Strain Fitness in Sphingobium sp. HT1-2 around GFF3503

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,540,856	+		GFF3502	0.19	-0.6
3,540,858	-		GFF3502	0.19	-0.4
3,540,858	-		GFF3502	0.19	-0.7
3,540,883	-		GFF3502	0.21	-1.7
3,540,898	+		GFF3502	0.23	-0.4
3,540,898	+		GFF3502	0.23	+0.8
3,540,898	+		GFF3502	0.23	+0.1
3,540,903	+		GFF3502	0.23	-0.6
3,540,906	-		GFF3502	0.23	-0.9
3,540,906	-		GFF3502	0.23	+0.2
3,540,932	-		GFF3502	0.25	-0.6
3,540,937	-		GFF3502	0.26	+0.4
3,540,954	-		GFF3502	0.27	+0.3
3,540,956	+		GFF3502	0.28	-0.9
3,540,956	+		GFF3502	0.28	-2.0
3,540,960	+		GFF3502	0.28	-1.2
3,540,967	+		GFF3502	0.28	+0.2
3,540,987	+		GFF3502	0.30	-0.2
3,540,990	+		GFF3502	0.30	+0.0
3,541,004	+		GFF3502	0.32	-1.2
3,541,009	+		GFF3502	0.32	-0.3
3,541,024	-		GFF3502	0.33	-0.6
3,541,040	+		GFF3502	0.35	-0.1
3,541,043	-		GFF3502	0.35	+1.3
3,541,054	-		GFF3502	0.36	-0.0
3,541,065	-		GFF3502	0.37	+1.6
3,541,084	-		GFF3502	0.39	-1.1
3,541,099	-		GFF3502	0.40	-0.9
3,541,130	+		GFF3502	0.43	-2.2
3,541,138	-		GFF3502	0.43	-1.8
3,541,145	+		GFF3502	0.44	-0.0
3,541,152	+		GFF3502	0.44	-0.5
3,541,152	+		GFF3502	0.44	+1.2
3,541,152	+		GFF3502	0.44	-0.5
3,541,160	-		GFF3502	0.45	+0.2
3,541,180	-		GFF3502	0.47	-1.9
3,541,196	+		GFF3502	0.48	-0.1
3,541,196	+		GFF3502	0.48	-0.4
3,541,204	-		GFF3502	0.49	+0.2
3,541,226	+		GFF3502	0.51	+0.2
3,541,230	-		GFF3502	0.51	-2.5
3,541,248	+		GFF3502	0.53	-0.1
3,541,250	-		GFF3502	0.53	-1.0
3,541,268	-		GFF3502	0.54	-1.8
3,541,273	-		GFF3502	0.55	+0.1
3,541,275	-		GFF3502	0.55	-1.2
3,541,279	+		GFF3502	0.55	-0.3
3,541,280	-		GFF3502	0.56	-0.7
3,541,296	+		GFF3502	0.57	+0.1
3,541,296	+		GFF3502	0.57	-1.8
3,541,297	+		GFF3502	0.57	+1.6
3,541,306	+		GFF3502	0.58	-1.2
3,541,352	+		GFF3502	0.62	-0.5
3,541,354	-		GFF3502	0.62	-0.4
3,541,354	-		GFF3502	0.62	+0.6
3,541,357	+		GFF3502	0.62	-0.5
3,541,357	+		GFF3502	0.62	+0.0
3,541,357	+		GFF3502	0.62	-0.5
3,541,360	-		GFF3502	0.62	+1.1
3,541,360	-		GFF3502	0.62	-1.8
3,541,365	-		GFF3502	0.63	+0.9
3,541,375	-		GFF3502	0.64	+0.1
3,541,375	-		GFF3502	0.64	+0.5
3,541,383	+		GFF3502	0.64	-0.9
3,541,383	+		GFF3502	0.64	-1.0
3,541,391	-		GFF3502	0.65	-1.3
3,541,391	-		GFF3502	0.65	-0.9
3,541,391	-		GFF3502	0.65	+0.6
3,541,399	+		GFF3502	0.66	-0.4
3,541,407	-		GFF3502	0.66	-0.5
3,541,441	-		GFF3502	0.69	-1.0
3,541,447	-		GFF3502	0.70	+0.0
3,541,473	+		GFF3502	0.72	+0.2
3,541,525	+		GFF3502	0.77	-0.8
3,541,530	+		GFF3502	0.77	-3.0
3,541,530	+		GFF3502	0.77	+0.0
3,541,538	-		GFF3502	0.78	-0.6
3,541,545	-		GFF3502	0.78	-0.1
3,541,555	-		GFF3502	0.79	-0.7
3,541,585	+		GFF3502	0.82	-0.1
3,541,585	+		GFF3502	0.82	-1.1
3,541,586	+		GFF3502	0.82	+0.2
3,541,593	-		GFF3502	0.83	-0.4
3,541,593	-		GFF3502	0.83	-1.4
3,541,595	+		GFF3502	0.83	-1.0
3,541,612	-		GFF3502	0.84	+0.9
3,541,637	+		GFF3502	0.86	-1.0
3,541,644	+		GFF3502	0.87	-0.2
3,541,645	-		GFF3502	0.87	+0.7
3,541,651	+		GFF3502	0.88	-0.6
3,541,651	+		GFF3502	0.88	+0.4
3,541,659	-		GFF3502	0.88	-1.2
3,541,683	+				-0.3
3,541,691	+				-0.5
3,541,722	+				-1.1
3,541,730	-				-1.7
3,541,773	-				+0.5
3,541,793	+				+0.3
3,541,801	-				-2.1
3,541,801	-				-0.3
3,541,801	-				+0.3
3,541,801	-				-0.3
3,541,817	+				+1.0
3,541,817	+				-1.5
3,541,817	+				+0.4
3,541,817	+				-0.5
3,541,817	+				-1.1
3,541,817	+				-0.5
3,541,824	-				+1.0
3,541,824	-				-0.3
3,541,824	-				+0.6
3,541,824	-				-0.3
3,541,825	-				-0.1
3,541,825	-				-0.1
3,541,825	-				-2.0
3,541,825	-				-0.9
3,541,825	-				-0.3
3,541,845	+				-1.3
3,541,845	+				-1.0
3,541,850	+				+0.4
3,541,853	-				-2.0
3,541,853	-				-1.1
3,541,858	-				-0.5
3,541,871	-				-0.1
3,541,873	+				+0.3
3,541,873	+				+0.2
3,541,873	+				-0.2
3,541,873	+				+0.4
3,541,873	+				+0.3
3,541,873	+				-0.4
3,541,873	+				-1.4
3,541,881	-				+0.0
3,541,881	-				-1.2
3,541,881	-				-1.0
3,541,888	-				-1.8
3,541,896	+				+0.1
3,541,904	-				+1.4
3,541,906	+				-1.4
3,541,906	+				+0.7
3,541,906	+				+0.9
3,541,906	+				+1.8
3,541,914	-		GFF3503	0.10	+0.1
3,541,914	-		GFF3503	0.10	-1.5
3,541,914	-		GFF3503	0.10	-1.2
3,541,914	-		GFF3503	0.10	+0.2
3,541,945	-		GFF3503	0.15	+0.8
3,541,956	-		GFF3503	0.17	+0.9
3,541,962	-		GFF3503	0.18	-1.2
3,541,967	-		GFF3503	0.18	+1.0
3,541,989	+		GFF3503	0.22	+0.4
3,541,989	+		GFF3503	0.22	-0.7
3,541,989	+		GFF3503	0.22	-0.4
3,541,989	+		GFF3503	0.22	+0.6
3,541,989	+		GFF3503	0.22	-0.7
3,541,997	-		GFF3503	0.23	-1.5
3,541,997	-		GFF3503	0.23	-0.9
3,541,997	-		GFF3503	0.23	-1.7
3,541,997	-		GFF3503	0.23	-0.9
3,542,006	+		GFF3503	0.24	+0.2
3,542,032	+		GFF3503	0.28	-1.2
3,542,066	+		GFF3503	0.34	-1.2
3,542,066	+		GFF3503	0.34	-0.4
3,542,066	+		GFF3503	0.34	-1.1
3,542,074	+		GFF3503	0.35	+0.1
3,542,074	-		GFF3503	0.35	+1.3
3,542,074	-		GFF3503	0.35	-0.5
3,542,074	-		GFF3503	0.35	+0.5
3,542,074	-		GFF3503	0.35	+0.2
3,542,126	-		GFF3503	0.43	-1.7
3,542,126	-		GFF3503	0.43	-0.9
3,542,166	+		GFF3503	0.49	+0.4
3,542,172	+		GFF3503	0.50	-2.6
3,542,172	+		GFF3503	0.50	+0.3
3,542,180	-		GFF3503	0.51	-0.0
3,542,180	-		GFF3503	0.51	-0.0
3,542,180	-		GFF3503	0.51	+1.4
3,542,181	+		GFF3503	0.51	+0.5
3,542,182	-		GFF3503	0.51	-2.4
3,542,201	+		GFF3503	0.54	+0.5
3,542,208	+		GFF3503	0.55	-0.6
3,542,216	-		GFF3503	0.57	-0.2
3,542,216	-		GFF3503	0.57	+1.4
3,542,216	-		GFF3503	0.57	-1.5
3,542,224	-		GFF3503	0.58	+1.2
3,542,249	-		GFF3503	0.62	-0.5
3,542,288	+		GFF3503	0.68	+0.1
3,542,288	+		GFF3503	0.68	+0.8
3,542,288	+		GFF3503	0.68	+1.5
3,542,288	+		GFF3503	0.68	+0.1
3,542,288	+		GFF3503	0.68	+1.6
3,542,293	+		GFF3503	0.69	-1.3
3,542,293	+		GFF3503	0.69	-0.5
3,542,293	+		GFF3503	0.69	-0.6
3,542,293	+		GFF3503	0.69	+0.5
3,542,293	+		GFF3503	0.69	-0.4
3,542,293	+		GFF3503	0.69	-1.2
3,542,293	+		GFF3503	0.69	+1.7
3,542,293	+		GFF3503	0.69	-1.6
3,542,293	+		GFF3503	0.69	-0.8
3,542,293	+		GFF3503	0.69	-1.7
3,542,296	-		GFF3503	0.69	-0.4
3,542,296	-		GFF3503	0.69	-1.4
3,542,296	-		GFF3503	0.69	-0.7
3,542,296	-		GFF3503	0.69	-0.2
3,542,296	-		GFF3503	0.69	-0.5
3,542,296	-		GFF3503	0.69	+1.1
3,542,296	-		GFF3503	0.69	-0.5
3,542,301	+		GFF3503	0.70	-1.3
3,542,301	-		GFF3503	0.70	+0.8
3,542,301	-		GFF3503	0.70	-0.2
3,542,301	-		GFF3503	0.70	+0.3
3,542,301	-		GFF3503	0.70	-0.6
3,542,301	-		GFF3503	0.70	-0.9
3,542,301	-		GFF3503	0.70	+0.7
3,542,301	-		GFF3503	0.70	-1.2
3,542,301	-		GFF3503	0.70	+0.3
3,542,301	-		GFF3503	0.70	+0.6
3,542,319	+		GFF3503	0.73	-0.4
3,542,344	+		GFF3503	0.76	+0.3
3,542,347	+		GFF3503	0.77	+1.4
3,542,370	+		GFF3503	0.80	-0.3
3,542,371	+		GFF3503	0.80	-1.6
3,542,379	-		GFF3503	0.82	-0.4
3,542,379	-		GFF3503	0.82	-0.4
3,542,379	-		GFF3503	0.82	-2.0
3,542,394	+		GFF3503	0.84	+0.3
3,542,402	+		GFF3503	0.85	+0.9
3,542,430	+		GFF3503	0.90	-2.1
3,542,430	+		GFF3503	0.90	-1.8
3,542,450	+				-0.1
3,542,450	+				-2.4
3,542,458	-				-0.2
3,542,477	-				-0.9
3,542,488	-				-0.2
3,542,492	+				-1.4
3,542,492	+				-1.7
3,542,497	+				-0.8
3,542,497	+				-0.3
3,542,499	+				+0.6
3,542,499	+				-0.5
3,542,500	-				-2.4
3,542,505	-				-0.8
3,542,505	-				-1.2
3,542,505	-				+1.2
3,542,505	-				+0.3
3,542,505	-				+0.3
3,542,506	-				-1.0
3,542,507	-				-1.3
3,542,507	-				+1.8
3,542,507	-				+0.7
3,542,509	+				+0.1
3,542,512	-				-1.3
3,542,514	+				-0.0
3,542,523	-				+0.3
3,542,530	+				-1.4
3,542,534	+				-1.6
3,542,569	+				+0.2
3,542,577	-				-1.5
3,542,597	+				-0.9
3,542,601	+				+0.4
3,542,601	+				-0.3
3,542,601	+				+0.7
3,542,601	+				+0.8
3,542,633	+				-0.2
3,542,656	+				-1.3
3,542,664	-				+0.2
3,542,664	-				+0.5
3,542,664	-				-0.2
3,542,690	-				-1.5
3,542,711	-				-0.3
3,542,744	+				-1.8
3,542,752	-				+0.2
3,542,760	-				-0.3
3,542,771	+				+0.1
3,542,772	+				+0.9
3,542,782	+				-1.6
3,542,782	+				-0.7
3,542,788	+				-2.1
3,542,880	+				-0.6
3,542,880	+				-0.2
3,542,880	+				+0.2
3,542,880	+				-0.7
3,542,888	-				+1.6
3,542,888	-				-2.2
3,542,888	-				-0.2
3,542,895	-				+0.1
3,542,899	+				-0.2
3,542,899	+				-3.2
3,542,899	+				+0.2
3,542,899	+				-1.0
3,542,905	-				+0.6
3,542,907	-				+0.4
3,542,907	-				-1.2
3,542,907	-				-1.0
3,542,912	-				-0.5
3,542,919	+				-2.2
3,542,924	+				-0.7
3,542,924	+				-1.8
3,542,924	+				-0.8
3,542,932	-				-0.8
3,542,932	-				-1.3
3,542,932	-				-1.4
3,542,944	-				+0.2
3,542,946	+				+0.4
3,542,951	+				-0.6
3,542,951	-				+0.8
3,542,962	+				-1.6
3,542,970	+		GFF3504	0.10	-1.2
3,542,970	+		GFF3504	0.10	+0.6
3,542,970	-		GFF3504	0.10	-0.6
3,542,970	-		GFF3504	0.10	+0.5
3,542,970	-		GFF3504	0.10	+1.1
3,543,011	+		GFF3504	0.14	-2.9
3,543,011	+		GFF3504	0.14	-0.6
3,543,019	-		GFF3504	0.15	-0.5
3,543,019	-		GFF3504	0.15	+0.0
3,543,045	-		GFF3504	0.18	-0.8
3,543,047	-		GFF3504	0.18	+0.2
3,543,056	-		GFF3504	0.19	-1.9
3,543,056	-		GFF3504	0.19	-2.0
3,543,159	+		GFF3504	0.29	-1.0
3,543,167	-		GFF3504	0.30	-1.6
3,543,170	+		GFF3504	0.31	+0.7
3,543,177	+		GFF3504	0.31	-1.7
3,543,180	+		GFF3504	0.32	-0.2
3,543,182	+		GFF3504	0.32	-0.8
3,543,182	+		GFF3504	0.32	+0.9
3,543,182	+		GFF3504	0.32	-1.5
3,543,182	+		GFF3504	0.32	-0.4
3,543,182	+		GFF3504	0.32	+0.6
3,543,182	+		GFF3504	0.32	+0.3
3,543,182	+		GFF3504	0.32	-0.6
3,543,182	+		GFF3504	0.32	-0.8
3,543,188	+		GFF3504	0.32	-0.2
3,543,188	-		GFF3504	0.32	-1.0
3,543,189	+		GFF3504	0.33	-0.2
3,543,190	-		GFF3504	0.33	-0.9
3,543,190	-		GFF3504	0.33	+0.4
3,543,190	-		GFF3504	0.33	+0.8
3,543,190	-		GFF3504	0.33	+0.5
3,543,190	-		GFF3504	0.33	-0.4
3,543,190	-		GFF3504	0.33	-0.8
3,543,190	-		GFF3504	0.33	+1.4
3,543,196	-		GFF3504	0.33	-2.7
3,543,197	-		GFF3504	0.33	+1.0
3,543,218	+		GFF3504	0.35	-1.9
3,543,246	-		GFF3504	0.38	-1.0
3,543,263	-		GFF3504	0.40	-1.4
3,543,265	+		GFF3504	0.40	-2.4
3,543,265	+		GFF3504	0.40	+0.3
3,543,265	+		GFF3504	0.40	+0.7
3,543,273	-		GFF3504	0.41	-0.9
3,543,273	-		GFF3504	0.41	-1.7
3,543,273	-		GFF3504	0.41	-1.6
3,543,299	-		GFF3504	0.44	+1.0
3,543,308	+		GFF3504	0.45	-1.5
3,543,308	+		GFF3504	0.45	-1.1
3,543,308	+		GFF3504	0.45	+1.2
3,543,308	+		GFF3504	0.45	+0.8
3,543,308	+		GFF3504	0.45	+0.2
3,543,308	+		GFF3504	0.45	-0.3
3,543,308	+		GFF3504	0.45	-0.5
3,543,313	+		GFF3504	0.45	+0.3
3,543,314	-		GFF3504	0.45	-1.0
3,543,316	-		GFF3504	0.46	-2.3
3,543,316	-		GFF3504	0.46	+0.4
3,543,316	-		GFF3504	0.46	+0.3
3,543,316	-		GFF3504	0.46	-0.2
3,543,316	-		GFF3504	0.46	+0.9
3,543,316	-		GFF3504	0.46	-1.0
3,543,316	-		GFF3504	0.46	-0.4
3,543,316	-		GFF3504	0.46	+1.8
3,543,316	-		GFF3504	0.46	-0.2
3,543,316	-		GFF3504	0.46	-2.8
3,543,325	+		GFF3504	0.46	+1.7
3,543,333	-		GFF3504	0.47	-1.3
3,543,333	-		GFF3504	0.47	+1.5
3,543,342	+		GFF3504	0.48	-0.5
3,543,344	-		GFF3504	0.48	-0.1
3,543,353	+		GFF3504	0.49	-2.7
3,543,356	-		GFF3504	0.50	+0.5
3,543,361	-		GFF3504	0.50	-0.8
3,543,361	-		GFF3504	0.50	-1.4
3,543,361	-		GFF3504	0.50	+0.7
3,543,361	-		GFF3504	0.50	+0.5
3,543,373	-		GFF3504	0.51	+1.1
3,543,379	-		GFF3504	0.52	-1.0
3,543,403	-		GFF3504	0.54	-1.1
3,543,432	+		GFF3504	0.57	+0.2
3,543,447	-		GFF3504	0.59	+0.3
3,543,448	+		GFF3504	0.59	-0.5
3,543,448	+		GFF3504	0.59	-0.7
3,543,456	-		GFF3504	0.60	+0.7
3,543,456	-		GFF3504	0.60	-0.4
3,543,479	+		GFF3504	0.62	-1.5
3,543,480	+		GFF3504	0.62	+0.9
3,543,480	+		GFF3504	0.62	+0.3
3,543,483	-		GFF3504	0.63	-1.0