Strain Fitness in Sphingobium sp. HT1-2 around GFF3123

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,194,362	-		GFF3122	0.31	-0.3
3,194,362	-		GFF3122	0.31	-2.0
3,194,362	-		GFF3122	0.31	+0.5
3,194,362	-		GFF3122	0.31	-1.1
3,194,362	-		GFF3122	0.31	+0.1
3,194,362	-		GFF3122	0.31	+0.5
3,194,371	-		GFF3122	0.32	-0.7
3,194,396	-		GFF3122	0.34	-1.0
3,194,409	+		GFF3122	0.35	+0.7
3,194,410	+		GFF3122	0.35	-1.0
3,194,412	-		GFF3122	0.35	-0.5
3,194,449	-		GFF3122	0.38	-2.0
3,194,456	+		GFF3122	0.38	+0.1
3,194,460	-		GFF3122	0.38	-0.5
3,194,466	+		GFF3122	0.39	+0.3
3,194,496	+		GFF3122	0.41	-0.9
3,194,496	+		GFF3122	0.41	+1.4
3,194,496	+		GFF3122	0.41	-0.2
3,194,496	+		GFF3122	0.41	-0.8
3,194,504	-		GFF3122	0.42	-1.0
3,194,504	-		GFF3122	0.42	-1.3
3,194,504	-		GFF3122	0.42	+0.6
3,194,504	-		GFF3122	0.42	-0.4
3,194,504	-		GFF3122	0.42	-1.0
3,194,504	-		GFF3122	0.42	-0.9
3,194,504	-		GFF3122	0.42	+0.0
3,194,504	-		GFF3122	0.42	-1.3
3,194,504	-		GFF3122	0.42	+0.2
3,194,504	-		GFF3122	0.42	-0.4
3,194,521	-		GFF3122	0.43	+0.4
3,194,565	+		GFF3122	0.46	+0.8
3,194,565	+		GFF3122	0.46	-1.3
3,194,565	+		GFF3122	0.46	-0.1
3,194,569	+		GFF3122	0.47	+0.3
3,194,573	-		GFF3122	0.47	-0.5
3,194,573	-		GFF3122	0.47	-0.5
3,194,573	-		GFF3122	0.47	+0.1
3,194,573	-		GFF3122	0.47	-1.7
3,194,573	-		GFF3122	0.47	+0.9
3,194,574	+		GFF3122	0.47	-0.6
3,194,580	+		GFF3122	0.47	+0.4
3,194,584	+		GFF3122	0.48	-1.6
3,194,584	+		GFF3122	0.48	-1.7
3,194,587	-		GFF3122	0.48	+0.4
3,194,592	-		GFF3122	0.48	-0.7
3,194,592	-		GFF3122	0.48	-0.0
3,194,617	-		GFF3122	0.50	-0.6
3,194,635	-		GFF3122	0.52	+0.2
3,194,729	-		GFF3122	0.59	-0.6
3,194,729	-		GFF3122	0.59	-0.1
3,194,764	+		GFF3122	0.61	+1.2
3,194,802	+		GFF3122	0.64	-0.7
3,194,802	+		GFF3122	0.64	-0.3
3,194,802	+		GFF3122	0.64	-1.2
3,194,802	+		GFF3122	0.64	-2.2
3,194,807	+		GFF3122	0.65	+1.2
3,194,810	-		GFF3122	0.65	-1.0
3,194,880	+		GFF3122	0.70	+0.0
3,194,880	+		GFF3122	0.70	+1.3
3,194,881	-		GFF3122	0.70	-2.6
3,194,897	+		GFF3122	0.71	+0.4
3,194,905	-		GFF3122	0.72	+0.8
3,194,905	-		GFF3122	0.72	+1.1
3,194,905	-		GFF3122	0.72	-1.1
3,194,905	-		GFF3122	0.72	-0.1
3,194,918	+		GFF3122	0.73	-1.2
3,194,918	+		GFF3122	0.73	+1.4
3,194,918	+		GFF3122	0.73	-1.7
3,194,921	-		GFF3122	0.73	-1.6
3,194,926	-		GFF3122	0.74	-0.3
3,194,926	-		GFF3122	0.74	-0.8
3,194,926	-		GFF3122	0.74	-0.6
3,194,926	-		GFF3122	0.74	-0.7
3,194,926	-		GFF3122	0.74	+0.4
3,194,926	-		GFF3122	0.74	+0.8
3,194,926	-		GFF3122	0.74	+0.1
3,194,963	+		GFF3122	0.76	+0.0
3,194,963	+		GFF3122	0.76	+0.2
3,194,965	+		GFF3122	0.76	-1.2
3,194,971	+		GFF3122	0.77	-0.4
3,194,971	-		GFF3122	0.77	-0.4
3,194,981	+		GFF3122	0.78	-0.8
3,194,989	-		GFF3122	0.78	-0.2
3,194,991	+		GFF3122	0.78	+0.6
3,194,999	-		GFF3122	0.79	-0.7
3,195,029	-		GFF3122	0.81	+0.7
3,195,029	-		GFF3122	0.81	-0.6
3,195,031	+		GFF3122	0.81	-0.7
3,195,045	+		GFF3122	0.82	+0.8
3,195,045	+		GFF3122	0.82	-0.2
3,195,045	+		GFF3122	0.82	-0.8
3,195,045	+		GFF3122	0.82	-3.1
3,195,053	-		GFF3122	0.83	-0.1
3,195,053	-		GFF3122	0.83	-0.1
3,195,053	-		GFF3122	0.83	+0.0
3,195,115	-		GFF3122	0.88	+0.4
3,195,138	-		GFF3122	0.89	-0.3
3,195,138	-		GFF3122	0.89	+0.6
3,195,148	-				+0.9
3,195,164	+				-0.6
3,195,183	-				+1.7
3,195,187	+				+0.7
3,195,192	+				+1.6
3,195,192	+				-0.7
3,195,192	+				+0.2
3,195,192	+				+0.2
3,195,192	+				-1.9
3,195,192	+				-2.0
3,195,192	+				+0.9
3,195,192	+				+0.4
3,195,197	+				+0.5
3,195,200	-				-1.7
3,195,200	-				+0.7
3,195,200	-				+0.4
3,195,200	-				-0.1
3,195,200	-				+0.0
3,195,200	-				+0.3
3,195,200	-				-0.5
3,195,200	-				-0.6
3,195,200	-				-1.2
3,195,205	-				+0.7
3,195,205	-				+0.5
3,195,205	-				+0.0
3,195,205	-				-1.9
3,195,209	+				+0.4
3,195,209	+				-1.0
3,195,209	+				+1.1
3,195,209	+				-0.4
3,195,209	+				-0.3
3,195,209	+				+0.1
3,195,209	+				-2.6
3,195,209	+				+0.2
3,195,209	+				-0.6
3,195,209	+				-0.0
3,195,210	-				-2.2
3,195,217	-				-1.0
3,195,217	-				-0.1
3,195,217	-				-0.6
3,195,217	-				-0.7
3,195,217	-				-0.5
3,195,217	-				+0.1
3,195,217	-				-1.6
3,195,217	-				-1.6
3,195,217	-				-0.4
3,195,217	-				+0.5
3,195,217	-				+1.5
3,195,217	-				-3.6
3,195,217	-				+0.2
3,195,246	-				-1.1
3,195,251	-				+1.4
3,195,251	-				+1.1
3,195,404	-				+0.7
3,195,404	-				+1.1
3,195,411	+				-0.2
3,195,414	-				-0.6
3,195,414	-				-0.1
3,195,431	-				-1.7
3,195,462	+		GFF3123	0.13	+0.0
3,195,462	+		GFF3123	0.13	+0.3
3,195,465	-		GFF3123	0.13	+0.4
3,195,470	-		GFF3123	0.14	+0.4
3,195,470	-		GFF3123	0.14	-0.5
3,195,470	-		GFF3123	0.14	+1.1
3,195,470	-		GFF3123	0.14	-2.2
3,195,497	-		GFF3123	0.18	+1.8
3,195,514	+		GFF3123	0.20	-1.1
3,195,529	+		GFF3123	0.22	+0.4
3,195,534	+		GFF3123	0.22	-1.7
3,195,534	+		GFF3123	0.22	-0.9
3,195,537	-		GFF3123	0.23	+0.2
3,195,542	-		GFF3123	0.23	+0.1
3,195,542	-		GFF3123	0.23	+0.5
3,195,542	-		GFF3123	0.23	-2.6
3,195,542	-		GFF3123	0.23	-2.8
3,195,542	-		GFF3123	0.23	+0.4
3,195,557	-		GFF3123	0.25	-0.3
3,195,591	-		GFF3123	0.30	+1.6
3,195,653	-		GFF3123	0.37	+0.9
3,195,661	+		GFF3123	0.38	-1.2
3,195,667	-		GFF3123	0.39	-2.4
3,195,679	-		GFF3123	0.41	-1.6
3,195,680	+		GFF3123	0.41	-0.3
3,195,681	-		GFF3123	0.41	-0.5
3,195,681	-		GFF3123	0.41	+0.8
3,195,694	+		GFF3123	0.43	-0.9
3,195,694	+		GFF3123	0.43	-0.6
3,195,694	-		GFF3123	0.43	-1.6
3,195,702	-		GFF3123	0.44	-2.1
3,195,702	-		GFF3123	0.44	-0.1
3,195,714	+		GFF3123	0.45	-0.9
3,195,714	+		GFF3123	0.45	+1.0
3,195,714	+		GFF3123	0.45	-1.2
3,195,714	+		GFF3123	0.45	+0.7
3,195,714	+		GFF3123	0.45	+0.5
3,195,722	-		GFF3123	0.46	+0.5
3,195,748	+		GFF3123	0.49	-1.5
3,195,769	-		GFF3123	0.52	+0.2
3,195,805	+		GFF3123	0.57	-0.5
3,195,805	+		GFF3123	0.57	-1.3
3,195,805	+		GFF3123	0.57	+1.5
3,195,805	+		GFF3123	0.57	-0.5
3,195,811	+		GFF3123	0.58	+0.8
3,195,811	+		GFF3123	0.58	-1.7
3,195,842	+		GFF3123	0.61	-0.2
3,195,862	+		GFF3123	0.64	-0.1
3,195,890	+		GFF3123	0.68	+0.1
3,195,890	+		GFF3123	0.68	+1.1
3,195,890	+		GFF3123	0.68	-1.0
3,195,915	+		GFF3123	0.71	-1.1
3,195,928	+		GFF3123	0.72	+0.4
3,195,936	-		GFF3123	0.73	-1.6
3,195,962	-		GFF3123	0.77	+0.1
3,195,991	+		GFF3123	0.80	-0.1
3,195,992	+		GFF3123	0.81	+0.6
3,196,000	-		GFF3123	0.82	+0.9
3,196,000	-		GFF3123	0.82	+0.1
3,196,033	+		GFF3123	0.86	+1.4
3,196,033	+		GFF3123	0.86	-0.6
3,196,033	+		GFF3123	0.86	-1.0
3,196,033	+		GFF3123	0.86	-1.9
3,196,041	-		GFF3123	0.87	-2.3
3,196,041	-		GFF3123	0.87	-0.0
3,196,041	-		GFF3123	0.87	+0.3
3,196,041	-		GFF3123	0.87	-0.2
3,196,041	-		GFF3123	0.87	+0.1
3,196,042	-		GFF3123	0.87	+0.3
3,196,052	-		GFF3123	0.88	+0.3
3,196,052	-		GFF3123	0.88	+0.7
3,196,071	+				+0.4
3,196,098	+				+0.1
3,196,098	+				+0.8
3,196,098	+				-0.6
3,196,098	+				-0.6
3,196,098	+				-0.9
3,196,106	-				-0.9
3,196,106	-				-0.0
3,196,106	-				+1.2
3,196,106	-				+1.2
3,196,116	+				-1.6
3,196,116	+				+1.4
3,196,124	-				+0.5
3,196,124	-				+1.7
3,196,161	-				-1.0
3,196,162	+				-0.5
3,196,207	+				-1.4
3,196,213	+				+0.3
3,196,213	+				-0.1
3,196,221	-				+0.0
3,196,221	-				-0.2
3,196,221	-				-1.8
3,196,221	-				+0.2
3,196,237	-				-2.0
3,196,237	-				+1.4
3,196,237	-				-1.1
3,196,247	-				+0.0
3,196,247	-				-0.6
3,196,262	+				-0.8
3,196,267	+				-1.4
3,196,270	-				-1.0
3,196,275	-				-0.6
3,196,315	-				-1.3
3,196,317	+				-1.5
3,196,374	+		GFF3124	0.15	-0.2
3,196,374	+		GFF3124	0.15	+1.0
3,196,374	-		GFF3124	0.15	+0.0
3,196,374	-		GFF3124	0.15	-1.0
3,196,382	-		GFF3124	0.16	+1.0
3,196,382	-		GFF3124	0.16	+1.1
3,196,382	-		GFF3124	0.16	+0.7
3,196,382	-		GFF3124	0.16	-1.6
3,196,382	-		GFF3124	0.16	-0.1
3,196,382	-		GFF3124	0.16	+0.4
3,196,399	+		GFF3124	0.18	-0.2
3,196,412	+		GFF3124	0.19	-0.5
3,196,412	+		GFF3124	0.19	-0.7
3,196,412	+		GFF3124	0.19	+0.8
3,196,412	+		GFF3124	0.19	+0.9
3,196,412	+		GFF3124	0.19	+0.4
3,196,412	+		GFF3124	0.19	-1.6
3,196,412	+		GFF3124	0.19	+0.4
3,196,412	+		GFF3124	0.19	+0.7
3,196,418	+		GFF3124	0.19	+0.4
3,196,420	-		GFF3124	0.19	+0.0
3,196,430	-		GFF3124	0.20	+1.4
3,196,447	+		GFF3124	0.22	+0.5
3,196,455	-		GFF3124	0.23	-1.7
3,196,465	-		GFF3124	0.24	-0.7
3,196,498	+		GFF3124	0.27	+1.8
3,196,555	-		GFF3124	0.32	-0.9
3,196,555	-		GFF3124	0.32	+1.1
3,196,575	+		GFF3124	0.34	+1.7
3,196,576	-		GFF3124	0.34	-0.4
3,196,604	+		GFF3124	0.37	+1.8
3,196,606	+		GFF3124	0.37	+0.1
3,196,611	+		GFF3124	0.37	+0.1
3,196,612	-		GFF3124	0.37	-0.9
3,196,612	-		GFF3124	0.37	-0.6
3,196,612	-		GFF3124	0.37	-1.5
3,196,614	-		GFF3124	0.38	+0.7
3,196,630	+		GFF3124	0.39	-1.0
3,196,640	+		GFF3124	0.40	-0.8
3,196,648	-		GFF3124	0.41	+1.7
3,196,648	-		GFF3124	0.41	-0.7
3,196,659	+		GFF3124	0.42	-0.6
3,196,660	-		GFF3124	0.42	-2.0
3,196,674	+		GFF3124	0.43	+0.5
3,196,677	-		GFF3124	0.43	+0.5
3,196,677	-		GFF3124	0.43	-0.2
3,196,688	-		GFF3124	0.44	-1.0
3,196,728	+		GFF3124	0.48	-0.2
3,196,744	-		GFF3124	0.50	-2.5
3,196,744	-		GFF3124	0.50	+0.1
3,196,744	-		GFF3124	0.50	+0.1
3,196,775	-		GFF3124	0.52	-0.4
3,196,785	+		GFF3124	0.53	-1.6
3,196,785	+		GFF3124	0.53	-1.7
3,196,793	+		GFF3124	0.54	+0.0
3,196,816	-		GFF3124	0.56	-0.6
3,196,846	+		GFF3124	0.59	-1.2
3,196,872	-		GFF3124	0.61	+0.4
3,196,885	-		GFF3124	0.63	-0.2
3,196,887	+		GFF3124	0.63	-0.7
3,196,897	+		GFF3124	0.64	+0.5
3,196,901	+		GFF3124	0.64	-0.6
3,196,901	+		GFF3124	0.64	-0.7
3,196,905	-		GFF3124	0.65	+0.5
3,196,909	-		GFF3124	0.65	-0.5
3,196,924	-		GFF3124	0.66	-0.1
3,196,924	-		GFF3124	0.66	-1.3
3,196,947	-		GFF3124	0.68	-2.6
3,196,984	+		GFF3124	0.72	-1.6
3,196,984	+		GFF3124	0.72	-0.2
3,197,027	+		GFF3124	0.76	-0.1
3,197,027	+		GFF3124	0.76	-0.6
3,197,035	+		GFF3124	0.77	+2.1
3,197,035	+		GFF3124	0.77	-0.5
3,197,050	+		GFF3124	0.78	-1.6
3,197,098	-		GFF3124	0.82	-0.3
3,197,104	-		GFF3124	0.83	+0.2
3,197,127	+		GFF3124	0.85	-0.2
3,197,135	-		GFF3124	0.86	-1.7
3,197,135	-		GFF3124	0.86	-0.1
3,197,135	-		GFF3124	0.86	+0.5
3,197,137	+		GFF3124	0.86	-0.1