Strain Fitness in Sphingobium sp. HT1-2 around GFF3213

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,269,557	+		GFF3212	0.45	-0.1
3,269,567	+		GFF3212	0.46	-0.4
3,269,585	-		GFF3212	0.47	+0.6
3,269,585	-		GFF3212	0.47	+0.4
3,269,586	+		GFF3212	0.47	+1.3
3,269,594	-		GFF3212	0.47	-0.6
3,269,603	+		GFF3212	0.48	-0.9
3,269,603	+		GFF3212	0.48	+0.5
3,269,603	+		GFF3212	0.48	+0.5
3,269,611	+		GFF3212	0.48	+0.6
3,269,611	+		GFF3212	0.48	+0.7
3,269,611	-		GFF3212	0.48	-0.0
3,269,611	-		GFF3212	0.48	-1.1
3,269,611	-		GFF3212	0.48	-1.0
3,269,611	-		GFF3212	0.48	+0.4
3,269,611	-		GFF3212	0.48	-0.5
3,269,611	-		GFF3212	0.48	+0.2
3,269,611	-		GFF3212	0.48	-0.9
3,269,611	-		GFF3212	0.48	+0.1
3,269,611	-		GFF3212	0.48	+1.3
3,269,611	-		GFF3212	0.48	-0.5
3,269,611	-		GFF3212	0.48	+1.2
3,269,611	-		GFF3212	0.48	+1.2
3,269,619	-		GFF3212	0.49	-0.4
3,269,629	-		GFF3212	0.49	-2.3
3,269,659	-		GFF3212	0.51	-0.4
3,269,666	-		GFF3212	0.51	+1.2
3,269,683	+		GFF3212	0.52	+0.6
3,269,683	+		GFF3212	0.52	-1.6
3,269,683	+		GFF3212	0.52	-1.6
3,269,683	+		GFF3212	0.52	-0.3
3,269,688	+		GFF3212	0.52	+0.6
3,269,688	+		GFF3212	0.52	+0.9
3,269,688	+		GFF3212	0.52	-0.8
3,269,688	+		GFF3212	0.52	-0.0
3,269,688	+		GFF3212	0.52	-0.4
3,269,691	-		GFF3212	0.53	+1.9
3,269,691	-		GFF3212	0.53	+0.7
3,269,691	-		GFF3212	0.53	+1.5
3,269,691	-		GFF3212	0.53	+1.5
3,269,696	-		GFF3212	0.53	+0.0
3,269,699	+		GFF3212	0.53	+0.2
3,269,701	-		GFF3212	0.53	+0.2
3,269,712	+		GFF3212	0.54	+0.8
3,269,720	-		GFF3212	0.54	-0.9
3,269,728	+		GFF3212	0.55	+0.4
3,269,749	-		GFF3212	0.56	+0.2
3,269,756	+		GFF3212	0.56	-1.2
3,269,764	-		GFF3212	0.57	-0.2
3,269,768	-		GFF3212	0.57	+1.2
3,269,803	+		GFF3212	0.59	-0.5
3,269,836	+		GFF3212	0.61	+0.7
3,269,836	+		GFF3212	0.61	-0.3
3,269,836	+		GFF3212	0.61	-0.2
3,269,836	+		GFF3212	0.61	-1.4
3,269,844	-		GFF3212	0.61	+1.7
3,269,844	-		GFF3212	0.61	-0.3
3,269,844	-		GFF3212	0.61	-0.3
3,269,844	-		GFF3212	0.61	-0.8
3,269,844	-		GFF3212	0.61	+0.5
3,269,844	-		GFF3212	0.61	-0.9
3,269,844	-		GFF3212	0.61	-0.2
3,269,844	-		GFF3212	0.61	-1.5
3,269,856	+		GFF3212	0.62	-0.1
3,269,857	+		GFF3212	0.62	-0.7
3,269,861	+		GFF3212	0.62	+1.2
3,269,865	-		GFF3212	0.62	+0.3
3,269,866	+		GFF3212	0.62	-0.8
3,269,871	+		GFF3212	0.62	+0.6
3,269,874	-		GFF3212	0.63	-0.1
3,269,907	+		GFF3212	0.64	-0.8
3,269,907	+		GFF3212	0.64	-1.3
3,269,907	+		GFF3212	0.64	-0.4
3,269,915	-		GFF3212	0.65	-0.5
3,269,915	-		GFF3212	0.65	+0.2
3,269,928	+		GFF3212	0.66	-0.5
3,269,928	+		GFF3212	0.66	+1.3
3,269,928	+		GFF3212	0.66	-0.7
3,269,928	+		GFF3212	0.66	-0.1
3,269,928	+		GFF3212	0.66	+0.5
3,269,928	+		GFF3212	0.66	-0.6
3,269,928	+		GFF3212	0.66	+0.1
3,269,928	+		GFF3212	0.66	-1.1
3,269,928	+		GFF3212	0.66	-0.1
3,269,928	+		GFF3212	0.66	+0.0
3,269,928	+		GFF3212	0.66	+0.7
3,269,928	+		GFF3212	0.66	+0.3
3,269,928	+		GFF3212	0.66	-1.8
3,269,928	+		GFF3212	0.66	+0.4
3,269,928	+		GFF3212	0.66	+0.4
3,269,928	+		GFF3212	0.66	+0.4
3,269,928	+		GFF3212	0.66	+0.7
3,269,931	-		GFF3212	0.66	+0.4
3,269,936	-		GFF3212	0.66	-1.4
3,269,936	-		GFF3212	0.66	-0.3
3,269,936	-		GFF3212	0.66	+0.6
3,269,936	-		GFF3212	0.66	+0.4
3,269,936	-		GFF3212	0.66	-0.1
3,269,936	-		GFF3212	0.66	+0.4
3,269,936	-		GFF3212	0.66	-1.5
3,269,936	-		GFF3212	0.66	+1.5
3,269,936	-		GFF3212	0.66	-0.9
3,269,936	-		GFF3212	0.66	-1.2
3,269,936	-		GFF3212	0.66	+0.1
3,269,936	-		GFF3212	0.66	-0.3
3,269,936	-		GFF3212	0.66	+0.2
3,269,936	-		GFF3212	0.66	-0.3
3,269,951	+		GFF3212	0.67	-0.4
3,269,951	+		GFF3212	0.67	+0.7
3,269,951	+		GFF3212	0.67	-1.4
3,269,954	-		GFF3212	0.67	-1.0
3,269,954	-		GFF3212	0.67	+0.5
3,269,956	+		GFF3212	0.67	+1.1
3,269,960	+		GFF3212	0.67	+0.5
3,269,966	+		GFF3212	0.68	+0.1
3,269,967	-		GFF3212	0.68	+0.5
3,269,967	-		GFF3212	0.68	-0.8
3,269,972	+		GFF3212	0.68	-1.6
3,269,974	-		GFF3212	0.68	+0.7
3,269,978	-		GFF3212	0.68	+0.4
3,269,980	+		GFF3212	0.68	+0.5
3,269,993	+		GFF3212	0.69	+0.3
3,269,993	+		GFF3212	0.69	+0.7
3,269,993	+		GFF3212	0.69	+1.0
3,270,001	-		GFF3212	0.70	-1.5
3,270,001	-		GFF3212	0.70	+0.4
3,270,001	-		GFF3212	0.70	-1.4
3,270,027	-		GFF3212	0.71	-0.8
3,270,052	-		GFF3212	0.72	-0.6
3,270,071	+		GFF3212	0.73	-0.6
3,270,071	+		GFF3212	0.73	+0.0
3,270,111	+		GFF3212	0.76	-0.7
3,270,112	+		GFF3212	0.76	+1.2
3,270,115	-		GFF3212	0.76	+1.5
3,270,164	-		GFF3212	0.78	+0.8
3,270,165	-		GFF3212	0.79	-1.3
3,270,179	-		GFF3212	0.79	-0.5
3,270,220	-		GFF3212	0.82	+0.8
3,270,238	+		GFF3212	0.82	+0.2
3,270,239	+		GFF3212	0.83	+1.1
3,270,239	+		GFF3212	0.83	+1.0
3,270,239	+		GFF3212	0.83	+0.5
3,270,239	+		GFF3212	0.83	+0.5
3,270,247	-		GFF3212	0.83	-0.6
3,270,275	+		GFF3212	0.85	+0.5
3,270,285	+		GFF3212	0.85	-0.5
3,270,285	+		GFF3212	0.85	-0.8
3,270,298	-		GFF3212	0.86	-2.2
3,270,298	-		GFF3212	0.86	-0.4
3,270,298	-		GFF3212	0.86	-1.8
3,270,336	-		GFF3212	0.88	-0.6
3,270,341	-		GFF3212	0.88	+0.0
3,270,342	-		GFF3212	0.88	-1.8
3,270,360	-		GFF3212	0.89	-1.6
3,270,384	+				-1.1
3,270,384	+				-1.0
3,270,384	+				+0.7
3,270,392	-				+0.2
3,270,392	-				-0.1
3,270,392	-				-0.4
3,270,392	-				+0.8
3,270,410	-				-0.6
3,270,421	+				-1.3
3,270,452	+				-0.8
3,270,460	-				+0.5
3,270,465	-				-0.5
3,270,466	-				+0.5
3,270,491	+				+0.9
3,270,491	+				-2.1
3,270,491	+				+0.9
3,270,496	+				-1.4
3,270,496	+				+1.1
3,270,496	+				-0.3
3,270,496	+				+0.3
3,270,499	-				+0.1
3,270,499	-				-0.8
3,270,500	+				+0.2
3,270,501	+				-1.1
3,270,501	+				-0.3
3,270,504	-				+0.2
3,270,504	-				-0.3
3,270,504	-				-0.3
3,270,504	-				-1.6
3,270,504	-				+0.5
3,270,504	-				+0.1
3,270,506	-				-0.3
3,270,509	-				-0.4
3,270,526	-				+0.2
3,270,544	+				-0.4
3,270,712	+		GFF3213	0.26	-0.5
3,270,735	-		GFF3213	0.29	-1.1
3,270,745	-		GFF3213	0.31	-2.4
3,270,763	+		GFF3213	0.34	-0.8
3,270,769	+		GFF3213	0.35	+0.3
3,270,786	-		GFF3213	0.38	-0.3
3,270,794	+		GFF3213	0.39	+0.8
3,270,798	-		GFF3213	0.40	-1.3
3,270,827	+		GFF3213	0.44	-0.8
3,270,827	+		GFF3213	0.44	+0.7
3,270,827	+		GFF3213	0.44	-1.6
3,270,827	+		GFF3213	0.44	+0.2
3,270,835	-		GFF3213	0.46	-0.3
3,270,850	-		GFF3213	0.48	-0.2
3,270,890	+		GFF3213	0.54	-0.1
3,270,898	-		GFF3213	0.56	+0.4
3,270,898	-		GFF3213	0.56	-1.8
3,270,898	-		GFF3213	0.56	-1.2
3,270,905	+		GFF3213	0.57	+1.6
3,270,923	+		GFF3213	0.60	+0.7
3,270,934	+		GFF3213	0.62	-1.9
3,270,939	+		GFF3213	0.62	-0.4
3,270,947	-		GFF3213	0.64	-0.1
3,270,947	-		GFF3213	0.64	-0.9
3,270,951	-		GFF3213	0.64	-0.1
3,270,982	-		GFF3213	0.69	+0.6
3,271,006	-		GFF3213	0.73	-3.3
3,271,014	+		GFF3213	0.75	+0.1
3,271,048	+		GFF3213	0.80	-1.6
3,271,056	-		GFF3213	0.81	+0.5
3,271,058	-		GFF3213	0.82	-2.1
3,271,095	+		GFF3213	0.88	-0.4
3,271,097	+		GFF3213	0.88	-0.1
3,271,097	+		GFF3213	0.88	+0.7
3,271,105	-		GFF3213	0.89	+0.3
3,271,105	-		GFF3213	0.89	-0.1
3,271,105	-		GFF3213	0.89	-0.3
3,271,130	+				+0.3
3,271,130	+				+0.0
3,271,138	-				-1.3
3,271,138	-				-0.4
3,271,138	-				-1.8
3,271,157	+				+0.5
3,271,162	+				-0.5
3,271,163	+				-0.9
3,271,163	+				-1.8
3,271,163	+				-0.7
3,271,163	+				+0.1
3,271,165	-				-1.3
3,271,165	-				+1.6
3,271,169	+				-2.6
3,271,171	-				-0.5
3,271,171	-				+0.3
3,271,171	-				+0.5
3,271,194	-				-0.0
3,271,199	+				+1.5
3,271,204	+				+0.2
3,271,206	+				+0.8
3,271,207	-				-0.8
3,271,209	+				+1.0
3,271,212	-				-0.7
3,271,214	+				-0.2
3,271,214	+				+0.9
3,271,214	-				+0.7
3,271,222	+				+1.2
3,271,222	-				-2.4
3,271,222	-				-2.1
3,271,222	-				-1.1
3,271,222	-				-1.7
3,271,224	+				+1.0
3,271,224	+				-0.3
3,271,224	+				+0.4
3,271,224	+				+0.1
3,271,230	-				-0.8
3,271,230	-				-0.2
3,271,232	-				-0.3
3,271,232	-				+0.7
3,271,232	-				+1.2
3,271,232	-				-0.1
3,271,232	-				-1.2
3,271,232	-				-0.6
3,271,239	+				-2.1
3,271,239	+				+0.1
3,271,239	+				-0.2
3,271,239	+				+1.2
3,271,239	+				-0.5
3,271,239	+				+0.9
3,271,239	+				-2.4
3,271,247	-				+0.4
3,271,247	-				+1.1
3,271,247	-				+0.0
3,271,247	-				-1.2
3,271,247	-				+1.6
3,271,247	-				+0.9
3,271,262	-				-1.1
3,271,263	-				-0.2
3,271,268	-				+0.6
3,271,276	+				+0.2
3,271,284	+				+0.7
3,271,284	-				-0.6
3,271,292	-				-1.1
3,271,292	-				+0.0
3,271,296	-				-1.5
3,271,337	+		GFF3214	0.10	-0.1
3,271,337	+		GFF3214	0.10	+0.3
3,271,337	-		GFF3214	0.10	+0.7
3,271,340	-		GFF3214	0.11	+0.7
3,271,344	+		GFF3214	0.11	-0.0
3,271,352	-		GFF3214	0.12	+0.7
3,271,356	-		GFF3214	0.12	-2.1
3,271,397	-		GFF3214	0.15	-0.5
3,271,398	+		GFF3214	0.15	-0.4
3,271,406	+		GFF3214	0.16	+0.8
3,271,411	+		GFF3214	0.16	-0.6
3,271,428	+		GFF3214	0.18	-2.6
3,271,429	+		GFF3214	0.18	+0.5
3,271,429	-		GFF3214	0.18	+0.1
3,271,429	-		GFF3214	0.18	-0.6
3,271,429	-		GFF3214	0.18	+0.4
3,271,436	-		GFF3214	0.18	-0.3
3,271,467	+		GFF3214	0.21	-0.6
3,271,475	-		GFF3214	0.21	-0.2
3,271,496	+		GFF3214	0.23	+0.5
3,271,504	-		GFF3214	0.23	-0.4
3,271,504	-		GFF3214	0.23	-0.1
3,271,504	-		GFF3214	0.23	-0.6
3,271,527	+		GFF3214	0.25	+0.9
3,271,544	-		GFF3214	0.27	-0.3
3,271,562	-		GFF3214	0.28	-1.6
3,271,562	-		GFF3214	0.28	-0.8
3,271,573	+		GFF3214	0.29	+0.3
3,271,593	+		GFF3214	0.30	-1.4
3,271,593	+		GFF3214	0.30	-1.8
3,271,593	+		GFF3214	0.30	+2.2
3,271,593	+		GFF3214	0.30	-0.3
3,271,601	-		GFF3214	0.31	+0.6
3,271,611	+		GFF3214	0.32	+0.2
3,271,611	+		GFF3214	0.32	-2.6
3,271,611	+		GFF3214	0.32	+0.5
3,271,611	+		GFF3214	0.32	+0.4
3,271,611	+		GFF3214	0.32	-0.4
3,271,619	-		GFF3214	0.32	+0.3
3,271,629	+		GFF3214	0.33	-0.8
3,271,664	-		GFF3214	0.36	-1.7
3,271,682	+		GFF3214	0.37	+0.5
3,271,683	-		GFF3214	0.37	+1.5
3,271,684	+		GFF3214	0.37	-0.8
3,271,684	+		GFF3214	0.37	+0.7
3,271,684	+		GFF3214	0.37	-0.4
3,271,684	+		GFF3214	0.37	-0.3
3,271,684	+		GFF3214	0.37	-2.0
3,271,692	-		GFF3214	0.38	-1.6
3,271,692	-		GFF3214	0.38	+0.3
3,271,692	-		GFF3214	0.38	+0.2
3,271,692	-		GFF3214	0.38	+0.3
3,271,692	-		GFF3214	0.38	-0.8
3,271,692	-		GFF3214	0.38	-0.1
3,271,692	-		GFF3214	0.38	+0.6
3,271,703	+		GFF3214	0.39	-0.7
3,271,703	+		GFF3214	0.39	-1.6
3,271,703	+		GFF3214	0.39	+0.3
3,271,711	-		GFF3214	0.39	-0.5
3,271,711	-		GFF3214	0.39	-1.5
3,271,711	-		GFF3214	0.39	+0.1
3,271,714	-		GFF3214	0.40	+0.4
3,271,722	+		GFF3214	0.40	-0.7
3,271,722	+		GFF3214	0.40	-1.8
3,271,725	+		GFF3214	0.41	-0.3
3,271,726	+		GFF3214	0.41	-0.3
3,271,754	+		GFF3214	0.43	-0.5
3,271,817	-		GFF3214	0.48	+0.1
3,271,841	+		GFF3214	0.50	-0.3
3,271,849	-		GFF3214	0.50	-0.7
3,271,865	-		GFF3214	0.51	+0.3
3,271,877	+		GFF3214	0.52	+0.1
3,271,877	+		GFF3214	0.52	+0.0
3,271,885	-		GFF3214	0.53	-0.4
3,271,896	+		GFF3214	0.54	+0.7
3,271,901	+		GFF3214	0.54	+0.7
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