Strain Fitness in Sphingobium sp. HT1-2 around GFF3534

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,580,162	+		GFF3533	0.84	+0.3
3,580,182	-		GFF3533	0.84	-0.1
3,580,355	+				-0.2
3,580,355	+				+1.1
3,580,373	+				+0.1
3,580,391	-				-1.0
3,580,412	-				-0.7
3,580,419	+				-1.4
3,580,429	-				+1.5
3,580,439	+				-0.9
3,580,447	-				+0.4
3,580,461	+				+1.0
3,580,469	-				-0.9
3,580,529	-				+0.9
3,580,559	-				+0.1
3,580,561	-				-0.1
3,580,561	-				+0.6
3,580,583	-				+1.5
3,580,636	+				-1.4
3,580,663	-				+0.1
3,580,712	+				+1.1
3,580,734	+				-1.6
3,580,797	+				-1.3
3,580,797	+				-0.2
3,580,799	-				-0.9
3,580,799	-				+1.2
3,580,800	-				-1.2
3,580,833	-				+0.4
3,580,859	-				-0.7
3,580,859	-				-0.7
3,580,878	+				+0.3
3,580,935	-				+1.6
3,581,008	+				+0.9
3,581,008	+				-0.4
3,581,008	+				-0.3
3,581,008	+				-1.0
3,581,008	+				+0.7
3,581,008	+				-0.8
3,581,008	+				-0.3
3,581,016	-				-0.0
3,581,016	-				-1.2
3,581,016	-				-1.4
3,581,016	-				+0.1
3,581,059	+				+0.8
3,581,059	+				-1.0
3,581,067	-				-0.6
3,581,067	-				-1.1
3,581,077	+				-2.4
3,581,077	+				-1.1
3,581,085	-				-1.4
3,581,096	-				-1.9
3,581,101	+				-0.8
3,581,101	+				+0.5
3,581,109	-				+1.2
3,581,109	-				-1.7
3,581,109	-				+0.1
3,581,109	-				-0.3
3,581,192	+		GFF3534	0.13	-0.6
3,581,192	+		GFF3534	0.13	-1.1
3,581,192	+		GFF3534	0.13	+0.5
3,581,192	+		GFF3534	0.13	-1.4
3,581,192	+		GFF3534	0.13	-1.5
3,581,192	+		GFF3534	0.13	-1.5
3,581,192	+		GFF3534	0.13	-0.2
3,581,192	+		GFF3534	0.13	-1.4
3,581,192	+		GFF3534	0.13	-0.4
3,581,192	+		GFF3534	0.13	-1.0
3,581,192	+		GFF3534	0.13	-0.9
3,581,192	+		GFF3534	0.13	-2.8
3,581,199	-		GFF3534	0.14	-0.3
3,581,200	-		GFF3534	0.14	-1.8
3,581,200	-		GFF3534	0.14	-1.5
3,581,200	-		GFF3534	0.14	-1.3
3,581,234	-		GFF3534	0.20	-1.6
3,581,235	-		GFF3534	0.20	-2.1
3,581,246	+		GFF3534	0.22	-0.8
3,581,247	+		GFF3534	0.22	-0.7
3,581,247	+		GFF3534	0.22	-1.2
3,581,247	+		GFF3534	0.22	-1.2
3,581,253	-		GFF3534	0.23	-2.0
3,581,255	-		GFF3534	0.23	-3.4
3,581,281	+		GFF3534	0.28	-1.4
3,581,281	-		GFF3534	0.28	-2.5
3,581,302	+		GFF3534	0.31	-2.9
3,581,310	-		GFF3534	0.32	-1.3
3,581,310	-		GFF3534	0.32	-2.0
3,581,310	-		GFF3534	0.32	+0.3
3,581,310	-		GFF3534	0.32	-1.5
3,581,340	+		GFF3534	0.38	-2.1
3,581,350	+		GFF3534	0.39	-1.3
3,581,399	+		GFF3534	0.48	-2.4
3,581,420	+		GFF3534	0.51	-2.6
3,581,428	+		GFF3534	0.52	-1.8
3,581,428	+		GFF3534	0.52	-1.9
3,581,428	-		GFF3534	0.52	+0.5
3,581,428	-		GFF3534	0.52	-2.1
3,581,428	-		GFF3534	0.52	-1.7
3,581,449	+		GFF3534	0.56	+1.9
3,581,471	+		GFF3534	0.60	-2.7
3,581,471	+		GFF3534	0.60	-1.2
3,581,472	+		GFF3534	0.60	-2.9
3,581,479	-		GFF3534	0.61	-1.7
3,581,480	-		GFF3534	0.61	-1.9
3,581,530	+		GFF3534	0.70	-0.1
3,581,560	+		GFF3534	0.75	-0.9
3,581,564	-		GFF3534	0.75	-1.2
3,581,565	+		GFF3534	0.76	+0.5
3,581,568	-		GFF3534	0.76	-2.6
3,581,571	+		GFF3534	0.77	-1.9
3,581,597	-		GFF3534	0.81	-1.5
3,581,604	+		GFF3534	0.82	-0.6
3,581,612	-		GFF3534	0.84	-2.2
3,581,649	-		GFF3534	0.90	-3.3
3,581,687	-				+0.1
3,581,703	+				-0.3
3,581,711	-				+0.2
3,581,711	-				+1.5
3,581,711	-				+0.8
3,581,711	-				+1.5
3,581,730	-				+0.3
3,581,752	+				+1.5
3,581,752	+				+1.0
3,581,762	+				+0.3
3,581,774	+				+0.1
3,581,779	+				-1.0
3,581,801	+				+0.1
3,581,812	+				+2.6
3,581,820	+				-0.3
3,581,820	-				+0.1
3,581,825	+				+0.8
3,581,825	+				-0.1
3,581,825	+				+1.2
3,581,825	+				+0.3
3,581,833	-				+0.2
3,581,833	-				+0.4
3,581,833	-				-0.3
3,581,833	-				+1.5
3,581,833	-				+0.2
3,581,833	-				-0.9
3,581,833	-				+0.8
3,581,858	+				-1.5
3,581,878	+				-2.2
3,581,880	+				-1.2
3,581,921	-				+0.6
3,582,003	+		GFF3535	0.14	-0.9
3,582,003	+		GFF3535	0.14	-0.3
3,582,009	+		GFF3535	0.15	-0.4
3,582,017	-		GFF3535	0.15	-0.6
3,582,031	+		GFF3535	0.16	-0.5
3,582,050	+		GFF3535	0.17	+0.7
3,582,074	-		GFF3535	0.19	-1.9
3,582,088	+		GFF3535	0.20	+0.2
3,582,094	+		GFF3535	0.20	-0.6
3,582,100	+		GFF3535	0.21	-0.2
3,582,115	-		GFF3535	0.22	+1.3
3,582,154	+		GFF3535	0.24	-2.8
3,582,162	-		GFF3535	0.25	-0.4
3,582,189	-		GFF3535	0.26	+0.3
3,582,193	-		GFF3535	0.27	+1.4
3,582,261	-		GFF3535	0.31	+0.3
3,582,285	-		GFF3535	0.33	-0.5
3,582,286	+		GFF3535	0.33	+0.0
3,582,294	-		GFF3535	0.33	+0.3
3,582,320	+		GFF3535	0.35	-0.6
3,582,372	+		GFF3535	0.38	+0.1
3,582,380	-		GFF3535	0.39	-0.4
3,582,445	-		GFF3535	0.43	-0.8
3,582,472	+		GFF3535	0.45	-0.1
3,582,472	+		GFF3535	0.45	-2.2
3,582,477	+		GFF3535	0.45	+0.3
3,582,477	+		GFF3535	0.45	-0.0
3,582,477	+		GFF3535	0.45	+0.0
3,582,477	+		GFF3535	0.45	-0.6
3,582,477	+		GFF3535	0.45	-1.2
3,582,477	+		GFF3535	0.45	-0.9
3,582,477	+		GFF3535	0.45	+0.6
3,582,477	+		GFF3535	0.45	+0.8
3,582,477	+		GFF3535	0.45	-0.8
3,582,477	+		GFF3535	0.45	-1.4
3,582,477	+		GFF3535	0.45	+0.5
3,582,477	+		GFF3535	0.45	-0.3
3,582,477	+		GFF3535	0.45	-0.4
3,582,477	+		GFF3535	0.45	-0.0
3,582,477	+		GFF3535	0.45	-2.1
3,582,477	+		GFF3535	0.45	-1.1
3,582,482	+		GFF3535	0.45	-0.8
3,582,485	-		GFF3535	0.45	-0.7
3,582,485	-		GFF3535	0.45	+0.3
3,582,485	-		GFF3535	0.45	+0.0
3,582,485	-		GFF3535	0.45	-0.0
3,582,485	-		GFF3535	0.45	-0.3
3,582,485	-		GFF3535	0.45	+0.4
3,582,490	-		GFF3535	0.46	+1.6
3,582,490	-		GFF3535	0.46	-0.3
3,582,500	+		GFF3535	0.46	+1.2
3,582,508	-		GFF3535	0.47	-0.7
3,582,532	-		GFF3535	0.49	-0.5
3,582,537	-		GFF3535	0.49	+0.2
3,582,576	-		GFF3535	0.51	+0.8
3,582,586	+		GFF3535	0.52	-1.3
3,582,589	-		GFF3535	0.52	+1.2
3,582,589	-		GFF3535	0.52	-0.9
3,582,589	-		GFF3535	0.52	+0.7
3,582,591	+		GFF3535	0.52	-0.7
3,582,591	+		GFF3535	0.52	+0.1
3,582,591	+		GFF3535	0.52	+0.5
3,582,591	+		GFF3535	0.52	+0.1
3,582,594	-		GFF3535	0.53	+0.3
3,582,594	-		GFF3535	0.53	-1.5
3,582,594	-		GFF3535	0.53	+1.1
3,582,594	-		GFF3535	0.53	+0.4
3,582,596	+		GFF3535	0.53	+0.7
3,582,613	+		GFF3535	0.54	+0.6
3,582,616	-		GFF3535	0.54	+0.8
3,582,616	-		GFF3535	0.54	-0.9
3,582,636	-		GFF3535	0.55	+1.0
3,582,638	+		GFF3535	0.55	-1.1
3,582,646	-		GFF3535	0.56	-2.9
3,582,646	-		GFF3535	0.56	+0.1
3,582,646	-		GFF3535	0.56	+0.5
3,582,663	-		GFF3535	0.57	+0.5
3,582,671	+		GFF3535	0.57	+1.5
3,582,698	+		GFF3535	0.59	+0.6
3,582,698	+		GFF3535	0.59	+0.1
3,582,699	+		GFF3535	0.59	+1.5
3,582,706	-		GFF3535	0.60	+0.7
3,582,706	-		GFF3535	0.60	+0.4
3,582,706	-		GFF3535	0.60	-0.3