Strain Fitness in Sphingobium sp. HT1-2 around GFF3438

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,477,943	+		GFF3436	0.89	-0.0
3,477,943	+		GFF3436	0.89	-0.9
3,477,965	-				-0.2
3,478,060	+				-0.9
3,478,065	+				-1.6
3,478,138	+				+0.3
3,478,146	-				-1.1
3,478,166	+				-0.4
3,478,166	+				+0.5
3,478,250	+				-0.8
3,478,250	+				-0.4
3,478,250	+				+0.0
3,478,250	+				-1.6
3,478,250	+				+1.2
3,478,250	+				+0.2
3,478,250	+				+1.1
3,478,250	+				-0.4
3,478,250	+				-1.5
3,478,250	+				+0.3
3,478,250	+				+0.6
3,478,250	+				-1.3
3,478,250	+				-1.6
3,478,258	-		GFF3437	0.11	-1.2
3,478,258	-		GFF3437	0.11	-1.5
3,478,258	-		GFF3437	0.11	-0.7
3,478,258	-		GFF3437	0.11	-1.5
3,478,258	-		GFF3437	0.11	+0.3
3,478,258	-		GFF3437	0.11	+0.3
3,478,258	-		GFF3437	0.11	-0.9
3,478,258	-		GFF3437	0.11	-1.2
3,478,258	-		GFF3437	0.11	-0.6
3,478,258	-		GFF3437	0.11	+1.4
3,478,258	-		GFF3437	0.11	+0.4
3,478,258	-		GFF3437	0.11	+0.3
3,478,258	-		GFF3437	0.11	-0.4
3,478,280	-		GFF3437	0.14	-0.2
3,478,280	-		GFF3437	0.14	-0.6
3,478,283	+		GFF3437	0.14	-1.4
3,478,297	+		GFF3437	0.16	+0.5
3,478,298	-		GFF3437	0.16	-0.6
3,478,312	+		GFF3437	0.18	+0.3
3,478,312	+		GFF3437	0.18	-1.2
3,478,315	-		GFF3437	0.18	+0.4
3,478,317	+		GFF3437	0.19	-0.9
3,478,322	+		GFF3437	0.19	-1.1
3,478,325	-		GFF3437	0.20	+0.7
3,478,327	+		GFF3437	0.20	+0.9
3,478,330	-		GFF3437	0.20	-1.5
3,478,334	+		GFF3437	0.21	+0.0
3,478,335	-		GFF3437	0.21	+0.1
3,478,340	+		GFF3437	0.22	-1.1
3,478,349	+		GFF3437	0.23	+0.2
3,478,383	+		GFF3437	0.27	-1.0
3,478,383	+		GFF3437	0.27	+0.7
3,478,383	+		GFF3437	0.27	-1.2
3,478,383	+		GFF3437	0.27	+0.5
3,478,383	+		GFF3437	0.27	+0.4
3,478,383	+		GFF3437	0.27	-0.4
3,478,383	+		GFF3437	0.27	+0.5
3,478,383	+		GFF3437	0.27	-2.5
3,478,383	+		GFF3437	0.27	-0.7
3,478,383	+		GFF3437	0.27	-0.8
3,478,383	+		GFF3437	0.27	-1.5
3,478,383	+		GFF3437	0.27	-0.0
3,478,391	-		GFF3437	0.28	+0.6
3,478,391	-		GFF3437	0.28	+0.1
3,478,391	-		GFF3437	0.28	+0.6
3,478,391	-		GFF3437	0.28	-0.7
3,478,391	-		GFF3437	0.28	-1.6
3,478,393	+		GFF3437	0.29	-0.4
3,478,401	+		GFF3437	0.30	-1.4
3,478,401	+		GFF3437	0.30	-1.5
3,478,409	-		GFF3437	0.31	-0.5
3,478,409	-		GFF3437	0.31	-1.9
3,478,409	-		GFF3437	0.31	-1.1
3,478,409	-		GFF3437	0.31	-0.3
3,478,411	+		GFF3437	0.31	+0.4
3,478,411	+		GFF3437	0.31	-2.8
3,478,411	+		GFF3437	0.31	+0.7
3,478,411	+		GFF3437	0.31	-0.1
3,478,411	+		GFF3437	0.31	-1.0
3,478,411	+		GFF3437	0.31	-0.9
3,478,416	+		GFF3437	0.32	-0.7
3,478,419	-		GFF3437	0.32	-0.7
3,478,419	-		GFF3437	0.32	-1.0
3,478,419	-		GFF3437	0.32	+1.8
3,478,419	-		GFF3437	0.32	+0.5
3,478,419	-		GFF3437	0.32	-0.2
3,478,421	+		GFF3437	0.32	-0.4
3,478,426	+		GFF3437	0.33	+0.8
3,478,432	-		GFF3437	0.34	-0.9
3,478,434	-		GFF3437	0.34	-0.7
3,478,448	+		GFF3437	0.36	+0.2
3,478,448	+		GFF3437	0.36	-2.2
3,478,448	+		GFF3437	0.36	-0.4
3,478,456	-		GFF3437	0.37	-0.5
3,478,456	-		GFF3437	0.37	-0.2
3,478,458	+		GFF3437	0.37	-0.3
3,478,458	+		GFF3437	0.37	-0.6
3,478,461	-		GFF3437	0.38	+0.1
3,478,466	+		GFF3437	0.38	-1.9
3,478,467	-		GFF3437	0.38	+0.6
3,478,472	-		GFF3437	0.39	-2.1
3,478,509	+		GFF3437	0.44	-1.2
3,478,509	+		GFF3437	0.44	-0.7
3,478,517	-		GFF3437	0.45	-1.8
3,478,517	-		GFF3437	0.45	-0.1
3,478,563	+		GFF3437	0.51	-0.1
3,478,566	-		GFF3437	0.51	+1.2
3,478,572	-		GFF3437	0.52	+1.9
3,478,587	+		GFF3437	0.54	+1.2
3,478,600	+		GFF3437	0.56	-0.6
3,478,600	+		GFF3437	0.56	+0.5
3,478,600	+		GFF3437	0.56	+1.2
3,478,615	+		GFF3437	0.58	+1.2
3,478,618	+		GFF3437	0.58	-0.2
3,478,634	+		GFF3437	0.60	-0.5
3,478,634	+		GFF3437	0.60	-0.6
3,478,642	-		GFF3437	0.61	-1.3
3,478,674	+		GFF3437	0.65	+0.4
3,478,682	-		GFF3437	0.66	+1.2
3,478,683	-		GFF3437	0.67	-1.4
3,478,772	-		GFF3437	0.78	+0.2
3,478,794	-		GFF3437	0.81	-0.2
3,478,800	+		GFF3437	0.82	+1.4
3,478,807	+		GFF3437	0.83	+0.2
3,478,807	+		GFF3437	0.83	-0.2
3,478,807	+		GFF3437	0.83	+0.2
3,478,807	+		GFF3437	0.83	-1.3
3,478,815	-		GFF3437	0.84	-1.6
3,478,815	-		GFF3437	0.84	-1.3
3,478,857	-		GFF3437	0.89	-1.0
3,478,857	-		GFF3437	0.89	-0.4
3,478,858	-		GFF3437	0.89	+0.0
3,478,858	-		GFF3437	0.89	+1.2
3,478,899	-				-0.1
3,478,899	-				-1.0
3,478,899	-				+1.0
3,478,920	-				+0.8
3,478,926	+				+0.1
3,478,940	-				+1.0
3,478,988	+		GFF3438	0.30	-0.3
3,478,996	-		GFF3438	0.35	-0.5
3,478,996	-		GFF3438	0.35	-0.0
3,478,996	-		GFF3438	0.35	-0.6
3,478,996	-		GFF3438	0.35	-2.4
3,479,011	-		GFF3438	0.45	+0.2
3,479,011	-		GFF3438	0.45	-1.1
3,479,011	-		GFF3438	0.45	-0.4
3,479,030	-		GFF3438	0.58	-0.6
3,479,079	+				+0.5
3,479,087	-				-0.7
3,479,090	+				-0.9
3,479,095	+				+1.1
3,479,096	+				-1.5
3,479,104	-				+0.7
3,479,104	-				+1.4
3,479,139	-				-0.1
3,479,158	+				+0.9
3,479,158	+				+0.8
3,479,166	-				-1.0
3,479,178	-				-0.7
3,479,230	+				-0.1
3,479,230	+				-1.2
3,479,235	+				+0.2
3,479,236	-				+0.1
3,479,238	+				-0.2
3,479,238	-				-1.2
3,479,238	-				-2.7
3,479,245	-				-1.0
3,479,246	-				-1.2
3,479,253	-				-2.7
3,479,292	+		GFF3439	0.18	-1.4
3,479,294	+		GFF3439	0.19	-1.9
3,479,294	+		GFF3439	0.19	-1.3
3,479,294	+		GFF3439	0.19	-1.9
3,479,294	+		GFF3439	0.19	-0.4
3,479,294	+		GFF3439	0.19	-1.9
3,479,294	+		GFF3439	0.19	+0.7
3,479,302	-		GFF3439	0.23	-1.4
3,479,302	-		GFF3439	0.23	-1.9
3,479,302	-		GFF3439	0.23	-1.3
3,479,302	-		GFF3439	0.23	-1.3
3,479,302	-		GFF3439	0.23	-1.6
3,479,327	+		GFF3439	0.33	-1.6
3,479,327	+		GFF3439	0.33	-1.8
3,479,329	-		GFF3439	0.34	-1.7
3,479,335	-		GFF3439	0.37	-1.3
3,479,335	-		GFF3439	0.37	-1.9
3,479,335	-		GFF3439	0.37	-1.3
3,479,375	+		GFF3439	0.54	-0.1
3,479,381	+		GFF3439	0.56	-0.0
3,479,432	+		GFF3439	0.78	-2.0
3,479,471	+				+0.5
3,479,476	+				-0.3
3,479,476	+				-0.3
3,479,483	+				+0.5
3,479,483	+				+1.2
3,479,483	+				-2.3
3,479,483	+				+0.7
3,479,484	-				-2.0
3,479,491	-				-0.4
3,479,491	-				-1.2
3,479,491	-				-1.6
3,479,491	-				-2.9
3,479,560	-		GFF3440	0.11	-2.5
3,479,562	+		GFF3440	0.11	-2.2
3,479,562	+		GFF3440	0.11	+0.1
3,479,562	+		GFF3440	0.11	-2.2
3,479,562	+		GFF3440	0.11	-3.4
3,479,570	-		GFF3440	0.12	-1.7
3,479,570	-		GFF3440	0.12	-1.8
3,479,570	-		GFF3440	0.12	-1.3
3,479,570	-		GFF3440	0.12	-1.5
3,479,570	-		GFF3440	0.12	-1.2
3,479,570	-		GFF3440	0.12	-2.2
3,479,574	+		GFF3440	0.13	-1.1
3,479,581	-		GFF3440	0.14	-2.2
3,479,592	+		GFF3440	0.16	-1.9
3,479,600	-		GFF3440	0.17	-1.8
3,479,610	-		GFF3440	0.18	-1.4
3,479,700	-		GFF3440	0.32	-2.5
3,479,712	+		GFF3440	0.33	-2.3
3,479,732	+		GFF3440	0.36	-2.5
3,479,751	+		GFF3440	0.39	+0.6
3,479,758	+		GFF3440	0.40	-2.6
3,479,758	-		GFF3440	0.40	-0.1
3,479,759	+		GFF3440	0.40	-1.4
3,479,777	+		GFF3440	0.43	-2.3
3,479,805	-		GFF3440	0.47	-2.2
3,479,834	+		GFF3440	0.52	-1.4
3,479,872	+		GFF3440	0.57	-1.5
3,479,880	-		GFF3440	0.58	-2.3
3,479,880	-		GFF3440	0.58	-2.4
3,479,891	+		GFF3440	0.60	-1.7
3,479,910	+		GFF3440	0.63	-1.9
3,479,949	-		GFF3440	0.69	-0.2
3,479,963	+		GFF3440	0.71	-0.8
3,479,971	-		GFF3440	0.72	-1.8
3,479,983	+		GFF3440	0.74	-2.8
3,479,983	+		GFF3440	0.74	-0.4
3,479,983	+		GFF3440	0.74	-0.3
3,479,983	+		GFF3440	0.74	-2.4
3,479,983	+		GFF3440	0.74	-2.2
3,479,988	+		GFF3440	0.74	-2.2
3,479,991	-		GFF3440	0.75	-1.9
3,479,991	-		GFF3440	0.75	-2.6
3,479,991	-		GFF3440	0.75	-1.6
3,479,991	-		GFF3440	0.75	-2.9
3,480,005	+		GFF3440	0.77	-1.2
3,480,006	-		GFF3440	0.77	-2.2
3,480,011	+		GFF3440	0.78	-2.2
3,480,050	+		GFF3440	0.84	-1.3
3,480,050	+		GFF3440	0.84	-2.0
3,480,058	-		GFF3440	0.85	-2.3
3,480,058	-		GFF3440	0.85	-1.6
3,480,058	-		GFF3440	0.85	-1.3
3,480,058	-		GFF3440	0.85	-2.5
3,480,063	-		GFF3440	0.85	-1.3
3,480,063	-		GFF3440	0.85	-1.9
3,480,064	+		GFF3440	0.86	-0.6
3,480,064	+		GFF3440	0.86	-0.0
3,480,072	-		GFF3440	0.87	-2.8