Strain Fitness in Sphingobium sp. HT1-2 around GFF3533

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,577,147	-		GFF3531	0.76	+1.3
3,577,173	+		GFF3531	0.77	-0.9
3,577,222	+		GFF3531	0.81	-0.3
3,577,230	-		GFF3531	0.82	-1.3
3,577,236	-		GFF3531	0.82	+0.6
3,577,240	-		GFF3531	0.82	-0.3
3,577,240	-		GFF3531	0.82	+0.2
3,577,240	-		GFF3531	0.82	-0.1
3,577,260	-		GFF3531	0.84	+0.8
3,577,272	+		GFF3531	0.85	-0.2
3,577,279	+		GFF3531	0.85	-0.5
3,577,287	-		GFF3531	0.86	+0.3
3,577,320	+		GFF3531	0.88	+0.5
3,577,323	-		GFF3531	0.88	-0.8
3,577,369	+				+0.9
3,577,369	+				-0.6
3,577,377	-				-0.7
3,577,393	-				+2.1
3,577,398	-				+3.2
3,577,444	-				+2.0
3,577,471	-				-0.9
3,577,485	+				-1.4
3,577,511	+				+0.2
3,577,513	+				+2.5
3,577,514	-				-0.0
3,577,519	-				+0.3
3,577,543	+				+1.0
3,577,543	+				-0.3
3,577,548	+				-1.6
3,577,551	-				-1.5
3,577,551	-				-1.6
3,577,569	-				-0.7
3,577,665	-				+0.3
3,577,674	-				+0.3
3,577,741	+		GFF3532	0.17	+1.1
3,577,741	+		GFF3532	0.17	-0.2
3,577,741	+		GFF3532	0.17	-1.3
3,577,741	+		GFF3532	0.17	-0.9
3,577,758	+		GFF3532	0.21	+0.0
3,577,802	+		GFF3532	0.31	+0.8
3,577,808	+		GFF3532	0.32	+0.3
3,577,808	+		GFF3532	0.32	+1.5
3,577,809	+		GFF3532	0.32	+0.2
3,577,823	+		GFF3532	0.35	+0.4
3,577,844	+		GFF3532	0.40	+0.2
3,577,889	+		GFF3532	0.50	-1.2
3,577,889	+		GFF3532	0.50	-1.1
3,577,889	+		GFF3532	0.50	-1.0
3,577,889	+		GFF3532	0.50	+0.5
3,577,889	+		GFF3532	0.50	-0.4
3,577,897	-		GFF3532	0.52	+0.6
3,577,897	-		GFF3532	0.52	-1.2
3,577,897	-		GFF3532	0.52	+0.3
3,577,897	-		GFF3532	0.52	+0.1
3,577,939	+		GFF3532	0.61	-0.9
3,577,977	+		GFF3532	0.69	+0.2
3,577,990	+		GFF3532	0.72	-1.4
3,577,990	+		GFF3532	0.72	-0.2
3,577,990	+		GFF3532	0.72	+0.6
3,577,990	+		GFF3532	0.72	+0.5
3,577,990	+		GFF3532	0.72	+0.5
3,577,990	+		GFF3532	0.72	-2.3
3,577,990	+		GFF3532	0.72	-0.8
3,577,990	+		GFF3532	0.72	+0.1
3,577,990	+		GFF3532	0.72	-0.4
3,577,990	+		GFF3532	0.72	-0.3
3,577,998	-		GFF3532	0.74	+0.0
3,578,013	+		GFF3532	0.77	+0.4
3,578,021	-		GFF3532	0.79	-0.0
3,578,035	+		GFF3532	0.82	+0.7
3,578,069	-		GFF3532	0.89	-0.5
3,578,082	-				-1.3
3,578,128	-				+0.5
3,578,153	-				+1.3
3,578,173	+				-0.4
3,578,173	+				-0.7
3,578,325	+				+0.1
3,578,325	+				-0.1
3,578,325	+				+0.7
3,578,325	+				-0.9
3,578,326	+				+0.3
3,578,333	-				+1.7
3,578,341	+				-0.3
3,578,376	-				+1.0
3,578,379	+				+0.9
3,578,410	+		GFF3533	0.11	-0.1
3,578,410	+		GFF3533	0.11	+0.5
3,578,443	-		GFF3533	0.12	+0.1
3,578,488	+		GFF3533	0.14	+0.0
3,578,556	+		GFF3533	0.17	-1.1
3,578,574	+		GFF3533	0.18	-0.3
3,578,575	+		GFF3533	0.18	+0.3
3,578,651	+		GFF3533	0.21	+0.1
3,578,720	-		GFF3533	0.24	+1.1
3,578,767	+		GFF3533	0.26	+0.1
3,578,815	-		GFF3533	0.28	+0.1
3,578,822	+		GFF3533	0.28	+0.3
3,578,822	+		GFF3533	0.28	+1.7
3,578,830	-		GFF3533	0.28	-0.2
3,578,830	-		GFF3533	0.28	+1.1
3,578,830	-		GFF3533	0.28	+0.6
3,578,865	-		GFF3533	0.30	-0.3
3,578,924	-		GFF3533	0.32	+2.0
3,579,005	-		GFF3533	0.36	-0.1
3,579,072	+		GFF3533	0.38	-1.6
3,579,101	+		GFF3533	0.40	+1.2
3,579,176	+		GFF3533	0.43	-0.6
3,579,202	+		GFF3533	0.44	+0.9
3,579,202	+		GFF3533	0.44	+0.9
3,579,202	+		GFF3533	0.44	+1.6
3,579,202	+		GFF3533	0.44	-1.4
3,579,202	+		GFF3533	0.44	+0.5
3,579,202	+		GFF3533	0.44	-1.0
3,579,202	+		GFF3533	0.44	+0.7
3,579,202	+		GFF3533	0.44	-1.4
3,579,202	+		GFF3533	0.44	-0.5
3,579,202	+		GFF3533	0.44	+0.5
3,579,217	+		GFF3533	0.44	+0.5
3,579,227	+		GFF3533	0.45	-1.1
3,579,240	-		GFF3533	0.45	-0.9
3,579,247	-		GFF3533	0.46	-1.2
3,579,249	+		GFF3533	0.46	-0.1
3,579,249	+		GFF3533	0.46	+0.9
3,579,255	+		GFF3533	0.46	+0.7
3,579,255	+		GFF3533	0.46	+0.6
3,579,255	+		GFF3533	0.46	+0.7
3,579,256	+		GFF3533	0.46	+1.0
3,579,257	-		GFF3533	0.46	+1.5
3,579,264	-		GFF3533	0.46	+0.6
3,579,264	-		GFF3533	0.46	+0.0
3,579,309	-		GFF3533	0.48	+1.5
3,579,362	-		GFF3533	0.50	+0.1
3,579,378	-		GFF3533	0.51	+0.1
3,579,488	+		GFF3533	0.56	+1.5
3,579,488	+		GFF3533	0.56	-0.7
3,579,501	+		GFF3533	0.56	-1.9
3,579,533	+		GFF3533	0.58	+0.0
3,579,533	+		GFF3533	0.58	+0.1
3,579,533	+		GFF3533	0.58	-1.3
3,579,542	+		GFF3533	0.58	+1.1
3,579,622	-		GFF3533	0.61	+0.8
3,579,691	+		GFF3533	0.64	-0.1
3,579,695	+		GFF3533	0.64	-1.0
3,579,703	-		GFF3533	0.65	-0.9
3,579,811	-		GFF3533	0.69	+1.1
3,579,875	+		GFF3533	0.72	-1.4
3,579,879	+		GFF3533	0.72	-0.5
3,579,885	+		GFF3533	0.72	-0.6
3,579,943	+		GFF3533	0.75	+1.0
3,580,072	-		GFF3533	0.80	-0.1
3,580,162	+		GFF3533	0.84	+0.3
3,580,182	-		GFF3533	0.84	-0.1
3,580,355	+				-0.2
3,580,355	+				+1.1
3,580,373	+				+0.1
3,580,391	-				-1.0
3,580,412	-				-0.7
3,580,419	+				-1.4
3,580,429	-				+1.5
3,580,439	+				-0.9
3,580,447	-				+0.4
3,580,461	+				+1.0
3,580,469	-				-0.9
3,580,529	-				+0.9
3,580,559	-				+0.1
3,580,561	-				-0.1
3,580,561	-				+0.6
3,580,583	-				+1.5
3,580,636	+				-1.4
3,580,663	-				+0.1
3,580,712	+				+1.1
3,580,734	+				-1.6
3,580,797	+				-1.3
3,580,797	+				-0.2
3,580,799	-				-0.9
3,580,799	-				+1.2
3,580,800	-				-1.2
3,580,833	-				+0.4
3,580,859	-				-0.7
3,580,859	-				-0.7
3,580,878	+				+0.3
3,580,935	-				+1.6
3,581,008	+				+0.9
3,581,008	+				-0.4
3,581,008	+				-0.3
3,581,008	+				-1.0
3,581,008	+				+0.7
3,581,008	+				-0.8
3,581,008	+				-0.3
3,581,016	-				-0.0
3,581,016	-				-1.2
3,581,016	-				-1.4
3,581,016	-				+0.1
3,581,059	+				+0.8
3,581,059	+				-1.0
3,581,067	-				-0.6
3,581,067	-				-1.1
3,581,077	+				-2.4
3,581,077	+				-1.1
3,581,085	-				-1.4
3,581,096	-				-1.9
3,581,101	+				-0.8
3,581,101	+				+0.5
3,581,109	-				+1.2
3,581,109	-				-1.7
3,581,109	-				+0.1
3,581,109	-				-0.3
3,581,192	+		GFF3534	0.13	-0.6
3,581,192	+		GFF3534	0.13	-1.1
3,581,192	+		GFF3534	0.13	+0.5
3,581,192	+		GFF3534	0.13	-1.4
3,581,192	+		GFF3534	0.13	-1.5
3,581,192	+		GFF3534	0.13	-1.5
3,581,192	+		GFF3534	0.13	-0.2
3,581,192	+		GFF3534	0.13	-1.4
3,581,192	+		GFF3534	0.13	-0.4
3,581,192	+		GFF3534	0.13	-1.0
3,581,192	+		GFF3534	0.13	-0.9
3,581,192	+		GFF3534	0.13	-2.8
3,581,199	-		GFF3534	0.14	-0.3
3,581,200	-		GFF3534	0.14	-1.8
3,581,200	-		GFF3534	0.14	-1.5
3,581,200	-		GFF3534	0.14	-1.3
3,581,234	-		GFF3534	0.20	-1.6
3,581,235	-		GFF3534	0.20	-2.1
3,581,246	+		GFF3534	0.22	-0.8
3,581,247	+		GFF3534	0.22	-0.7
3,581,247	+		GFF3534	0.22	-1.2
3,581,247	+		GFF3534	0.22	-1.2
3,581,253	-		GFF3534	0.23	-2.0
3,581,255	-		GFF3534	0.23	-3.4
3,581,281	+		GFF3534	0.28	-1.4
3,581,281	-		GFF3534	0.28	-2.5
3,581,302	+		GFF3534	0.31	-2.9
3,581,310	-		GFF3534	0.32	-1.3
3,581,310	-		GFF3534	0.32	-2.0
3,581,310	-		GFF3534	0.32	+0.3
3,581,310	-		GFF3534	0.32	-1.5
3,581,340	+		GFF3534	0.38	-2.1
3,581,350	+		GFF3534	0.39	-1.3
3,581,399	+		GFF3534	0.48	-2.4
3,581,420	+		GFF3534	0.51	-2.6
3,581,428	+		GFF3534	0.52	-1.8
3,581,428	+		GFF3534	0.52	-1.9
3,581,428	-		GFF3534	0.52	+0.5
3,581,428	-		GFF3534	0.52	-2.1
3,581,428	-		GFF3534	0.52	-1.7
3,581,449	+		GFF3534	0.56	+1.9
3,581,471	+		GFF3534	0.60	-2.7
3,581,471	+		GFF3534	0.60	-1.2
3,581,472	+		GFF3534	0.60	-2.9
3,581,479	-		GFF3534	0.61	-1.7
3,581,480	-		GFF3534	0.61	-1.9
3,581,530	+		GFF3534	0.70	-0.1