Strain Fitness in Sphingobium sp. HT1-2 around GFF3539

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,586,260	+		GFF3537	0.83	-1.4
3,586,268	-		GFF3537	0.83	-1.2
3,586,268	-		GFF3537	0.83	-1.0
3,586,294	+		GFF3537	0.86	-2.6
3,586,294	+		GFF3537	0.86	-1.9
3,586,294	+		GFF3537	0.86	-0.7
3,586,307	-		GFF3537	0.87	-0.7
3,586,320	+		GFF3537	0.89	-2.4
3,586,355	+				-2.7
3,586,363	-				-0.5
3,586,363	-				-2.4
3,586,363	-				-1.5
3,586,363	-				-2.9
3,586,432	+				-2.5
3,586,440	-				-1.7
3,586,463	+				-1.2
3,586,481	+				-1.5
3,586,481	+				-0.2
3,586,488	+				-3.4
3,586,517	-		GFF3538	0.11	-1.8
3,586,535	-		GFF3538	0.14	-2.1
3,586,550	+		GFF3538	0.15	-1.2
3,586,557	+		GFF3538	0.16	-0.6
3,586,604	+		GFF3538	0.22	-1.4
3,586,609	+		GFF3538	0.23	-3.5
3,586,617	-		GFF3538	0.24	-3.9
3,586,626	+		GFF3538	0.25	+0.1
3,586,626	+		GFF3538	0.25	-0.8
3,586,634	-		GFF3538	0.26	-3.2
3,586,634	-		GFF3538	0.26	-2.1
3,586,639	-		GFF3538	0.27	-1.4
3,586,667	+		GFF3538	0.30	-2.7
3,586,670	-		GFF3538	0.31	-0.5
3,586,675	-		GFF3538	0.31	-0.5
3,586,701	+		GFF3538	0.34	-1.8
3,586,711	-		GFF3538	0.36	-2.4
3,586,718	-		GFF3538	0.37	-2.0
3,586,845	+		GFF3538	0.53	-0.9
3,586,845	+		GFF3538	0.53	-1.2
3,586,845	+		GFF3538	0.53	-1.9
3,586,845	+		GFF3538	0.53	-2.2
3,586,848	-		GFF3538	0.53	-1.9
3,586,853	-		GFF3538	0.54	-1.5
3,586,853	-		GFF3538	0.54	-2.7
3,586,889	+		GFF3538	0.58	-2.1
3,586,896	-		GFF3538	0.59	-1.9
3,586,903	+		GFF3538	0.60	-1.8
3,586,913	+		GFF3538	0.61	-2.0
3,586,913	+		GFF3538	0.61	-2.9
3,586,913	+		GFF3538	0.61	-2.1
3,586,921	-		GFF3538	0.62	-2.1
3,586,921	-		GFF3538	0.62	-1.4
3,586,922	-		GFF3538	0.62	-2.8
3,586,943	-		GFF3538	0.65	-1.6
3,586,943	-		GFF3538	0.65	-1.5
3,586,946	+		GFF3538	0.65	-1.9
3,586,954	-		GFF3538	0.66	-1.3
3,586,980	+		GFF3538	0.70	-1.9
3,586,980	+		GFF3538	0.70	-2.4
3,586,999	+		GFF3538	0.72	-1.0
3,587,007	-		GFF3538	0.73	-1.9
3,587,038	+		GFF3538	0.77	-2.5
3,587,038	+		GFF3538	0.77	-1.0
3,587,038	+		GFF3538	0.77	-1.1
3,587,038	+		GFF3538	0.77	-1.2
3,587,038	+		GFF3538	0.77	-2.3
3,587,038	+		GFF3538	0.77	-3.3
3,587,038	+		GFF3538	0.77	-0.3
3,587,038	+		GFF3538	0.77	-2.3
3,587,038	+		GFF3538	0.77	+0.1
3,587,038	+		GFF3538	0.77	-2.2
3,587,038	+		GFF3538	0.77	-1.4
3,587,038	+		GFF3538	0.77	-1.6
3,587,038	+		GFF3538	0.77	-1.9
3,587,038	+		GFF3538	0.77	-2.6
3,587,038	+		GFF3538	0.77	-1.7
3,587,038	+		GFF3538	0.77	-2.2
3,587,038	+		GFF3538	0.77	-1.8
3,587,038	+		GFF3538	0.77	-2.5
3,587,038	+		GFF3538	0.77	-1.9
3,587,038	+		GFF3538	0.77	-1.1
3,587,043	+		GFF3538	0.78	+0.1
3,587,046	-		GFF3538	0.78	-1.7
3,587,046	-		GFF3538	0.78	-2.6
3,587,046	-		GFF3538	0.78	-3.1
3,587,046	-		GFF3538	0.78	-2.2
3,587,046	-		GFF3538	0.78	-2.4
3,587,046	-		GFF3538	0.78	-1.0
3,587,046	-		GFF3538	0.78	-0.5
3,587,046	-		GFF3538	0.78	-2.2
3,587,046	-		GFF3538	0.78	-2.1
3,587,046	-		GFF3538	0.78	-2.0
3,587,046	-		GFF3538	0.78	-1.3
3,587,046	-		GFF3538	0.78	-2.2
3,587,046	-		GFF3538	0.78	-1.3
3,587,046	-		GFF3538	0.78	-3.4
3,587,046	-		GFF3538	0.78	-2.6
3,587,046	-		GFF3538	0.78	-0.3
3,587,046	-		GFF3538	0.78	-1.3
3,587,066	+		GFF3538	0.81	-1.5
3,587,133	+		GFF3538	0.89	-2.5
3,587,143	+				-1.6
3,587,163	-				-2.4
3,587,174	+				+0.4
3,587,201	-				-0.3
3,587,202	+				-1.0
3,587,212	-				+0.5
3,587,220	-				+0.5
3,587,223	+				-0.1
3,587,223	+				+0.5
3,587,231	-				-0.8
3,587,231	-				+0.8
3,587,286	-		GFF3539	0.14	-0.3
3,587,286	-		GFF3539	0.14	+0.4
3,587,286	-		GFF3539	0.14	-0.9
3,587,322	-		GFF3539	0.22	-1.0
3,587,359	+		GFF3539	0.29	-0.2
3,587,421	+		GFF3539	0.42	-0.5
3,587,421	+		GFF3539	0.42	-1.0
3,587,427	+		GFF3539	0.43	+0.3
3,587,429	-		GFF3539	0.44	+0.7
3,587,437	+		GFF3539	0.45	-0.8
3,587,453	+		GFF3539	0.49	-1.1
3,587,469	+		GFF3539	0.52	-0.3
3,587,475	+		GFF3539	0.53	-2.3
3,587,475	+		GFF3539	0.53	+0.2
3,587,475	+		GFF3539	0.53	-2.2
3,587,475	+		GFF3539	0.53	-1.7
3,587,477	-		GFF3539	0.54	-0.4
3,587,481	+		GFF3539	0.55	-0.1
3,587,498	-		GFF3539	0.58	+0.0
3,587,523	+		GFF3539	0.63	-1.5
3,587,528	+		GFF3539	0.64	-0.5
3,587,531	-		GFF3539	0.65	-2.2
3,587,537	+		GFF3539	0.66	-1.3
3,587,541	-		GFF3539	0.67	+0.2
3,587,596	+		GFF3539	0.78	-1.0
3,587,616	-		GFF3539	0.82	+1.3
3,587,688	+				+0.7
3,587,691	-				-1.1
3,587,702	+				+0.5
3,587,735	+				-0.7
3,587,768	-				-1.4
3,587,806	+				+1.0
3,587,811	+				-1.8
3,587,814	-				-1.0
3,587,830	-		GFF3540	0.11	+1.5
3,587,832	+		GFF3540	0.11	-0.5
3,587,832	+		GFF3540	0.11	+0.2
3,587,832	+		GFF3540	0.11	-0.3
3,587,832	+		GFF3540	0.11	-0.1
3,587,832	+		GFF3540	0.11	-0.2
3,587,832	+		GFF3540	0.11	-1.3
3,587,832	+		GFF3540	0.11	-0.1
3,587,840	-		GFF3540	0.12	+0.4
3,587,840	-		GFF3540	0.12	+2.0
3,587,840	-		GFF3540	0.12	-0.6
3,587,840	-		GFF3540	0.12	+1.5
3,587,840	-		GFF3540	0.12	+0.3
3,587,840	-		GFF3540	0.12	+0.7
3,587,840	-		GFF3540	0.12	+0.0
3,587,840	-		GFF3540	0.12	-0.2
3,587,840	-		GFF3540	0.12	+0.7
3,587,840	-		GFF3540	0.12	+0.1
3,587,840	-		GFF3540	0.12	-1.2
3,587,840	-		GFF3540	0.12	-1.3
3,587,840	-		GFF3540	0.12	+0.5
3,587,840	-		GFF3540	0.12	+0.3
3,587,840	-		GFF3540	0.12	-1.9
3,587,854	+		GFF3540	0.13	-1.4
3,587,859	+		GFF3540	0.14	+0.8
3,587,867	-		GFF3540	0.14	+0.3
3,587,867	-		GFF3540	0.14	-1.5
3,587,867	-		GFF3540	0.14	+0.8
3,587,867	-		GFF3540	0.14	+0.5
3,587,867	-		GFF3540	0.14	+1.1
3,587,876	+		GFF3540	0.15	+0.1
3,587,900	-		GFF3540	0.17	-1.6
3,587,916	-		GFF3540	0.18	+2.0
3,587,953	+		GFF3540	0.22	+0.5
3,588,121	+		GFF3540	0.36	-1.5
3,588,121	+		GFF3540	0.36	-0.3
3,588,126	+		GFF3540	0.36	+0.5
3,588,129	-		GFF3540	0.36	+1.1
3,588,129	-		GFF3540	0.36	-0.5
3,588,129	-		GFF3540	0.36	+2.2
3,588,129	-		GFF3540	0.36	-0.3
3,588,149	+		GFF3540	0.38	-2.7
3,588,152	-		GFF3540	0.38	+0.0
3,588,157	-		GFF3540	0.39	-0.4
3,588,166	-		GFF3540	0.39	+0.7
3,588,192	-		GFF3540	0.42	-1.6
3,588,197	-		GFF3540	0.42	+0.7
3,588,201	-		GFF3540	0.42	+0.1
3,588,211	-		GFF3540	0.43	+0.6
3,588,244	-		GFF3540	0.46	+1.1
3,588,244	-		GFF3540	0.46	+1.0
3,588,304	-		GFF3540	0.51	-2.5
3,588,322	+		GFF3540	0.53	-0.4
3,588,322	+		GFF3540	0.53	-0.8
3,588,327	+		GFF3540	0.53	+0.1
3,588,330	-		GFF3540	0.53	-0.5
3,588,330	-		GFF3540	0.53	+1.0
3,588,335	-		GFF3540	0.54	+1.8
3,588,335	-		GFF3540	0.54	+1.5
3,588,353	-		GFF3540	0.55	+0.1
3,588,425	-		GFF3540	0.61	+0.2
3,588,446	+		GFF3540	0.63	-0.1
3,588,451	+		GFF3540	0.64	+1.3
3,588,520	+		GFF3540	0.69	+0.7
3,588,526	+		GFF3540	0.70	+0.2
3,588,607	+		GFF3540	0.77	+0.1
3,588,612	+		GFF3540	0.77	-1.1
3,588,615	-		GFF3540	0.77	-0.4
3,588,615	-		GFF3540	0.77	+1.0
3,588,615	-		GFF3540	0.77	-0.6
3,588,615	-		GFF3540	0.77	-0.3
3,588,672	+		GFF3540	0.82	+0.1
3,588,675	-		GFF3540	0.82	+0.2
3,588,675	-		GFF3540	0.82	+0.4
3,588,680	-		GFF3540	0.83	+1.6
3,588,680	-		GFF3540	0.83	+2.1
3,588,685	-		GFF3540	0.83	-0.8