3611	0.54	+0.2
3,659,449	-		GFF3611	0.55	-2.5
3,659,459	+		GFF3611	0.56	-1.1
3,659,466	+		GFF3611	0.56	-1.3
3,659,467	-		GFF3611	0.56	+0.3
3,659,470	+		GFF3611	0.56	+0.5
3,659,480	+		GFF3611	0.57	-0.5
3,659,503	+		GFF3611	0.58	-1.3
3,659,544	+		GFF3611	0.60	-0.6
3,659,549	+		GFF3611	0.60	-0.7
3,659,549	+		GFF3611	0.60	+0.4
3,659,554	+		GFF3611	0.61	-1.9
3,659,557	-		GFF3611	0.61	+0.3
3,659,574	+		GFF3611	0.62	+0.2
3,659,584	+		GFF3611	0.62	-0.4
3,659,592	-		GFF3611	0.62	+0.0
3,659,597	-		GFF3611	0.63	-0.9
3,659,609	+		GFF3611	0.63	+0.2
3,659,609	+		GFF3611	0.63	+0.1
3,659,617	-		GFF3611	0.64	-0.5
3,659,617	-		GFF3611	0.64	-2.6
3,659,617	-		GFF3611	0.64	-0.4
3,659,632	-		GFF3611	0.64	-0.7
3,659,635	+		GFF3611	0.65	+0.7
3,659,635	+		GFF3611	0.65	-2.3
3,659,643	-		GFF3611	0.65	-1.3
3,659,643	-		GFF3611	0.65	-1.5
3,659,668	+		GFF3611	0.66	-0.1
3,659,676	-		GFF3611	0.67	-0.5
3,659,676	-		GFF3611	0.67	-0.6
3,659,692	-		GFF3611	0.67	+0.7
3,659,701	+		GFF3611	0.68	-1.1
3,659,701	-		GFF3611	0.68	+2.5
3,659,709	-		GFF3611	0.68	-0.5
3,659,709	-		GFF3611	0.68	-0.8
3,659,715	+		GFF3611	0.69	-0.6
3,659,742	+		GFF3611	0.70	-1.0
3,659,750	-		GFF3611	0.70	+1.2
3,659,759	+		GFF3611	0.71	-1.4
3,659,761	+		GFF3611	0.71	+0.6
3,659,761	+		GFF3611	0.71	-0.8
3,659,769	-		GFF3611	0.71	-0.2
3,659,771	+		GFF3611	0.71	-2.1
3,659,779	-		GFF3611	0.72	-0.2
3,659,779	-		GFF3611	0.72	-0.1
3,659,779	-		GFF3611	0.72	+0.2
3,659,779	-		GFF3611	0.72	+1.3
3,659,800	+		GFF3611	0.73	-1.5
3,659,806	+		GFF3611	0.73	-0.0
3,659,808	-		GFF3611	0.73	-0.2
3,659,808	-		GFF3611	0.73	-1.6
3,659,814	+		GFF3611	0.73	-0.3
3,659,837	-		GFF3611	0.75	+0.5
3,659,837	-		GFF3611	0.75	-0.5
3,659,853	+		GFF3611	0.75	+0.4
3,659,855	-		GFF3611	0.75	-2.1
3,659,856	-		GFF3611	0.76	-0.1
3,659,865	+		GFF3611	0.76	-1.1
3,659,865	+		GFF3611	0.76	-0.6
3,659,865	+		GFF3611	0.76	-0.5
3,659,871	+		GFF3611	0.76	-0.5
3,659,879	-		GFF3611	0.77	-0.8
3,659,879	-		GFF3611	0.77	-1.3
3,659,946	-		GFF3611	0.80	+0.5
3,659,954	+		GFF3611	0.80	-0.7
3,659,962	-		GFF3611	0.81	+0.4
3,659,981	+		GFF3611	0.82	+0.2
3,659,981	+		GFF3611	0.82	-0.5
3,660,063	-		GFF3611	0.86	-3.0
3,660,091	-		GFF3611	0.87	-0.9
3,660,096	-		GFF3611	0.87	-0.4
3,660,096	-		GFF3611	0.87	-0.1
3,660,107	-		GFF3611	0.88	-0.1
3,660,121	-		GFF3611	0.89	+0.1
3,660,137	+		GFF3611	0.89	+0.3
3,660,147	+				-1.3
3,660,178	-				-0.6
3,660,192	-				+0.6
3,660,197	-				+0.5
3,660,197	-				+0.2
3,660,197	-				+0.4
3,660,254	+				-1.3
3,660,254	+				-1.8
3,660,262	-				-0.5
3,660,269	+				+1.1
3,660,269	+				-0.8
3,660,269	+				-1.6
3,660,272	+				-1.8
3,660,274	+				-1.0
3,660,274	+				-1.7
3,660,274	+				-0.7
3,660,274	+				-0.7
3,660,274	+				-0.1
3,660,277	-				-1.4
3,660,277	-				+0.0
3,660,277	-				-2.6
3,660,277	-				+0.3
3,660,277	-				-1.1
3,660,277	-				-1.3
3,660,277	-				-1.0
3,660,282	-				-0.1
3,660,282	-				-1.4
3,660,282	-				+0.3
3,660,282	-				-2.3
3,660,282	-				-1.1
3,660,299	-				-0.7
3,660,311	-				+0.6
3,660,321	+				-0.4
3,660,352	+				-2.9
3,660,360	-				-1.1
3,660,360	-				+0.3
3,660,360	-				+0.8
3,660,360	-				-0.2
3,660,360	-				+0.6
3,660,360	-				+0.1
3,660,379	-				+0.3
3,660,381	-				+0.8
3,660,391	-				-0.3
3,660,394	-				+0.0
3,660,406	+				-0.4
3,660,408	+				+0.7
3,660,409	-				+0.7
3,660,417	-				+1.5
3,660,419	-				+0.4
3,660,428	+				-1.0
3,660,454	+				+0.3
3,660,456	+				+0.3
3,660,466	+				+0.0
3,660,466	+				+0.2
3,660,469	-				-0.8
3,660,474	-				-1.8
3,660,478	+				+0.3
3,660,478	+				+0.8
3,660,486	-				-0.5
3,660,577	+		GFF3612	0.10	-1.4
3,660,848	+		GFF3612	0.37	-0.2
3,660,849	+		GFF3612	0.37	+0.6
3,660,900	+		GFF3612	0.42	+0.2
3,660,905	+		GFF3612	0.43	+0.7
3,660,905	+		GFF3612	0.43	-0.4
3,660,905	+		GFF3612	0.43	-0.0
3,660,905	+		GFF3612	0.43	+0.3
3,660,907	+		GFF3612	0.43	-0.7
3,660,907	+		GFF3612	0.43	+0.2
3,660,907	+		GFF3612	0.43	-0.5
3,660,907	+		GFF3612	0.43	-1.3
3,660,907	+		GFF3612	0.43	+1.6
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