Strain Fitness in Sphingobium sp. HT1-2 around GFF3488

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,523,578	-		GFF3486	0.48	+1.0
3,523,612	-		GFF3486	0.55	-0.2
3,523,668	-		GFF3486	0.67	-0.5
3,523,684	-		GFF3486	0.71	+0.6
3,523,692	+		GFF3486	0.72	+0.6
3,523,703	+		GFF3486	0.75	-0.8
3,523,703	+		GFF3486	0.75	-2.4
3,523,703	+		GFF3486	0.75	-0.2
3,523,711	-		GFF3486	0.76	+0.9
3,523,711	-		GFF3486	0.76	-2.6
3,523,711	-		GFF3486	0.76	+0.5
3,523,711	-		GFF3486	0.76	-2.0
3,523,711	-		GFF3486	0.76	+0.5
3,523,738	+		GFF3486	0.82	-0.7
3,523,738	+		GFF3486	0.82	+0.9
3,523,738	+		GFF3486	0.82	-1.0
3,523,738	+		GFF3486	0.82	-2.2
3,523,746	-		GFF3486	0.84	-0.6
3,523,762	-		GFF3486	0.87	-0.6
3,523,767	+		GFF3486	0.88	-0.0
3,523,770	+		GFF3486	0.89	-0.4
3,523,770	-		GFF3486	0.89	+0.4
3,523,773	-		GFF3486	0.90	-0.3
3,523,778	-				-2.0
3,523,778	-				-0.0
3,523,779	+				-0.7
3,523,780	+				-2.0
3,523,780	+				+0.9
3,523,780	+				-0.1
3,523,780	+				+0.2
3,523,780	+				-0.4
3,523,786	+				+1.4
3,523,786	+				-1.2
3,523,788	-				-1.8
3,523,788	-				-0.4
3,523,788	-				-1.0
3,523,788	-				-1.3
3,523,788	-				-1.3
3,523,788	-				+1.0
3,523,788	-				-0.1
3,523,788	-				+0.3
3,523,788	-				+0.4
3,523,788	-				-2.5
3,523,788	-				-0.6
3,523,788	-				-1.0
3,523,788	-				-0.4
3,523,788	-				-0.4
3,523,788	-				-0.5
3,523,790	-				+0.2
3,523,795	-				+0.8
3,523,806	+				+1.2
3,523,814	-				-1.2
3,523,814	-				+1.4
3,523,828	-				-1.5
3,523,836	-				+0.6
3,523,836	-				-1.3
3,523,863	+				-0.3
3,523,863	+				-0.9
3,523,907	+		GFF3487	0.14	+0.3
3,523,938	-		GFF3487	0.19	-0.0
3,523,938	-		GFF3487	0.19	+0.7
3,523,940	+		GFF3487	0.19	+0.2
3,523,942	+		GFF3487	0.19	-0.7
3,523,942	+		GFF3487	0.19	-1.5
3,523,942	+		GFF3487	0.19	-2.0
3,523,942	+		GFF3487	0.19	+1.2
3,523,948	-		GFF3487	0.20	-0.4
3,523,949	+		GFF3487	0.20	-0.8
3,523,949	+		GFF3487	0.20	-0.6
3,523,950	-		GFF3487	0.20	-0.2
3,523,950	-		GFF3487	0.20	-1.4
3,523,950	-		GFF3487	0.20	-0.8
3,523,950	-		GFF3487	0.20	+0.4
3,523,950	-		GFF3487	0.20	+1.2
3,523,973	+		GFF3487	0.24	+0.9
3,523,973	-		GFF3487	0.24	+0.1
3,523,989	+		GFF3487	0.27	-0.7
3,523,993	-		GFF3487	0.27	-0.8
3,524,011	+		GFF3487	0.30	-0.7
3,524,011	+		GFF3487	0.30	-2.2
3,524,019	-		GFF3487	0.31	-0.2
3,524,019	-		GFF3487	0.31	+0.6
3,524,019	-		GFF3487	0.31	-0.9
3,524,038	-		GFF3487	0.34	+0.3
3,524,042	+		GFF3487	0.35	+0.3
3,524,050	-		GFF3487	0.36	+0.1
3,524,107	+		GFF3487	0.45	+0.5
3,524,113	-		GFF3487	0.46	-0.2
3,524,120	+		GFF3487	0.47	-1.9
3,524,125	+		GFF3487	0.48	-0.6
3,524,128	-		GFF3487	0.49	-0.3
3,524,130	+		GFF3487	0.49	+1.5
3,524,138	-		GFF3487	0.50	+1.0
3,524,139	-		GFF3487	0.50	+0.3
3,524,174	-		GFF3487	0.56	+0.6
3,524,204	-		GFF3487	0.61	-0.1
3,524,204	-		GFF3487	0.61	-1.0
3,524,210	+		GFF3487	0.62	-1.2
3,524,219	+		GFF3487	0.63	+0.4
3,524,227	-		GFF3487	0.64	-0.6
3,524,227	-		GFF3487	0.64	-0.8
3,524,227	-		GFF3487	0.64	+0.3
3,524,230	-		GFF3487	0.65	-0.4
3,524,247	+		GFF3487	0.68	-2.7
3,524,249	+		GFF3487	0.68	+0.6
3,524,249	+		GFF3487	0.68	-0.6
3,524,250	-		GFF3487	0.68	-0.5
3,524,257	-		GFF3487	0.69	+1.1
3,524,257	-		GFF3487	0.69	-0.5
3,524,267	-		GFF3487	0.71	-1.9
3,524,269	+		GFF3487	0.71	+0.9
3,524,270	+		GFF3487	0.71	-1.5
3,524,279	-		GFF3487	0.73	+0.5
3,524,289	-		GFF3487	0.74	+0.2
3,524,298	+		GFF3487	0.76	+0.5
3,524,308	+		GFF3487	0.77	+0.5
3,524,313	+		GFF3487	0.78	+0.6
3,524,316	-		GFF3487	0.79	-1.8
3,524,321	-		GFF3487	0.79	-1.1
3,524,347	-		GFF3487	0.83	+0.1
3,524,378	+		GFF3487	0.88	-0.4
3,524,383	+		GFF3487	0.89	-1.7
3,524,383	+		GFF3487	0.89	-0.8
3,524,383	+		GFF3487	0.89	-0.1
3,524,383	+		GFF3487	0.89	-1.4
3,524,383	+		GFF3487	0.89	-0.8
3,524,391	-				-1.7
3,524,391	-				-1.7
3,524,391	-				-0.4
3,524,397	-				-0.0
3,524,397	-				-1.6
3,524,397	-				+1.2
3,524,397	-				+0.5
3,524,425	+				-0.0
3,524,440	+				+0.2
3,524,440	+				-0.6
3,524,440	+				-1.0
3,524,440	+				+0.8
3,524,440	+				-0.3
3,524,445	+				-0.1
3,524,445	+				-0.9
3,524,448	-				-0.4
3,524,451	+				-0.2
3,524,459	-				+0.2
3,524,459	-				+0.4
3,524,460	+				+0.3
3,524,460	+				-0.1
3,524,460	+				-0.0
3,524,464	-				-1.5
3,524,465	+				-2.9
3,524,482	+				-1.3
3,524,487	+				+1.1
3,524,490	-				-0.2
3,524,510	+				-1.1
3,524,510	+				-0.4
3,524,518	-				+0.5
3,524,526	-				-0.4
3,524,561	+				-1.6
3,524,569	-				+0.4
3,524,607	-				+1.0
3,524,618	+		GFF3488	0.11	-0.3
3,524,626	-		GFF3488	0.12	-1.2
3,524,628	+		GFF3488	0.12	-1.3
3,524,628	+		GFF3488	0.12	-0.9
3,524,633	+		GFF3488	0.12	+0.8
3,524,633	+		GFF3488	0.12	-1.4
3,524,636	-		GFF3488	0.13	-3.2
3,524,636	-		GFF3488	0.13	+1.0
3,524,636	-		GFF3488	0.13	-1.4
3,524,636	-		GFF3488	0.13	+1.2
3,524,636	-		GFF3488	0.13	-0.6
3,524,636	-		GFF3488	0.13	+0.2
3,524,636	-		GFF3488	0.13	-1.0
3,524,636	-		GFF3488	0.13	-0.9
3,524,641	-		GFF3488	0.13	-0.2
3,524,641	-		GFF3488	0.13	-0.3
3,524,641	-		GFF3488	0.13	+0.2
3,524,655	+		GFF3488	0.15	-0.8
3,524,660	+		GFF3488	0.15	-2.0
3,524,665	+		GFF3488	0.16	+0.8
3,524,673	-		GFF3488	0.17	+0.2
3,524,724	-		GFF3488	0.22	-1.2
3,524,730	-		GFF3488	0.22	+0.1
3,524,748	+		GFF3488	0.24	-0.0
3,524,767	+		GFF3488	0.26	-0.8
3,524,770	-		GFF3488	0.27	-1.4
3,524,770	-		GFF3488	0.27	-1.0
3,524,780	-		GFF3488	0.28	-1.8
3,524,789	-		GFF3488	0.28	-1.2
3,524,789	-		GFF3488	0.28	-0.5
3,524,813	+		GFF3488	0.31	-0.4
3,524,813	+		GFF3488	0.31	-0.5
3,524,813	+		GFF3488	0.31	+0.1
3,524,814	-		GFF3488	0.31	-1.0
3,524,815	-		GFF3488	0.31	+0.8
3,524,815	-		GFF3488	0.31	-0.9
3,524,818	+		GFF3488	0.31	-1.4
3,524,818	+		GFF3488	0.31	+0.2
3,524,818	+		GFF3488	0.31	-1.0
3,524,821	-		GFF3488	0.32	-1.7
3,524,821	-		GFF3488	0.32	+0.9
3,524,821	-		GFF3488	0.32	+0.3
3,524,837	+		GFF3488	0.33	-0.3
3,524,840	-		GFF3488	0.34	+1.4
3,524,845	-		GFF3488	0.34	+0.3
3,524,870	-		GFF3488	0.37	-0.1
3,524,903	+		GFF3488	0.40	-1.0
3,524,903	+		GFF3488	0.40	+0.4
3,524,903	+		GFF3488	0.40	+0.8
3,524,903	+		GFF3488	0.40	+0.9
3,524,903	+		GFF3488	0.40	-1.4
3,524,903	+		GFF3488	0.40	-0.3
3,524,903	+		GFF3488	0.40	-0.9
3,524,903	+		GFF3488	0.40	+0.6
3,524,908	+		GFF3488	0.41	+0.2
3,524,908	+		GFF3488	0.41	+0.4
3,524,908	+		GFF3488	0.41	+0.8
3,524,908	+		GFF3488	0.41	-1.1
3,524,908	+		GFF3488	0.41	-1.6
3,524,911	-		GFF3488	0.41	-1.3
3,524,911	-		GFF3488	0.41	-0.1
3,524,911	-		GFF3488	0.41	+0.6
3,524,911	-		GFF3488	0.41	+0.6
3,524,911	-		GFF3488	0.41	+0.9
3,524,916	-		GFF3488	0.42	+0.3
3,524,916	-		GFF3488	0.42	-0.5
3,524,916	-		GFF3488	0.42	-0.4
3,524,916	-		GFF3488	0.42	+0.8
3,524,916	-		GFF3488	0.42	-0.5
3,524,916	-		GFF3488	0.42	-0.4
3,524,923	+		GFF3488	0.42	-0.0
3,524,943	+		GFF3488	0.44	-0.9
3,524,951	+		GFF3488	0.45	-0.3
3,524,951	+		GFF3488	0.45	-1.4
3,524,951	-		GFF3488	0.45	-1.7
3,524,959	-		GFF3488	0.46	-1.4
3,524,974	+		GFF3488	0.48	+1.0
3,524,974	+		GFF3488	0.48	+0.2
3,524,974	+		GFF3488	0.48	+0.1
3,524,982	-		GFF3488	0.48	+0.1
3,524,987	-		GFF3488	0.49	+1.0
3,525,017	+		GFF3488	0.52	+0.2
3,525,025	-		GFF3488	0.53	-0.4
3,525,025	-		GFF3488	0.53	-0.6
3,525,025	-		GFF3488	0.53	-0.1
3,525,025	-		GFF3488	0.53	+0.5
3,525,036	+		GFF3488	0.54	-0.1
3,525,040	-		GFF3488	0.54	+0.6
3,525,048	+		GFF3488	0.55	-0.6
3,525,068	+		GFF3488	0.57	-0.1
3,525,071	-		GFF3488	0.58	-0.5
3,525,071	-		GFF3488	0.58	-0.0
3,525,076	-		GFF3488	0.58	+1.0
3,525,089	+		GFF3488	0.59	-0.7
3,525,089	+		GFF3488	0.59	-1.6
3,525,089	+		GFF3488	0.59	-0.2
3,525,089	+		GFF3488	0.59	-0.9
3,525,089	+		GFF3488	0.59	-2.2
3,525,089	+		GFF3488	0.59	+0.2
3,525,089	+		GFF3488	0.59	+1.1
3,525,089	-		GFF3488	0.59	-0.8
3,525,097	-		GFF3488	0.60	-1.2
3,525,097	-		GFF3488	0.60	-0.3
3,525,097	-		GFF3488	0.60	+0.0
3,525,097	-		GFF3488	0.60	+0.2
3,525,101	+		GFF3488	0.61	-2.2
3,525,152	-		GFF3488	0.66	-0.8
3,525,171	+		GFF3488	0.68	+0.4
3,525,171	+		GFF3488	0.68	+0.4
3,525,179	-		GFF3488	0.69	-1.3
3,525,179	-		GFF3488	0.69	+0.5
3,525,180	-		GFF3488	0.69	+0.1
3,525,184	+		GFF3488	0.69	-1.1
3,525,192	-		GFF3488	0.70	-1.0
3,525,195	+		GFF3488	0.70	-0.2
3,525,195	+		GFF3488	0.70	+1.2
3,525,227	+		GFF3488	0.74	-0.3
3,525,237	+		GFF3488	0.75	-1.9
3,525,247	-		GFF3488	0.76	-0.0
3,525,281	+		GFF3488	0.79	-0.6
3,525,289	-		GFF3488	0.80	+0.2
3,525,289	-		GFF3488	0.80	-0.1
3,525,297	-		GFF3488	0.81	-1.1
3,525,329	-		GFF3488	0.84	+1.4
3,525,335	+		GFF3488	0.85	-1.2
3,525,401	+				+0.9
3,525,409	-				-2.5
3,525,409	-				-0.4
3,525,409	-				-0.0
3,525,409	-				-1.8
3,525,414	+				-0.4
3,525,435	-				-0.2
3,525,451	+				-0.5
3,525,457	-				+0.2
3,525,489	+				-0.3
3,525,489	+				-0.9
3,525,495	+				+0.1
3,525,496	-				+1.3
3,525,497	+				+0.2
3,525,497	-				-0.1
3,525,497	-				-1.2
3,525,502	-				+0.7
3,525,518	-				-0.4
3,525,591	-				-2.0
3,525,637	-				-2.2
3,525,637	-				+0.1
3,525,637	-				+1.1
3,525,642	-				-0.0
3,525,732	+		GFF3489	0.14	+0.2
3,525,737	+		GFF3489	0.14	-0.3
3,525,742	+		GFF3489	0.15	-0.1
3,525,742	+		GFF3489	0.15	+1.2
3,525,749	+		GFF3489	0.16	+1.8
3,525,750	-		GFF3489	0.16	+1.6
3,525,755	-		GFF3489	0.16	+0.2
3,525,787	-		GFF3489	0.20	+0.5
3,525,793	-		GFF3489	0.21	+0.2
3,525,796	-		GFF3489	0.21	-0.4
3,525,796	-		GFF3489	0.21	-0.3
3,525,806	-		GFF3489	0.22	-0.2
3,525,810	+		GFF3489	0.23	+0.9
3,525,810	+		GFF3489	0.23	-0.6
3,525,810	+		GFF3489	0.23	+0.5
3,525,810	+		GFF3489	0.23	-1.9
3,525,810	+		GFF3489	0.23	+0.9
3,525,810	+		GFF3489	0.23	-1.0
3,525,810	+		GFF3489	0.23	-0.6
3,525,810	+		GFF3489	0.23	+0.1
3,525,810	+		GFF3489	0.23	-2.2
3,525,812	+		GFF3489	0.23	-2.1
3,525,812	+		GFF3489	0.23	+0.3
3,525,812	+		GFF3489	0.23	-2.3
3,525,812	+		GFF3489	0.23	-0.4
3,525,812	+		GFF3489	0.23	-0.0
3,525,812	+		GFF3489	0.23	-0.3
3,525,812	+		GFF3489	0.23	-0.1
3,525,812	+		GFF3489	0.23	+0.5
3,525,812	+		GFF3489	0.23	-1.4
3,525,812	+		GFF3489	0.23	-1.1
3,525,812	+		GFF3489	0.23	+0.0
3,525,812	+		GFF3489	0.23	+0.4
3,525,812	+		GFF3489	0.23	+0.4
3,525,812	+		GFF3489	0.23	+0.2
3,525,813	-		GFF3489	0.23	-0.3
3,525,813	-		GFF3489	0.23	+0.4
3,525,817	+		GFF3489	0.23	-1.3
3,525,817	+		GFF3489	0.23	-1.2
3,525,818	-		GFF3489	0.24	-1.0
3,525,818	-		GFF3489	0.24	-0.5
3,525,818	-		GFF3489	0.24	-0.3
3,525,818	-		GFF3489	0.24	-0.3
3,525,818	-		GFF3489	0.24	-0.2
3,525,818	-		GFF3489	0.24	-0.9
3,525,820	-		GFF3489	0.24	-0.5
3,525,820	-		GFF3489	0.24	-1.1
3,525,820	-		GFF3489	0.24	-0.4
3,525,820	-		GFF3489	0.24	+0.7
3,525,820	-		GFF3489	0.24	-1.5
3,525,820	-		GFF3489	0.24	-0.8
3,525,820	-		GFF3489	0.24	+0.3
3,525,820	-		GFF3489	0.24	-0.2
3,525,820	-		GFF3489	0.24	+0.6
3,525,820	-		GFF3489	0.24	-1.1
3,525,822	+		GFF3489	0.24	+0.8
3,525,864	+		GFF3489	0.29	+0.5
3,525,876	+		GFF3489	0.30	-0.4
3,525,876	+		GFF3489	0.30	+1.5
3,525,876	+		GFF3489	0.30	-0.1
3,525,876	+		GFF3489	0.30	+0.2
3,525,884	-		GFF3489	0.31	+0.1
3,525,884	-		GFF3489	0.31	+1.5
3,525,886	+		GFF3489	0.31	-0.5
3,525,886	+		GFF3489	0.31	-1.7
3,525,886	+		GFF3489	0.31	+0.6
3,525,894	+		GFF3489	0.32	-0.2
3,525,894	-		GFF3489	0.32	-0.7
3,525,917	+		GFF3489	0.35	-1.2
3,525,917	+		GFF3489	0.35	-0.2
3,525,924	+		GFF3489	0.35	+0.7
3,525,925	-		GFF3489	0.36	+1.7
3,525,947	-		GFF3489	0.38	-0.0
3,525,952	-		GFF3489	0.39	+0.4
3,525,964	+		GFF3489	0.40	+0.5
3,525,971	-		GFF3489	0.41	-0.8
3,525,973	+		GFF3489	0.41	+1.7
3,525,974	+		GFF3489	0.41	+1.2
3,525,979	+		GFF3489	0.42	-0.4
3,525,979	+		GFF3489	0.42	+0.5
3,525,982	-		GFF3489	0.42	+1.3
3,525,993	+		GFF3489	0.43	+0.1
3,525,993	+		GFF3489	0.43	-0.1
3,525,998	+		GFF3489	0.44	+0.7
3,526,001	-		GFF3489	0.44	-1.3
3,526,001	-		GFF3489	0.44	+0.3
3,526,006	-		GFF3489	0.45	-0.2
3,526,006	-		GFF3489	0.45	-0.7
3,526,006	-		GFF3489	0.45	-2.2
3,526,006	-		GFF3489	0.45	-1.5
3,526,034	+		GFF3489	0.48	-1.3
3,526,034	+		GFF3489	0.48	+1.2
3,526,034	+		GFF3489	0.48	+1.6
3,526,034	+		GFF3489	0.48	-0.5
3,526,042	-		GFF3489	0.49	-0.1
3,526,056	+		GFF3489	0.50	-0.4
3,526,081	-		GFF3489	0.53	-0.5
3,526,112	+		GFF3489	0.57	+0.7
3,526,112	+		GFF3489	0.57	+1.2
3,526,120	-		GFF3489	0.58	-0.1
3,526,120	-		GFF3489	0.58	+1.9
3,526,120	-		GFF3489	0.58	+0.1
3,526,120	-		GFF3489	0.58	-1.7
3,526,164	+		GFF3489	0.63	+1.1
3,526,171	-		GFF3489	0.63	-0.5
3,526,173	-		GFF3489	0.64	+0.3
3,526,193	+		GFF3489	0.66	+0.2
3,526,193	+		GFF3489	0.66	+0.1
3,526,201	-		GFF3489	0.67	-1.9
3,526,252	-		GFF3489	0.73	+0.6
3,526,321	+		GFF3489	0.80	-0.1
3,526,341	+		GFF3489	0.83	-0.8
3,526,341	+		GFF3489	0.83	-1.5
3,526,349	-		GFF3489	0.84	+0.4
3,526,358	+		GFF3489	0.85	-0.6
3,526,366	-		GFF3489	0.85	-0.9
3,526,426	+				+0.2