Strain Fitness in Sphingobium sp. HT1-2 around GFF357

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF356 and GFF357 are separated by 131 nucleotidesGFF357 and GFF358 are separated by 83 nucleotidesGFF358 and GFF359 are separated by 12 nucleotides GFF356 - Sulfur carrier protein ThiS / Thiazole synthase (EC 2.8.1.10), at 348,163 to 349,164 GFF356 GFF357 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 349,296 to 349,736 GFF357 GFF358 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 349,820 to 350,308 GFF358 GFF359 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 350,321 to 351,673 GFF359 Position (kb) 349 350Strain fitness (log2 ratio) -2 -1 0 1 2at 348.310 kb on + strand, within GFF356at 348.310 kb on + strand, within GFF356at 348.316 kb on - strand, within GFF356at 348.326 kb on + strand, within GFF356at 348.329 kb on - strand, within GFF356at 348.329 kb on - strand, within GFF356at 348.331 kb on + strand, within GFF356at 348.331 kb on + strand, within GFF356at 348.337 kb on + strand, within GFF356at 348.339 kb on - strand, within GFF356at 348.339 kb on - strand, within GFF356at 348.339 kb on - strand, within GFF356at 348.339 kb on - strand, within GFF356at 348.339 kb on - strand, within GFF356at 348.339 kb on - strand, within GFF356at 348.339 kb on - strand, within GFF356at 348.339 kb on - strand, within GFF356at 348.362 kb on - strand, within GFF356at 348.365 kb on + strand, within GFF356at 348.367 kb on + strand, within GFF356at 348.367 kb on + strand, within GFF356at 348.367 kb on + strand, within GFF356at 348.373 kb on - strand, within GFF356at 348.375 kb on - strand, within GFF356at 348.380 kb on - strand, within GFF356at 348.382 kb on + strand, within GFF356at 348.385 kb on - strand, within GFF356at 348.385 kb on - strand, within GFF356at 348.396 kb on + strand, within GFF356at 348.396 kb on + strand, within GFF356at 348.396 kb on + strand, within GFF356at 348.396 kb on + strand, within GFF356at 348.396 kb on + strand, within GFF356at 348.404 kb on - strand, within GFF356at 348.404 kb on - strand, within GFF356at 348.404 kb on - strand, within GFF356at 348.404 kb on - strand, within GFF356at 348.404 kb on - strand, within GFF356at 348.428 kb on + strand, within GFF356at 348.436 kb on - strand, within GFF356at 348.442 kb on + strand, within GFF356at 348.442 kb on + strand, within GFF356at 348.442 kb on + strand, within GFF356at 348.447 kb on + strand, within GFF356at 348.447 kb on + strand, within GFF356at 348.447 kb on + strand, within GFF356at 348.447 kb on + strand, within GFF356at 348.447 kb on + strand, within GFF356at 348.447 kb on + strand, within GFF356at 348.447 kb on + strand, within GFF356at 348.450 kb on - strand, within GFF356at 348.450 kb on - strand, within GFF356at 348.450 kb on - strand, within GFF356at 348.455 kb on - strand, within GFF356at 348.455 kb on - strand, within GFF356at 348.455 kb on - strand, within GFF356at 348.455 kb on - strand, within GFF356at 348.455 kb on - strand, within GFF356at 348.455 kb on - strand, within GFF356at 348.478 kb on + strand, within GFF356at 348.478 kb on + strand, within GFF356at 348.486 kb on - strand, within GFF356at 348.505 kb on - strand, within GFF356at 348.505 kb on - strand, within GFF356at 348.530 kb on + strand, within GFF356at 348.533 kb on + strand, within GFF356at 348.546 kb on + strand, within GFF356at 348.551 kb on + strand, within GFF356at 348.554 kb on - strand, within GFF356at 348.557 kb on + strand, within GFF356at 348.557 kb on + strand, within GFF356at 348.557 kb on + strand, within GFF356at 348.557 kb on + strand, within GFF356at 348.557 kb on + strand, within GFF356at 348.565 kb on - strand, within GFF356at 348.565 kb on - strand, within GFF356at 348.565 kb on - strand, within GFF356at 348.568 kb on + strand, within GFF356at 348.570 kb on - strand, within GFF356at 348.570 kb on - strand, within GFF356at 348.587 kb on + strand, within GFF356at 348.595 kb on - strand, within GFF356at 348.595 kb on - strand, within GFF356at 348.597 kb on + strand, within GFF356at 348.603 kb on + strand, within GFF356at 348.603 kb on + strand, within GFF356at 348.610 kb on - strand, within GFF356at 348.611 kb on - strand, within GFF356at 348.620 kb on + strand, within GFF356at 348.620 kb on + strand, within GFF356at 348.630 kb on - strand, within GFF356at 348.630 kb on - strand, within GFF356at 348.638 kb on - strand, within GFF356at 348.638 kb on - strand, within GFF356at 348.645 kb on + strand, within GFF356at 348.645 kb on + strand, within GFF356at 348.645 kb on + strand, within GFF356at 348.648 kb on - strand, within GFF356at 348.653 kb on - strand, within GFF356at 348.653 kb on - strand, within GFF356at 348.653 kb on - strand, within GFF356at 348.653 kb on - strand, within GFF356at 348.653 kb on - strand, within GFF356at 348.653 kb on - strand, within GFF356at 348.653 kb on - strand, within GFF356at 348.653 kb on - strand, within GFF356at 348.680 kb on - strand, within GFF356at 348.691 kb on - strand, within GFF356at 348.716 kb on + strand, within GFF356at 348.716 kb on + strand, within GFF356at 348.716 kb on + strand, within GFF356at 348.716 kb on + strand, within GFF356at 348.716 kb on + strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.724 kb on - strand, within GFF356at 348.736 kb on - strand, within GFF356at 348.749 kb on + strand, within GFF356at 348.756 kb on - strand, within GFF356at 348.786 kb on + strand, within GFF356at 348.786 kb on + strand, within GFF356at 348.794 kb on - strand, within GFF356at 348.794 kb on - strand, within GFF356at 348.801 kb on + strand, within GFF356at 348.801 kb on + strand, within GFF356at 348.801 kb on + strand, within GFF356at 348.809 kb on + strand, within GFF356at 348.817 kb on - strand, within GFF356at 348.835 kb on - strand, within GFF356at 348.840 kb on - strand, within GFF356at 348.850 kb on - strand, within GFF356at 348.852 kb on + strand, within GFF356at 348.885 kb on - strand, within GFF356at 348.894 kb on + strand, within GFF356at 348.901 kb on + strand, within GFF356at 348.909 kb on - strand, within GFF356at 348.910 kb on - strand, within GFF356at 348.910 kb on - strand, within GFF356at 348.910 kb on - strand, within GFF356at 348.910 kb on - strand, within GFF356at 348.910 kb on - strand, within GFF356at 348.910 kb on - strand, within GFF356at 348.914 kb on + strand, within GFF356at 348.920 kb on - strand, within GFF356at 348.926 kb on + strand, within GFF356at 348.933 kb on - strand, within GFF356at 348.946 kb on - strand, within GFF356at 348.953 kb on - strand, within GFF356at 348.971 kb on + strand, within GFF356at 348.979 kb on - strand, within GFF356at 348.979 kb on - strand, within GFF356at 348.988 kb on + strand, within GFF356at 348.988 kb on + strand, within GFF356at 348.996 kb on - strand, within GFF356at 348.997 kb on - strand, within GFF356at 349.006 kb on + strand, within GFF356at 349.006 kb on + strand, within GFF356at 349.006 kb on + strand, within GFF356at 349.011 kb on + strand, within GFF356at 349.014 kb on - strand, within GFF356at 349.014 kb on - strand, within GFF356at 349.019 kb on - strand, within GFF356at 349.021 kb on + strand, within GFF356at 349.021 kb on + strand, within GFF356at 349.021 kb on - strand, within GFF356at 349.037 kb on - strand, within GFF356at 349.039 kb on + strand, within GFF356at 349.046 kb on + strand, within GFF356at 349.077 kb on - strandat 349.077 kb on - strandat 349.091 kb on + strandat 349.095 kb on + strandat 349.095 kb on + strandat 349.095 kb on + strandat 349.095 kb on + strandat 349.095 kb on + strandat 349.095 kb on + strandat 349.095 kb on + strandat 349.096 kb on + strandat 349.096 kb on + strandat 349.096 kb on + strandat 349.096 kb on + strandat 349.096 kb on + strandat 349.096 kb on + strandat 349.098 kb on - strandat 349.103 kb on - strandat 349.103 kb on - strandat 349.103 kb on - strandat 349.103 kb on - strandat 349.103 kb on - strandat 349.103 kb on - strandat 349.103 kb on - strandat 349.104 kb on - strandat 349.104 kb on - strandat 349.113 kb on - strandat 349.135 kb on - strandat 349.146 kb on - strandat 349.166 kb on + strandat 349.166 kb on + strandat 349.166 kb on + strandat 349.166 kb on + strandat 349.174 kb on - strandat 349.174 kb on - strandat 349.174 kb on - strandat 349.217 kb on + strandat 349.217 kb on + strandat 349.218 kb on + strandat 349.225 kb on - strandat 349.225 kb on - strandat 349.225 kb on - strandat 349.241 kb on - strandat 349.270 kb on - strandat 349.270 kb on - strandat 349.271 kb on + strandat 349.271 kb on + strandat 349.271 kb on + strandat 349.275 kb on - strandat 349.275 kb on - strandat 349.279 kb on - strandat 349.279 kb on - strandat 349.279 kb on - strandat 349.338 kb on - strandat 349.608 kb on - strand, within GFF357at 349.678 kb on - strand, within GFF357at 349.722 kb on + strandat 349.730 kb on - strandat 349.730 kb on - strandat 349.730 kb on - strandat 349.731 kb on + strandat 349.731 kb on + strandat 349.731 kb on - strandat 349.733 kb on + strandat 349.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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348,310 + GFF356 0.15 +0.4
348,310 + GFF356 0.15 +1.8
348,316 - GFF356 0.15 -0.3
348,326 + GFF356 0.16 -1.2
348,329 - GFF356 0.17 -0.5
348,329 - GFF356 0.17 +1.0
348,331 + GFF356 0.17 +1.5
348,331 + GFF356 0.17 -1.3
348,337 + GFF356 0.17 -0.0
348,339 - GFF356 0.18 -0.0
348,339 - GFF356 0.18 -1.3
348,339 - GFF356 0.18 +0.9
348,339 - GFF356 0.18 +0.5
348,339 - GFF356 0.18 -0.7
348,339 - GFF356 0.18 -0.6
348,339 - GFF356 0.18 -1.1
348,339 - GFF356 0.18 -0.6
348,362 - GFF356 0.20 +0.2
348,365 + GFF356 0.20 +0.2
348,367 + GFF356 0.20 -1.9
348,367 + GFF356 0.20 -0.5
348,367 + GFF356 0.20 -2.4
348,373 - GFF356 0.21 -1.7
348,375 - GFF356 0.21 -1.2
348,380 - GFF356 0.22 +0.9
348,382 + GFF356 0.22 +0.4
348,385 - GFF356 0.22 -1.9
348,385 - GFF356 0.22 -0.3
348,396 + GFF356 0.23 +1.1
348,396 + GFF356 0.23 +1.0
348,396 + GFF356 0.23 -0.5
348,396 + GFF356 0.23 +0.9
348,396 + GFF356 0.23 +0.0
348,404 - GFF356 0.24 +0.7
348,404 - GFF356 0.24 +0.7
348,404 - GFF356 0.24 -0.2
348,404 - GFF356 0.24 -0.7
348,404 - GFF356 0.24 +1.3
348,428 + GFF356 0.26 -0.4
348,436 - GFF356 0.27 +0.8
348,442 + GFF356 0.28 -2.1
348,442 + GFF356 0.28 -1.5
348,442 + GFF356 0.28 +0.8
348,447 + GFF356 0.28 +0.7
348,447 + GFF356 0.28 +0.8
348,447 + GFF356 0.28 -1.2
348,447 + GFF356 0.28 -0.3
348,447 + GFF356 0.28 +0.2
348,447 + GFF356 0.28 +1.3
348,447 + GFF356 0.28 +0.4
348,450 - GFF356 0.29 -0.3
348,450 - GFF356 0.29 +0.4
348,450 - GFF356 0.29 +0.6
348,455 - GFF356 0.29 +0.4
348,455 - GFF356 0.29 -0.0
348,455 - GFF356 0.29 -0.2
348,455 - GFF356 0.29 -0.0
348,455 - GFF356 0.29 +1.0
348,455 - GFF356 0.29 +1.2
348,478 + GFF356 0.31 -0.4
348,478 + GFF356 0.31 +0.6
348,486 - GFF356 0.32 -1.1
348,505 - GFF356 0.34 -1.2
348,505 - GFF356 0.34 -1.9
348,530 + GFF356 0.37 +0.9
348,533 + GFF356 0.37 -0.5
348,546 + GFF356 0.38 -1.3
348,551 + GFF356 0.39 -0.0
348,554 - GFF356 0.39 -0.6
348,557 + GFF356 0.39 -1.1
348,557 + GFF356 0.39 -0.2
348,557 + GFF356 0.39 -0.0
348,557 + GFF356 0.39 -1.2
348,557 + GFF356 0.39 -0.7
348,565 - GFF356 0.40 -0.0
348,565 - GFF356 0.40 -0.3
348,565 - GFF356 0.40 -0.5
348,568 + GFF356 0.40 +0.5
348,570 - GFF356 0.41 -2.3
348,570 - GFF356 0.41 +1.2
348,587 + GFF356 0.42 -0.4
348,595 - GFF356 0.43 +0.7
348,595 - GFF356 0.43 +0.1
348,597 + GFF356 0.43 +0.3
348,603 + GFF356 0.44 -0.4
348,603 + GFF356 0.44 -0.4
348,610 - GFF356 0.45 -0.0
348,611 - GFF356 0.45 -1.4
348,620 + GFF356 0.46 -1.7
348,620 + GFF356 0.46 +0.1
348,630 - GFF356 0.47 +0.7
348,630 - GFF356 0.47 +0.9
348,638 - GFF356 0.47 -1.3
348,638 - GFF356 0.47 -1.2
348,645 + GFF356 0.48 -1.4
348,645 + GFF356 0.48 -0.5
348,645 + GFF356 0.48 -1.7
348,648 - GFF356 0.48 -1.8
348,653 - GFF356 0.49 -1.3
348,653 - GFF356 0.49 -2.1
348,653 - GFF356 0.49 +0.8
348,653 - GFF356 0.49 -0.8
348,653 - GFF356 0.49 +0.3
348,653 - GFF356 0.49 -0.3
348,653 - GFF356 0.49 -1.6
348,653 - GFF356 0.49 -1.2
348,680 - GFF356 0.52 +0.4
348,691 - GFF356 0.53 -1.6
348,716 + GFF356 0.55 -1.8
348,716 + GFF356 0.55 -0.9
348,716 + GFF356 0.55 +0.7
348,716 + GFF356 0.55 +0.4
348,716 + GFF356 0.55 -0.5
348,724 - GFF356 0.56 +0.2
348,724 - GFF356 0.56 +0.7
348,724 - GFF356 0.56 +0.5
348,724 - GFF356 0.56 +0.7
348,724 - GFF356 0.56 -0.8
348,724 - GFF356 0.56 -0.8
348,724 - GFF356 0.56 -0.9
348,724 - GFF356 0.56 +1.4
348,724 - GFF356 0.56 +1.4
348,724 - GFF356 0.56 -1.4
348,724 - GFF356 0.56 -0.5
348,736 - GFF356 0.57 +0.7
348,749 + GFF356 0.58 -2.2
348,756 - GFF356 0.59 -1.5
348,786 + GFF356 0.62 -0.6
348,786 + GFF356 0.62 -1.6
348,794 - GFF356 0.63 +0.2
348,794 - GFF356 0.63 -0.0
348,801 + GFF356 0.64 +0.5
348,801 + GFF356 0.64 +1.4
348,801 + GFF356 0.64 -0.1
348,809 + GFF356 0.64 -0.1
348,817 - GFF356 0.65 -0.6
348,835 - GFF356 0.67 +0.3
348,840 - GFF356 0.68 +0.1
348,850 - GFF356 0.69 -1.9
348,852 + GFF356 0.69 -1.7
348,885 - GFF356 0.72 -1.2
348,894 + GFF356 0.73 +0.2
348,901 + GFF356 0.74 +0.6
348,909 - GFF356 0.74 -0.5
348,910 - GFF356 0.75 +1.0
348,910 - GFF356 0.75 +0.8
348,910 - GFF356 0.75 +0.6
348,910 - GFF356 0.75 +1.4
348,910 - GFF356 0.75 -1.1
348,910 - GFF356 0.75 -1.1
348,914 + GFF356 0.75 -0.2
348,920 - GFF356 0.76 +2.2
348,926 + GFF356 0.76 +0.2
348,933 - GFF356 0.77 -0.2
348,946 - GFF356 0.78 -1.2
348,953 - GFF356 0.79 +0.1
348,971 + GFF356 0.81 -0.1
348,979 - GFF356 0.81 -1.0
348,979 - GFF356 0.81 -0.4
348,988 + GFF356 0.82 -0.9
348,988 + GFF356 0.82 +0.1
348,996 - GFF356 0.83 +0.3
348,997 - GFF356 0.83 +0.1
349,006 + GFF356 0.84 +1.0
349,006 + GFF356 0.84 +0.2
349,006 + GFF356 0.84 +0.1
349,011 + GFF356 0.85 -0.3
349,014 - GFF356 0.85 -0.9
349,014 - GFF356 0.85 -0.5
349,019 - GFF356 0.85 -1.3
349,021 + GFF356 0.86 +0.4
349,021 + GFF356 0.86 +0.4
349,021 - GFF356 0.86 -0.1
349,037 - GFF356 0.87 +0.1
349,039 + GFF356 0.87 +0.2
349,046 + GFF356 0.88 -1.6
349,077 - +0.4
349,077 - +1.0
349,091 + -0.3
349,095 + -0.1
349,095 + -0.3
349,095 + +0.8
349,095 + +0.1
349,095 + +0.7
349,095 + -1.8
349,095 + +0.5
349,096 + -1.4
349,096 + -1.2
349,096 + -0.5
349,096 + -0.7
349,096 + +0.1
349,096 + +0.4
349,098 - +0.9
349,103 - +0.9
349,103 - +1.0
349,103 - -1.2
349,103 - -1.5
349,103 - -1.1
349,103 - -1.1
349,103 - -1.1
349,104 - +2.2
349,104 - +0.1
349,113 - -0.3
349,135 - -0.3
349,146 - -1.9
349,166 + -1.0
349,166 + +0.7
349,166 + -1.9
349,166 + +0.5
349,174 - -1.8
349,174 - -1.9
349,174 - +1.2
349,217 + -0.9
349,217 + +0.2
349,218 + +0.3
349,225 - -0.5
349,225 - +0.1
349,225 - -1.1
349,241 - -1.1
349,270 - -0.9
349,270 - -0.2
349,271 + -1.6
349,271 + -0.8
349,271 + +0.8
349,275 - +0.1
349,275 - -1.3
349,279 - -0.1
349,279 - -0.2
349,279 - -1.5
349,338 - -0.2
349,608 - GFF357 0.71 -0.7
349,678 - GFF357 0.87 -1.1
349,722 + +0.4
349,730 - -1.2
349,730 - +0.2
349,730 - +0.1
349,731 + -0.0
349,731 + +0.4
349,731 - -1.1
349,733 + +1.2
349,748 - -0.5

Or see this region's nucleotide sequence