Strain Fitness in Sphingobium sp. HT1-2 around GFF3236

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,289,962	+		GFF3235	0.54	+0.4
3,289,962	+		GFF3235	0.54	-1.0
3,289,970	-		GFF3235	0.54	-1.0
3,289,972	+		GFF3235	0.54	-2.6
3,289,981	-		GFF3235	0.55	-0.0
3,289,989	+		GFF3235	0.55	+0.6
3,289,997	-		GFF3235	0.56	+0.3
3,289,997	-		GFF3235	0.56	+0.2
3,290,002	-		GFF3235	0.56	+0.6
3,290,005	+		GFF3235	0.56	-0.4
3,290,005	+		GFF3235	0.56	+1.1
3,290,005	+		GFF3235	0.56	+0.2
3,290,005	+		GFF3235	0.56	-0.3
3,290,006	-		GFF3235	0.56	+0.5
3,290,007	-		GFF3235	0.56	-2.5
3,290,024	+		GFF3235	0.57	-0.2
3,290,024	+		GFF3235	0.57	-0.1
3,290,029	+		GFF3235	0.57	-0.7
3,290,029	+		GFF3235	0.57	-0.6
3,290,032	-		GFF3235	0.57	-1.5
3,290,032	-		GFF3235	0.57	+0.1
3,290,043	+		GFF3235	0.58	-0.3
3,290,045	+		GFF3235	0.58	-2.1
3,290,045	+		GFF3235	0.58	+0.3
3,290,069	+		GFF3235	0.59	-1.2
3,290,073	+		GFF3235	0.59	-0.3
3,290,094	+		GFF3235	0.60	-1.3
3,290,113	-		GFF3235	0.61	+0.4
3,290,125	-		GFF3235	0.62	+1.1
3,290,125	-		GFF3235	0.62	+1.2
3,290,125	-		GFF3235	0.62	-1.1
3,290,125	-		GFF3235	0.62	-1.6
3,290,127	+		GFF3235	0.62	-0.3
3,290,135	+		GFF3235	0.62	+0.8
3,290,135	-		GFF3235	0.62	+0.9
3,290,171	-		GFF3235	0.64	-0.1
3,290,172	-		GFF3235	0.64	-0.2
3,290,183	+		GFF3235	0.64	+0.7
3,290,197	+		GFF3235	0.65	-1.1
3,290,205	-		GFF3235	0.65	+0.0
3,290,205	-		GFF3235	0.65	-0.4
3,290,223	+		GFF3235	0.66	-1.4
3,290,223	+		GFF3235	0.66	-0.5
3,290,223	+		GFF3235	0.66	-2.1
3,290,231	-		GFF3235	0.67	-0.3
3,290,231	-		GFF3235	0.67	+0.9
3,290,231	-		GFF3235	0.67	+1.1
3,290,231	-		GFF3235	0.67	-0.3
3,290,248	+		GFF3235	0.68	-0.0
3,290,250	+		GFF3235	0.68	+0.3
3,290,256	-		GFF3235	0.68	+0.9
3,290,258	+		GFF3235	0.68	+0.2
3,290,258	+		GFF3235	0.68	+0.3
3,290,263	+		GFF3235	0.68	+1.3
3,290,263	+		GFF3235	0.68	-1.7
3,290,263	+		GFF3235	0.68	-0.6
3,290,266	-		GFF3235	0.68	+0.4
3,290,266	-		GFF3235	0.68	+0.8
3,290,271	-		GFF3235	0.69	-0.6
3,290,271	-		GFF3235	0.69	-1.1
3,290,271	-		GFF3235	0.69	-1.0
3,290,271	-		GFF3235	0.69	-1.3
3,290,307	+		GFF3235	0.70	-2.4
3,290,318	+		GFF3235	0.71	-1.5
3,290,326	+		GFF3235	0.71	+0.1
3,290,329	+		GFF3235	0.71	-1.4
3,290,343	+		GFF3235	0.72	-0.2
3,290,343	+		GFF3235	0.72	+1.5
3,290,351	-		GFF3235	0.72	-0.5
3,290,363	-		GFF3235	0.73	+0.2
3,290,369	-		GFF3235	0.73	-1.6
3,290,374	-		GFF3235	0.73	-1.6
3,290,376	+		GFF3235	0.74	+0.1
3,290,403	+		GFF3235	0.75	-0.1
3,290,403	+		GFF3235	0.75	-1.3
3,290,403	+		GFF3235	0.75	+0.1
3,290,403	+		GFF3235	0.75	+1.0
3,290,403	+		GFF3235	0.75	+0.2
3,290,403	+		GFF3235	0.75	+1.1
3,290,403	+		GFF3235	0.75	+0.8
3,290,403	+		GFF3235	0.75	-1.3
3,290,403	+		GFF3235	0.75	+1.3
3,290,403	+		GFF3235	0.75	-0.1
3,290,403	+		GFF3235	0.75	+0.2
3,290,403	+		GFF3235	0.75	-0.4
3,290,403	+		GFF3235	0.75	-0.3
3,290,405	+		GFF3235	0.75	-1.2
3,290,405	+		GFF3235	0.75	-0.1
3,290,405	+		GFF3235	0.75	+0.2
3,290,405	+		GFF3235	0.75	-0.2
3,290,405	+		GFF3235	0.75	+0.2
3,290,405	+		GFF3235	0.75	-2.4
3,290,405	+		GFF3235	0.75	+1.0
3,290,405	+		GFF3235	0.75	+0.2
3,290,405	+		GFF3235	0.75	+0.8
3,290,411	-		GFF3235	0.75	-1.4
3,290,411	-		GFF3235	0.75	-0.1
3,290,411	-		GFF3235	0.75	+0.1
3,290,411	-		GFF3235	0.75	+0.4
3,290,411	-		GFF3235	0.75	-1.9
3,290,413	-		GFF3235	0.75	+0.2
3,290,413	-		GFF3235	0.75	+0.9
3,290,428	+		GFF3235	0.76	+0.4
3,290,431	-		GFF3235	0.76	+1.0
3,290,433	+		GFF3235	0.76	+0.4
3,290,433	+		GFF3235	0.76	+0.0
3,290,433	+		GFF3235	0.76	-0.1
3,290,438	+		GFF3235	0.77	-0.1
3,290,441	-		GFF3235	0.77	-0.7
3,290,446	-		GFF3235	0.77	-2.0
3,290,461	+		GFF3235	0.78	-0.4
3,290,462	+		GFF3235	0.78	+0.6
3,290,462	+		GFF3235	0.78	-1.6
3,290,462	-		GFF3235	0.78	-1.9
3,290,469	-		GFF3235	0.78	-1.6
3,290,469	-		GFF3235	0.78	-0.4
3,290,470	-		GFF3235	0.78	+0.7
3,290,470	-		GFF3235	0.78	-1.1
3,290,472	+		GFF3235	0.78	+0.4
3,290,472	+		GFF3235	0.78	-1.6
3,290,483	+		GFF3235	0.79	+0.4
3,290,540	+		GFF3235	0.81	+1.0
3,290,546	-		GFF3235	0.82	-0.6
3,290,575	-		GFF3235	0.83	-0.7
3,290,613	-		GFF3235	0.85	-0.1
3,290,629	+		GFF3235	0.86	+0.9
3,290,629	+		GFF3235	0.86	-0.3
3,290,649	+		GFF3235	0.86	+0.4
3,290,655	-		GFF3235	0.87	-0.2
3,290,660	+		GFF3235	0.87	-0.1
3,290,679	+		GFF3235	0.88	+1.0
3,290,683	-		GFF3235	0.88	-1.8
3,290,686	+		GFF3235	0.88	-1.3
3,290,698	+		GFF3235	0.89	-2.8
3,290,714	+		GFF3235	0.90	+1.2
3,290,714	+		GFF3235	0.90	+1.2
3,290,714	+		GFF3235	0.90	+0.2
3,290,723	+				-2.1
3,290,733	+				-0.0
3,290,757	-				-0.1
3,290,757	-				-2.0
3,290,762	+				+0.2
3,290,762	+				-0.8
3,290,770	-				+0.1
3,290,783	+				+0.5
3,290,783	+				+0.7
3,290,789	+				-0.1
3,290,791	-				-0.3
3,290,793	+				-0.7
3,290,802	-				-2.4
3,290,841	-				-1.0
3,290,844	+				-0.8
3,290,854	-				-0.3
3,290,869	-				+1.0
3,290,869	-				+0.9
3,290,882	+				-1.3
3,290,960	+				-0.6
3,290,969	-				-0.1
3,290,969	-				-0.6
3,290,969	-				-0.5
3,290,969	-				-1.7
3,290,969	-				-0.4
3,290,971	-				-0.2
3,290,971	-				-0.1
3,290,981	+				-0.8
3,290,981	+				-1.7
3,291,010	+				-0.4
3,291,059	+				-0.5
3,291,079	-				-0.0
3,291,079	-				+0.4
3,291,116	+				-0.2
3,291,124	-				+0.2
3,291,129	-				-0.0
3,291,130	+				+1.9
3,291,138	-				+0.7
3,291,186	+		GFF3236	0.12	-0.5
3,291,194	-		GFF3236	0.12	+0.0
3,291,229	+		GFF3236	0.14	-1.7
3,291,237	-		GFF3236	0.14	-0.9
3,291,237	-		GFF3236	0.14	+1.2
3,291,271	+		GFF3236	0.16	+0.4
3,291,279	-		GFF3236	0.16	+1.4
3,291,290	+		GFF3236	0.17	+0.2
3,291,295	+		GFF3236	0.17	+0.3
3,291,312	-		GFF3236	0.18	-1.9
3,291,312	-		GFF3236	0.18	-1.5
3,291,312	-		GFF3236	0.18	+0.4
3,291,317	-		GFF3236	0.18	+0.4
3,291,317	-		GFF3236	0.18	+0.2
3,291,324	-		GFF3236	0.19	+1.4
3,291,352	-		GFF3236	0.20	-0.3
3,291,352	-		GFF3236	0.20	-1.9
3,291,352	-		GFF3236	0.20	-2.4
3,291,352	-		GFF3236	0.20	-2.1
3,291,361	+		GFF3236	0.20	-0.1
3,291,367	-		GFF3236	0.21	-0.0
3,291,367	-		GFF3236	0.21	-1.9
3,291,375	+		GFF3236	0.21	-0.6
3,291,375	+		GFF3236	0.21	-0.1
3,291,383	-		GFF3236	0.22	-0.6
3,291,393	+		GFF3236	0.22	+0.7
3,291,393	+		GFF3236	0.22	-1.6
3,291,398	+		GFF3236	0.22	-1.9
3,291,401	-		GFF3236	0.22	+0.1
3,291,401	-		GFF3236	0.22	+0.8
3,291,406	-		GFF3236	0.23	+1.2
3,291,422	-		GFF3236	0.23	+1.1
3,291,427	+		GFF3236	0.24	-3.2
3,291,427	-		GFF3236	0.24	-0.1
3,291,432	+		GFF3236	0.24	+0.3
3,291,454	+		GFF3236	0.25	-2.0
3,291,455	-		GFF3236	0.25	+0.1
3,291,463	+		GFF3236	0.26	-1.7
3,291,471	+		GFF3236	0.26	-2.4
3,291,471	-		GFF3236	0.26	-1.9
3,291,471	-		GFF3236	0.26	-1.1
3,291,476	+		GFF3236	0.26	+1.9
3,291,485	-		GFF3236	0.27	-0.6
3,291,485	-		GFF3236	0.27	-0.3
3,291,485	-		GFF3236	0.27	+1.1
3,291,490	-		GFF3236	0.27	-0.6
3,291,491	-		GFF3236	0.27	-0.2
3,291,491	-		GFF3236	0.27	+0.2
3,291,507	+		GFF3236	0.28	-1.9
3,291,509	+		GFF3236	0.28	-0.3
3,291,514	+		GFF3236	0.28	+1.2
3,291,532	+		GFF3236	0.29	-0.3
3,291,545	-		GFF3236	0.30	-0.7
3,291,555	-		GFF3236	0.30	-0.3
3,291,564	+		GFF3236	0.31	+0.6
3,291,564	+		GFF3236	0.31	-0.2
3,291,569	+		GFF3236	0.31	-0.0
3,291,569	+		GFF3236	0.31	-0.3
3,291,577	-		GFF3236	0.31	+0.9
3,291,577	-		GFF3236	0.31	+0.7
3,291,582	-		GFF3236	0.32	-0.6
3,291,585	+		GFF3236	0.32	-0.8
3,291,587	-		GFF3236	0.32	-1.3
3,291,591	-		GFF3236	0.32	-0.6
3,291,593	-		GFF3236	0.32	+0.4
3,291,598	-		GFF3236	0.32	+0.3
3,291,613	-		GFF3236	0.33	-1.7
3,291,636	+		GFF3236	0.34	-0.1
3,291,660	+		GFF3236	0.35	+0.6
3,291,666	+		GFF3236	0.36	-0.3
3,291,668	-		GFF3236	0.36	-0.3
3,291,668	-		GFF3236	0.36	-0.4
3,291,670	+		GFF3236	0.36	+1.4
3,291,671	+		GFF3236	0.36	-0.3
3,291,674	-		GFF3236	0.36	-1.5
3,291,674	-		GFF3236	0.36	+0.5
3,291,679	-		GFF3236	0.36	+0.2
3,291,679	-		GFF3236	0.36	+0.5
3,291,689	+		GFF3236	0.37	+0.6
3,291,689	+		GFF3236	0.37	-0.5
3,291,697	-		GFF3236	0.37	-1.5
3,291,697	-		GFF3236	0.37	+2.3
3,291,697	-		GFF3236	0.37	-0.1
3,291,706	+		GFF3236	0.38	-1.4
3,291,706	+		GFF3236	0.38	+1.0
3,291,708	+		GFF3236	0.38	-0.0
3,291,720	+		GFF3236	0.38	-0.9
3,291,724	+		GFF3236	0.39	-0.1
3,291,724	+		GFF3236	0.39	-1.8
3,291,728	-		GFF3236	0.39	+0.2
3,291,728	-		GFF3236	0.39	-0.5
3,291,734	+		GFF3236	0.39	+0.4
3,291,748	+		GFF3236	0.40	+0.5
3,291,748	+		GFF3236	0.40	+0.1
3,291,839	+		GFF3236	0.44	-0.3
3,291,880	-		GFF3236	0.46	+0.8
3,291,929	-		GFF3236	0.49	+0.5
3,291,938	+		GFF3236	0.49	-1.1
3,291,943	+		GFF3236	0.50	-2.7
3,291,943	+		GFF3236	0.50	-0.9
3,291,943	+		GFF3236	0.50	+1.6
3,291,943	+		GFF3236	0.50	-0.1
3,291,946	-		GFF3236	0.50	-0.0
3,291,951	-		GFF3236	0.50	-1.4
3,291,951	-		GFF3236	0.50	-1.3
3,291,951	-		GFF3236	0.50	+0.2
3,291,953	+		GFF3236	0.50	-1.1
3,291,953	+		GFF3236	0.50	-0.7
3,291,953	+		GFF3236	0.50	+1.4
3,291,953	+		GFF3236	0.50	-1.1
3,291,953	+		GFF3236	0.50	+0.1
3,291,956	-		GFF3236	0.50	-0.1
3,291,961	-		GFF3236	0.51	+0.5
3,291,961	-		GFF3236	0.51	+0.5
3,291,961	-		GFF3236	0.51	-0.2
3,291,961	-		GFF3236	0.51	-2.0
3,291,961	-		GFF3236	0.51	+0.1
3,291,975	+		GFF3236	0.51	-0.1
3,291,975	+		GFF3236	0.51	-0.7
3,291,975	+		GFF3236	0.51	-0.2
3,291,985	+		GFF3236	0.52	-0.3
3,292,030	+		GFF3236	0.54	-1.7
3,292,030	+		GFF3236	0.54	+1.1
3,292,038	-		GFF3236	0.54	+0.4
3,292,055	-		GFF3236	0.55	+0.9
3,292,055	-		GFF3236	0.55	+1.3
3,292,055	-		GFF3236	0.55	-0.4
3,292,063	-		GFF3236	0.56	+0.3
3,292,066	+		GFF3236	0.56	+0.2
3,292,066	+		GFF3236	0.56	+0.7
3,292,066	+		GFF3236	0.56	-0.6
3,292,066	+		GFF3236	0.56	-1.1
3,292,074	+		GFF3236	0.56	-0.0
3,292,074	-		GFF3236	0.56	-1.6
3,292,074	-		GFF3236	0.56	-1.9
3,292,074	-		GFF3236	0.56	-0.7
3,292,074	-		GFF3236	0.56	+1.4
3,292,074	-		GFF3236	0.56	+1.2
3,292,074	-		GFF3236	0.56	-0.6
3,292,074	-		GFF3236	0.56	-0.7
3,292,074	-		GFF3236	0.56	-1.1
3,292,074	-		GFF3236	0.56	-0.5
3,292,074	-		GFF3236	0.56	-2.2
3,292,074	-		GFF3236	0.56	+0.5
3,292,081	+		GFF3236	0.57	+1.1
3,292,112	-		GFF3236	0.58	-0.6
3,292,125	-		GFF3236	0.59	-0.6
3,292,141	+		GFF3236	0.60	-0.7
3,292,146	+		GFF3236	0.60	-0.5
3,292,146	+		GFF3236	0.60	-1.6
3,292,146	+		GFF3236	0.60	-1.5
3,292,146	+		GFF3236	0.60	-0.5
3,292,146	+		GFF3236	0.60	+0.9
3,292,146	+		GFF3236	0.60	-1.1
3,292,146	+		GFF3236	0.60	-0.1
3,292,154	-		GFF3236	0.60	+0.6
3,292,154	-		GFF3236	0.60	-0.8
3,292,154	-		GFF3236	0.60	+0.0
3,292,154	-		GFF3236	0.60	+1.4
3,292,154	-		GFF3236	0.60	-2.4
3,292,154	-		GFF3236	0.60	+0.5
3,292,154	-		GFF3236	0.60	-0.1
3,292,156	+		GFF3236	0.60	-1.1
3,292,164	-		GFF3236	0.61	+0.5
3,292,194	+		GFF3236	0.62	+1.1
3,292,194	+		GFF3236	0.62	+0.1
3,292,197	-		GFF3236	0.62	-1.1
3,292,238	-		GFF3236	0.64	+0.4
3,292,264	+		GFF3236	0.66	-0.1
3,292,272	-		GFF3236	0.66	+0.5
3,292,276	+		GFF3236	0.66	-1.9
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