Strain Fitness in Sphingobium sp. HT1-2 around GFF3112

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,182,795	+		GFF3111	0.11	-0.9
3,182,803	-		GFF3111	0.12	-1.5
3,182,843	-		GFF3111	0.16	+1.2
3,182,844	+		GFF3111	0.16	+1.7
3,182,854	+		GFF3111	0.17	+1.4
3,182,876	-		GFF3111	0.20	+0.9
3,182,878	-		GFF3111	0.20	-0.2
3,182,880	+		GFF3111	0.20	-0.6
3,182,880	+		GFF3111	0.20	+0.2
3,182,892	+		GFF3111	0.21	+0.5
3,182,892	+		GFF3111	0.21	+0.2
3,182,892	+		GFF3111	0.21	-1.6
3,182,892	+		GFF3111	0.21	-0.5
3,182,900	-		GFF3111	0.22	+0.2
3,182,900	-		GFF3111	0.22	-0.2
3,182,900	-		GFF3111	0.22	-0.9
3,182,900	-		GFF3111	0.22	-0.3
3,182,900	-		GFF3111	0.22	+0.8
3,182,900	-		GFF3111	0.22	+0.6
3,182,900	-		GFF3111	0.22	+0.5
3,182,900	-		GFF3111	0.22	-0.0
3,182,900	-		GFF3111	0.22	-2.1
3,182,907	-		GFF3111	0.23	+0.3
3,182,907	-		GFF3111	0.23	-1.3
3,182,909	+		GFF3111	0.23	-2.9
3,182,911	-		GFF3111	0.24	+0.5
3,182,911	-		GFF3111	0.24	-0.4
3,182,911	-		GFF3111	0.24	-1.8
3,182,911	-		GFF3111	0.24	-1.0
3,182,922	+		GFF3111	0.25	+1.2
3,182,930	-		GFF3111	0.26	+0.4
3,182,954	-		GFF3111	0.28	+0.3
3,182,963	+		GFF3111	0.29	-0.8
3,182,964	-		GFF3111	0.29	-1.1
3,182,965	-		GFF3111	0.29	-0.6
3,182,980	+		GFF3111	0.31	+0.1
3,182,981	+		GFF3111	0.31	+0.5
3,182,986	+		GFF3111	0.32	+1.1
3,182,988	-		GFF3111	0.32	-1.3
3,182,988	-		GFF3111	0.32	-0.2
3,182,988	-		GFF3111	0.32	+0.2
3,182,988	-		GFF3111	0.32	-0.4
3,182,988	-		GFF3111	0.32	+0.8
3,183,007	-		GFF3111	0.34	-0.1
3,183,051	-		GFF3111	0.39	-1.8
3,183,105	-		GFF3111	0.44	+0.2
3,183,127	-		GFF3111	0.47	-0.3
3,183,127	-		GFF3111	0.47	+0.4
3,183,127	-		GFF3111	0.47	+0.8
3,183,128	-		GFF3111	0.47	-0.4
3,183,150	+		GFF3111	0.49	+0.7
3,183,164	-		GFF3111	0.51	-0.3
3,183,165	-		GFF3111	0.51	+1.3
3,183,190	-		GFF3111	0.54	-0.1
3,183,195	-		GFF3111	0.54	-0.6
3,183,213	+		GFF3111	0.56	+0.6
3,183,213	+		GFF3111	0.56	-0.2
3,183,213	+		GFF3111	0.56	-0.5
3,183,213	+		GFF3111	0.56	-0.2
3,183,213	+		GFF3111	0.56	-0.6
3,183,213	+		GFF3111	0.56	-0.5
3,183,213	+		GFF3111	0.56	+0.5
3,183,221	-		GFF3111	0.57	-1.0
3,183,221	-		GFF3111	0.57	-0.3
3,183,221	-		GFF3111	0.57	-0.1
3,183,221	-		GFF3111	0.57	+0.4
3,183,221	-		GFF3111	0.57	-0.8
3,183,223	-		GFF3111	0.57	-0.5
3,183,230	+		GFF3111	0.58	+0.1
3,183,243	+		GFF3111	0.59	-0.1
3,183,246	+		GFF3111	0.60	+0.7
3,183,342	+		GFF3111	0.70	+1.5
3,183,342	+		GFF3111	0.70	+0.3
3,183,342	+		GFF3111	0.70	+0.5
3,183,342	+		GFF3111	0.70	+0.2
3,183,342	+		GFF3111	0.70	+0.8
3,183,342	+		GFF3111	0.70	-0.9
3,183,350	-		GFF3111	0.71	+1.1
3,183,350	-		GFF3111	0.71	+0.2
3,183,355	+		GFF3111	0.71	-0.6
3,183,374	+		GFF3111	0.73	-0.6
3,183,382	-		GFF3111	0.74	-2.0
3,183,403	+		GFF3111	0.77	-1.1
3,183,403	+		GFF3111	0.77	-0.3
3,183,414	+		GFF3111	0.78	-0.5
3,183,414	+		GFF3111	0.78	-1.2
3,183,414	+		GFF3111	0.78	+0.9
3,183,414	+		GFF3111	0.78	-1.5
3,183,414	+		GFF3111	0.78	+0.7
3,183,414	+		GFF3111	0.78	-0.5
3,183,414	+		GFF3111	0.78	+1.0
3,183,414	+		GFF3111	0.78	-0.4
3,183,422	-		GFF3111	0.79	-2.3
3,183,422	-		GFF3111	0.79	-2.0
3,183,422	-		GFF3111	0.79	-0.1
3,183,422	-		GFF3111	0.79	-1.8
3,183,422	-		GFF3111	0.79	-2.6
3,183,422	-		GFF3111	0.79	+1.7
3,183,422	-		GFF3111	0.79	+0.8
3,183,422	-		GFF3111	0.79	-0.5
3,183,422	-		GFF3111	0.79	-1.2
3,183,458	+		GFF3111	0.83	+0.3
3,183,458	+		GFF3111	0.83	-1.0
3,183,466	-		GFF3111	0.83	-0.6
3,183,466	-		GFF3111	0.83	+0.7
3,183,511	+		GFF3111	0.88	+0.7
3,183,511	+		GFF3111	0.88	-0.5
3,183,550	+				+0.8
3,183,554	+				+0.9
3,183,570	+				+0.6
3,183,570	+				+0.7
3,183,583	+				-0.5
3,183,585	+				-0.5
3,183,598	-				+1.0
3,183,598	-				-0.3
3,183,604	-				+0.3
3,183,626	+				-0.8
3,183,629	-				+1.1
3,183,630	-				+0.8
3,183,635	-				-1.5
3,183,637	-				+0.8
3,183,637	-				+0.6
3,183,637	-				-0.3
3,183,647	+				-0.0
3,183,670	-				+0.8
3,183,708	-				+0.3
3,183,721	-				-1.6
3,183,734	+				-0.8
3,183,806	+				+0.8
3,183,808	+				-0.3
3,183,814	-				-1.7
3,183,814	-				-2.0
3,183,814	-				-0.6
3,183,814	-				-0.1
3,183,816	-		GFF3112	0.10	-1.1
3,183,816	-		GFF3112	0.10	-1.2
3,183,816	-		GFF3112	0.10	+0.0
3,183,818	+		GFF3112	0.10	+0.3
3,183,824	+		GFF3112	0.11	-0.8
3,183,826	-		GFF3112	0.11	-0.5
3,183,826	-		GFF3112	0.11	+0.9
3,183,832	-		GFF3112	0.12	-0.9
3,183,833	+		GFF3112	0.12	-0.6
3,183,855	+		GFF3112	0.15	+0.5
3,183,862	-		GFF3112	0.15	-0.1
3,183,877	+		GFF3112	0.17	+0.7
3,183,882	+		GFF3112	0.18	-1.6
3,183,882	+		GFF3112	0.18	-0.9
3,183,882	+		GFF3112	0.18	-0.2
3,183,902	+		GFF3112	0.20	+0.6
3,183,902	+		GFF3112	0.20	+0.5
3,183,902	+		GFF3112	0.20	-0.9
3,183,902	+		GFF3112	0.20	-0.4
3,183,902	+		GFF3112	0.20	-1.3
3,183,902	+		GFF3112	0.20	+0.1
3,183,902	+		GFF3112	0.20	-3.6
3,183,906	+		GFF3112	0.21	+0.9
3,183,907	+		GFF3112	0.21	-1.2
3,183,907	+		GFF3112	0.21	+0.8
3,183,907	+		GFF3112	0.21	+0.3
3,183,910	-		GFF3112	0.21	-0.2
3,183,910	-		GFF3112	0.21	-2.0
3,183,910	-		GFF3112	0.21	-0.8
3,183,914	-		GFF3112	0.21	-0.0
3,183,915	-		GFF3112	0.22	-2.3
3,183,923	+		GFF3112	0.22	+0.0
3,183,923	+		GFF3112	0.22	+0.5
3,183,933	+		GFF3112	0.24	-1.1
3,183,936	-		GFF3112	0.24	-0.1
3,183,940	+		GFF3112	0.24	-0.3
3,183,941	-		GFF3112	0.25	-1.3
3,183,962	-		GFF3112	0.27	-1.7
3,183,971	-		GFF3112	0.28	-0.5
3,183,982	-		GFF3112	0.29	-1.7
3,183,984	+		GFF3112	0.29	-1.6
3,183,984	+		GFF3112	0.29	-0.1
3,183,984	+		GFF3112	0.29	-0.2
3,183,984	+		GFF3112	0.29	+1.0
3,183,984	+		GFF3112	0.29	-1.3
3,183,984	+		GFF3112	0.29	-1.2
3,183,984	+		GFF3112	0.29	+0.1
3,183,984	+		GFF3112	0.29	-1.6
3,183,984	+		GFF3112	0.29	-0.0
3,183,984	+		GFF3112	0.29	-0.1
3,183,989	+		GFF3112	0.30	-1.7
3,183,992	-		GFF3112	0.30	+1.4
3,183,992	-		GFF3112	0.30	-0.5
3,183,992	-		GFF3112	0.30	+0.5
3,183,992	-		GFF3112	0.30	-1.0
3,183,992	-		GFF3112	0.30	-1.5
3,183,998	-		GFF3112	0.31	-0.1
3,184,009	+		GFF3112	0.32	+1.3
3,184,024	-		GFF3112	0.34	+1.0
3,184,027	+		GFF3112	0.34	+0.0
3,184,028	-		GFF3112	0.34	+0.4
3,184,034	-		GFF3112	0.35	+0.0
3,184,035	-		GFF3112	0.35	+1.4
3,184,088	-		GFF3112	0.41	-1.3
3,184,091	+		GFF3112	0.42	+0.5
3,184,091	+		GFF3112	0.42	+0.7
3,184,091	+		GFF3112	0.42	+1.9
3,184,093	-		GFF3112	0.42	-0.4
3,184,099	-		GFF3112	0.43	+1.4
3,184,137	-		GFF3112	0.47	+0.9
3,184,144	+		GFF3112	0.48	+1.0
3,184,144	+		GFF3112	0.48	-0.7
3,184,144	+		GFF3112	0.48	-0.1
3,184,144	+		GFF3112	0.48	-1.5
3,184,144	+		GFF3112	0.48	+0.8
3,184,145	+		GFF3112	0.48	-0.4
3,184,152	-		GFF3112	0.49	-0.1
3,184,152	-		GFF3112	0.49	-1.4
3,184,152	-		GFF3112	0.49	-1.3
3,184,157	-		GFF3112	0.49	+1.5
3,184,163	+		GFF3112	0.50	-0.5
3,184,163	+		GFF3112	0.50	+0.4
3,184,198	-		GFF3112	0.54	+0.5
3,184,201	-		GFF3112	0.54	-0.3
3,184,203	+		GFF3112	0.55	-1.0
3,184,227	+		GFF3112	0.57	+1.0
3,184,235	-		GFF3112	0.58	-1.2
3,184,235	-		GFF3112	0.58	-0.5
3,184,235	-		GFF3112	0.58	-0.2
3,184,238	-		GFF3112	0.59	-0.1
3,184,241	+		GFF3112	0.59	-1.2
3,184,247	+		GFF3112	0.60	+0.1
3,184,249	-		GFF3112	0.60	-2.7
3,184,249	-		GFF3112	0.60	-0.7
3,184,288	+		GFF3112	0.64	-0.2
3,184,298	-		GFF3112	0.65	-0.7
3,184,304	-		GFF3112	0.66	+0.7
3,184,306	-		GFF3112	0.66	-0.7
3,184,339	+		GFF3112	0.70	-1.1
3,184,357	-		GFF3112	0.72	-0.5
3,184,369	+		GFF3112	0.74	-1.1
3,184,371	+		GFF3112	0.74	-0.1
3,184,371	+		GFF3112	0.74	-1.7
3,184,371	+		GFF3112	0.74	+0.6
3,184,371	+		GFF3112	0.74	-0.6
3,184,379	+		GFF3112	0.75	-0.6
3,184,379	-		GFF3112	0.75	-0.5
3,184,389	+		GFF3112	0.76	-0.4
3,184,415	-		GFF3112	0.79	-0.6
3,184,420	-		GFF3112	0.79	-0.6
3,184,428	+		GFF3112	0.80	+0.6
3,184,432	-		GFF3112	0.81	+2.0
3,184,448	+		GFF3112	0.83	-0.1
3,184,456	-		GFF3112	0.84	-1.1
3,184,456	-		GFF3112	0.84	-1.0
3,184,473	+		GFF3112	0.85	-1.0
3,184,479	+		GFF3112	0.86	-0.2
3,184,479	+		GFF3112	0.86	-1.1
3,184,481	+		GFF3112	0.86	+1.2
3,184,481	-		GFF3112	0.86	-1.1
3,184,482	-		GFF3112	0.86	+0.2
3,184,483	+		GFF3112	0.87	+0.4
3,184,487	-		GFF3112	0.87	-1.6
3,184,493	+		GFF3112	0.88	-2.3
3,184,508	+		GFF3112	0.89	-1.5
3,184,538	-				-1.1
3,184,538	-				+0.3
3,184,585	+				-0.4
3,184,585	+				-1.2
3,184,585	+				+0.6
3,184,585	+				+1.1
3,184,585	+				-1.7
3,184,585	+				-0.0
3,184,591	-				-1.7
3,184,591	-				-0.9
3,184,593	+				+1.0
3,184,593	-				-1.5
3,184,593	-				-1.0
3,184,593	-				-0.5
3,184,610	+				-0.3
3,184,619	+				-0.3
3,184,683	+				+0.9
3,184,700	+				+0.1
3,184,727	+				-0.5
3,184,727	-				-0.3
3,184,753	+		GFF3113	0.11	-0.2
3,184,753	+		GFF3113	0.11	+0.4
3,184,776	-		GFF3113	0.16	-2.7
3,184,782	+		GFF3113	0.17	-0.1
3,184,785	-		GFF3113	0.17	+1.4
3,184,792	+		GFF3113	0.19	-0.1
3,184,792	+		GFF3113	0.19	-1.5
3,184,792	+		GFF3113	0.19	+0.5
3,184,792	+		GFF3113	0.19	+0.3
3,184,792	+		GFF3113	0.19	-0.5
3,184,792	+		GFF3113	0.19	+0.4
3,184,792	+		GFF3113	0.19	-0.5
3,184,800	-		GFF3113	0.21	+0.4
3,184,800	-		GFF3113	0.21	-0.6
3,184,800	-		GFF3113	0.21	-0.1
3,184,800	-		GFF3113	0.21	+0.1
3,184,800	-		GFF3113	0.21	+1.7
3,184,800	-		GFF3113	0.21	-0.7
3,184,811	+		GFF3113	0.23	+0.1
3,184,898	+		GFF3113	0.41	+2.4
3,184,907	-		GFF3113	0.43	-1.3
3,184,909	+		GFF3113	0.43	-0.5
3,184,919	+		GFF3113	0.45	+0.4
3,184,928	-		GFF3113	0.47	-0.1
3,184,928	-		GFF3113	0.47	-0.4
3,184,933	-		GFF3113	0.48	-1.8
3,184,964	-		GFF3113	0.54	+0.8
3,185,017	+		GFF3113	0.65	-2.1
3,185,026	+		GFF3113	0.67	-2.2
3,185,078	-		GFF3113	0.78	-0.3
3,185,078	-		GFF3113	0.78	-0.1
3,185,083	+		GFF3113	0.79	-0.5
3,185,101	+		GFF3113	0.83	-0.5
3,185,106	+		GFF3113	0.84	+1.9
3,185,109	-		GFF3113	0.84	+0.8
3,185,109	-		GFF3113	0.84	+0.7
3,185,109	-		GFF3113	0.84	+1.4
3,185,114	-		GFF3113	0.85	-1.5
3,185,114	-		GFF3113	0.85	-1.7
3,185,120	+		GFF3113	0.86	+0.2
3,185,120	+		GFF3113	0.86	-0.6
3,185,120	+		GFF3113	0.86	-0.5
3,185,120	+		GFF3113	0.86	-1.3
3,185,128	-		GFF3113	0.88	-2.0
3,185,128	-		GFF3113	0.88	+0.3
3,185,128	-		GFF3113	0.88	+0.1
3,185,128	-		GFF3113	0.88	+1.0
3,185,145	-				-0.2
3,185,145	-				+1.5
3,185,147	+				+0.9
3,185,149	+				-0.8
3,185,155	-				-0.5
3,185,176	-				+0.7
3,185,191	+				-2.2
3,185,203	+				+1.0
3,185,203	+				-0.2
3,185,203	+				+0.8
3,185,203	+				-2.4
3,185,203	+				-0.1
3,185,203	+				-0.6
3,185,211	-				-1.9
3,185,211	-				-1.0
3,185,211	-				-0.6
3,185,211	-				-0.4
3,185,211	-				-1.2
3,185,211	-				-1.1
3,185,229	+				+0.8
3,185,229	+				+0.0
3,185,237	-				-1.2
3,185,259	+				-1.3
3,185,262	-				+0.3
3,185,269	+				-0.5
3,185,304	-				+0.1
3,185,344	+				-2.2
3,185,347	-				-0.8
3,185,375	-				+0.7
3,185,377	+				-0.0
3,185,377	+				+0.5
3,185,382	+				+0.0
3,185,382	+				+0.8
3,185,382	+				-1.1
3,185,390	-				-0.3
3,185,390	-				+0.7
3,185,403	-				+1.2
3,185,421	+				+1.1
3,185,421	+				-0.8
3,185,426	+				-1.3
3,185,427	+				+0.2
3,185,434	-				-0.1
3,185,434	-				+0.6
3,185,435	-				-1.0
3,185,450	+		GFF3114	0.11	-1.3
3,185,463	-		GFF3114	0.11	-1.8
3,185,468	-		GFF3114	0.11	+0.3
3,185,494	+		GFF3114	0.13	+0.6
3,185,502	-		GFF3114	0.13	+0.8
3,185,503	+		GFF3114	0.13	-1.7
3,185,515	+		GFF3114	0.14	-0.1
3,185,524	+		GFF3114	0.14	+0.2
3,185,543	-		GFF3114	0.15	-0.4
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3,185,574	+		GFF3114	0.17	-0.9
3,185,579	+		GFF3114	0.17	-1.9
3,185,582	-		GFF3114	0.17	+0.0
3,185,588	+		GFF3114	0.17	+2.2
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3,185,592	-		GFF3114	0.17	-0.3