Strain Fitness in Sphingobium sp. HT1-2 around GFF3377

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,419,302	+		GFF3375	0.80	-0.1
3,419,308	+		GFF3375	0.81	-1.7
3,419,308	+		GFF3375	0.81	-0.5
3,419,310	-		GFF3375	0.81	+0.8
3,419,310	-		GFF3375	0.81	-0.7
3,419,310	-		GFF3375	0.81	+0.5
3,419,310	-		GFF3375	0.81	+0.6
3,419,316	-		GFF3375	0.82	+0.2
3,419,323	+		GFF3375	0.83	+1.8
3,419,348	+		GFF3375	0.86	-0.6
3,419,358	+		GFF3375	0.87	-0.6
3,419,369	+		GFF3375	0.89	+0.7
3,419,377	-		GFF3375	0.90	+1.2
3,419,379	+		GFF3375	0.90	+1.1
3,419,389	-				+0.7
3,419,421	+				-2.2
3,419,421	+				+0.7
3,419,421	+				-1.6
3,419,429	-				+0.7
3,419,465	+				+1.2
3,419,470	+				+0.6
3,419,497	+				-0.1
3,419,515	+				-1.3
3,419,520	+				+0.6
3,419,544	+		GFF3376	0.11	+0.2
3,419,557	+		GFF3376	0.14	+0.3
3,419,557	+		GFF3376	0.14	-0.6
3,419,557	+		GFF3376	0.14	-1.3
3,419,557	+		GFF3376	0.14	-2.5
3,419,558	+		GFF3376	0.14	+0.1
3,419,559	-		GFF3376	0.14	+0.4
3,419,565	-		GFF3376	0.15	+1.2
3,419,577	+		GFF3376	0.17	+0.5
3,419,587	-		GFF3376	0.18	-1.8
3,419,589	+		GFF3376	0.19	+1.5
3,419,597	-		GFF3376	0.20	+0.2
3,419,646	+		GFF3376	0.28	+0.2
3,419,646	+		GFF3376	0.28	-0.6
3,419,675	+		GFF3376	0.33	+0.2
3,419,675	+		GFF3376	0.33	-0.5
3,419,676	-		GFF3376	0.33	+0.9
3,419,683	-		GFF3376	0.34	-0.0
3,419,733	-		GFF3376	0.42	-2.4
3,419,771	+		GFF3376	0.48	+0.3
3,419,779	-		GFF3376	0.49	+0.5
3,419,782	+		GFF3376	0.50	-1.7
3,419,783	+		GFF3376	0.50	-1.4
3,419,790	-		GFF3376	0.51	+1.4
3,419,790	-		GFF3376	0.51	-0.6
3,419,800	+		GFF3376	0.53	+2.2
3,419,805	+		GFF3376	0.53	+1.8
3,419,810	+		GFF3376	0.54	+0.1
3,419,824	-		GFF3376	0.57	+1.3
3,419,828	+		GFF3376	0.57	+0.2
3,419,913	+		GFF3376	0.71	-1.0
3,419,913	+		GFF3376	0.71	-2.0
3,419,921	-		GFF3376	0.72	-1.5
3,419,921	-		GFF3376	0.72	+0.8
3,419,921	-		GFF3376	0.72	+1.1
3,419,947	+		GFF3376	0.76	+0.9
3,419,955	-		GFF3376	0.78	+0.5
3,419,986	+		GFF3376	0.83	+1.0
3,419,994	-		GFF3376	0.84	+1.0
3,419,994	-		GFF3376	0.84	+1.0
3,420,018	+		GFF3376	0.88	+0.8
3,420,022	+		GFF3376	0.88	-0.4
3,420,025	-		GFF3376	0.89	-0.3
3,420,051	+				+0.3
3,420,051	+				+0.8
3,420,056	+				-0.3
3,420,122	+				+0.9
3,420,122	+				+0.4
3,420,130	-				+0.2
3,420,181	-				+0.4
3,420,186	-				+0.5
3,420,186	-				+0.3
3,420,186	-				-0.1
3,420,216	-				+0.3
3,420,218	+				+0.1
3,420,218	+				+0.8
3,420,235	-				-0.2
3,420,236	-				-0.3
3,420,240	+				-1.5
3,420,253	-				+0.8
3,420,255	+				-1.2
3,420,263	-				+0.4
3,420,263	-				+0.8
3,420,263	-				+0.5
3,420,263	-				-0.7
3,420,278	+				-0.4
3,420,311	+				+0.5
3,420,311	+				+0.1
3,420,317	-				+0.5
3,420,319	-				-1.2
3,420,319	-				-2.8
3,420,332	+				+0.7
3,420,334	+		GFF3377	0.10	+1.8
3,420,334	+		GFF3377	0.10	-1.6
3,420,334	+		GFF3377	0.10	-1.4
3,420,334	+		GFF3377	0.10	+0.1
3,420,342	-		GFF3377	0.13	+0.3
3,420,342	-		GFF3377	0.13	-0.2
3,420,342	-		GFF3377	0.13	+1.1
3,420,342	-		GFF3377	0.13	+0.3
3,420,342	-		GFF3377	0.13	+0.7
3,420,351	+		GFF3377	0.16	-0.5
3,420,362	+		GFF3377	0.20	-0.6
3,420,365	-		GFF3377	0.21	+1.0
3,420,368	+		GFF3377	0.22	+0.9
3,420,370	-		GFF3377	0.22	-0.2
3,420,402	-		GFF3377	0.33	+0.3
3,420,415	+		GFF3377	0.37	+0.8
3,420,420	+		GFF3377	0.39	+0.8
3,420,425	+		GFF3377	0.40	+0.2
3,420,465	-		GFF3377	0.53	+1.4
3,420,497	+		GFF3377	0.64	+0.3
3,420,505	-		GFF3377	0.66	+0.8
3,420,505	-		GFF3377	0.66	+0.7
3,420,602	+				+0.3
3,420,602	+				+1.0
3,420,602	+				+0.2
3,420,602	+				-0.8
3,420,602	+				-0.1
3,420,602	+				-1.2
3,420,602	+				+1.4
3,420,604	+				+0.5
3,420,604	+				-0.3
3,420,605	-				+0.6
3,420,605	-				+0.2
3,420,610	-				-0.2
3,420,610	-				-0.2
3,420,610	-				-2.0
3,420,610	-				-1.5
3,420,610	-				-0.3
3,420,610	-				+1.2
3,420,610	-				-1.4
3,420,610	-				+1.0
3,420,612	-				+0.3
3,420,617	-				+0.9
3,420,649	+				+0.0
3,420,662	-				-1.6
3,420,671	+				+1.1
3,420,671	+				+1.1
3,420,676	+				+0.1
3,420,676	+				+1.2
3,420,676	+				+0.5
3,420,679	-				-1.3
3,420,680	-				-0.9
3,420,682	+				+0.4
3,420,682	-				-1.3
3,420,684	-				-0.0
3,420,684	-				-0.1
3,420,684	-				+0.7
3,420,695	-				+0.6
3,420,763	+				-1.1
3,420,765	+				+0.8
3,420,772	-				+0.1
3,420,772	-				+0.5
3,420,773	-				+0.5
3,420,775	+				-0.3
3,420,783	-				+1.1
3,420,783	-				+0.6
3,420,785	+				+1.3
3,420,785	+				-0.8
3,420,788	-				+1.2
3,420,788	-				+1.0
3,420,788	-				-0.9
3,420,790	+				+0.1
3,420,790	+				+0.7
3,420,790	+				-1.1
3,420,790	+				-0.1
3,420,790	+				+0.2
3,420,790	+				+0.9
3,420,790	+				-1.3
3,420,790	+				-0.8
3,420,790	+				+1.4
3,420,790	+				+0.3
3,420,790	+				-1.7
3,420,790	+				+0.1
3,420,790	+				+0.1
3,420,790	+				+0.2
3,420,791	+				+0.7
3,420,791	+				+0.1
3,420,798	-				+0.4
3,420,798	-				-0.0
3,420,798	-				-0.9
3,420,798	-				+0.4
3,420,798	-				+0.3
3,420,798	-				-1.2
3,420,799	-				-0.4
3,420,824	-				-0.0
3,420,856	+				+0.4
3,420,864	-		GFF3378	0.11	-2.2
3,420,987	-		GFF3378	0.50	-0.3
3,421,012	-		GFF3378	0.58	+0.4
3,421,012	-		GFF3378	0.58	+0.9
3,421,026	-		GFF3378	0.62	-0.4
3,421,026	-		GFF3378	0.62	+0.3
3,421,028	+		GFF3378	0.63	+1.3
3,421,036	-		GFF3378	0.65	+0.9
3,421,036	-		GFF3378	0.65	+0.1
3,421,059	+		GFF3378	0.72	+0.5
3,421,067	-		GFF3378	0.75	+0.1
3,421,140	-				+0.8
3,421,154	+				+0.9
3,421,160	+				+0.8
3,421,160	+				-1.6
3,421,160	+				-1.4
3,421,182	-				+0.3
3,421,195	-				+1.0
3,421,209	+				+0.2
3,421,210	-				+1.4
3,421,215	-				+1.0
3,421,215	-				+0.4
3,421,217	-				+1.0
3,421,217	-				-0.2
3,421,217	-				-0.9
3,421,217	-				-0.3
3,421,224	+				+1.0
3,421,231	+				+1.0
3,421,231	+				+1.4
3,421,231	+				+0.6
3,421,232	-				-1.5
3,421,290	+				+0.6
3,421,405	+				+1.4
3,421,422	-				+0.1
3,421,458	+				-0.3
3,421,466	-				+0.2
3,421,483	-		GFF3379	0.18	+0.5
3,421,483	-		GFF3379	0.18	-0.1
3,421,517	+		GFF3379	0.33	-0.1
3,421,523	-		GFF3379	0.36	-0.1
3,421,525	-		GFF3379	0.36	+0.6
3,421,525	-		GFF3379	0.36	-1.0
3,421,525	-		GFF3379	0.36	+0.2
3,421,527	+		GFF3379	0.37	+0.6
3,421,527	+		GFF3379	0.37	-0.1
3,421,527	+		GFF3379	0.37	+0.6
3,421,527	+		GFF3379	0.37	-1.7
3,421,535	+		GFF3379	0.41	+0.6
3,421,535	-		GFF3379	0.41	+0.2
3,421,535	-		GFF3379	0.41	-0.7
3,421,535	-		GFF3379	0.41	+0.9
3,421,535	-		GFF3379	0.41	+1.1
3,421,535	-		GFF3379	0.41	-0.4
3,421,550	-		GFF3379	0.48	-1.2
3,421,582	+		GFF3379	0.62	+1.2
3,421,605	+		GFF3379	0.73	-0.5