Strain Fitness in Sphingobium sp. HT1-2 around GFF3105

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,175,722	-		GFF3104	0.77	-0.9
3,175,731	+		GFF3104	0.77	-1.4
3,175,731	+		GFF3104	0.77	-0.4
3,175,737	-		GFF3104	0.77	-0.1
3,175,739	-		GFF3104	0.77	-0.6
3,175,739	-		GFF3104	0.77	-0.1
3,175,744	+		GFF3104	0.77	+0.5
3,175,745	-		GFF3104	0.77	-0.1
3,175,758	-		GFF3104	0.78	+0.0
3,175,762	+		GFF3104	0.78	+0.2
3,175,762	+		GFF3104	0.78	+0.6
3,175,762	+		GFF3104	0.78	+0.6
3,175,762	+		GFF3104	0.78	-1.5
3,175,762	+		GFF3104	0.78	-0.0
3,175,762	+		GFF3104	0.78	+0.5
3,175,762	+		GFF3104	0.78	-1.1
3,175,762	+		GFF3104	0.78	-0.6
3,175,762	+		GFF3104	0.78	-0.9
3,175,762	+		GFF3104	0.78	+0.1
3,175,767	+		GFF3104	0.78	-0.1
3,175,770	-		GFF3104	0.78	-1.4
3,175,770	-		GFF3104	0.78	-0.5
3,175,770	-		GFF3104	0.78	+0.5
3,175,770	-		GFF3104	0.78	-0.7
3,175,770	-		GFF3104	0.78	-0.2
3,175,770	-		GFF3104	0.78	-0.1
3,175,770	-		GFF3104	0.78	-0.4
3,175,770	-		GFF3104	0.78	+0.0
3,175,770	-		GFF3104	0.78	+0.9
3,175,770	-		GFF3104	0.78	-0.2
3,175,770	-		GFF3104	0.78	-0.7
3,175,770	-		GFF3104	0.78	-1.2
3,175,770	-		GFF3104	0.78	+0.3
3,175,770	-		GFF3104	0.78	+0.2
3,175,770	-		GFF3104	0.78	-0.1
3,175,775	-		GFF3104	0.78	-0.7
3,175,786	-		GFF3104	0.79	+0.5
3,175,806	+		GFF3104	0.79	-0.5
3,175,811	+		GFF3104	0.79	-0.3
3,175,814	-		GFF3104	0.79	+0.3
3,175,816	-		GFF3104	0.79	+0.5
3,175,819	-		GFF3104	0.79	+0.5
3,175,832	+		GFF3104	0.80	+0.8
3,175,841	+		GFF3104	0.80	-1.1
3,175,841	+		GFF3104	0.80	-1.6
3,175,849	+		GFF3104	0.80	+0.1
3,175,851	+		GFF3104	0.80	-0.8
3,175,851	+		GFF3104	0.80	-0.6
3,175,857	-		GFF3104	0.81	-0.2
3,175,859	-		GFF3104	0.81	+0.8
3,175,870	-		GFF3104	0.81	+0.3
3,175,882	-		GFF3104	0.81	+1.1
3,175,898	+		GFF3104	0.82	-0.7
3,175,932	+		GFF3104	0.83	+0.2
3,175,932	+		GFF3104	0.83	+1.1
3,175,937	+		GFF3104	0.83	+0.7
3,175,940	-		GFF3104	0.83	+0.8
3,175,941	-		GFF3104	0.83	-0.5
3,175,941	-		GFF3104	0.83	-0.9
3,175,958	-		GFF3104	0.83	-1.2
3,175,958	-		GFF3104	0.83	-0.5
3,175,973	-		GFF3104	0.84	-1.3
3,175,984	+		GFF3104	0.84	+0.1
3,175,984	+		GFF3104	0.84	-0.7
3,175,988	+		GFF3104	0.84	-2.6
3,175,994	+		GFF3104	0.84	-1.3
3,175,996	-		GFF3104	0.84	+0.9
3,176,042	-		GFF3104	0.86	+0.0
3,176,065	-		GFF3104	0.86	+0.7
3,176,069	+		GFF3104	0.86	-2.2
3,176,084	+		GFF3104	0.87	+1.3
3,176,111	+		GFF3104	0.88	+0.1
3,176,118	+		GFF3104	0.88	-1.9
3,176,123	+		GFF3104	0.88	+0.5
3,176,124	-		GFF3104	0.88	-0.1
3,176,126	-		GFF3104	0.88	+0.8
3,176,126	-		GFF3104	0.88	+0.9
3,176,130	+		GFF3104	0.88	+1.3
3,176,141	-		GFF3104	0.88	-1.5
3,176,169	+		GFF3104	0.89	-0.1
3,176,169	+		GFF3104	0.89	-2.0
3,176,169	+		GFF3104	0.89	+0.0
3,176,169	+		GFF3104	0.89	+0.9
3,176,174	-		GFF3104	0.89	+0.9
3,176,174	-		GFF3104	0.89	-1.9
3,176,176	+		GFF3104	0.89	+0.6
3,176,177	-		GFF3104	0.89	+1.1
3,176,181	+		GFF3104	0.90	+0.3
3,176,181	+		GFF3104	0.90	-0.8
3,176,181	+		GFF3104	0.90	+0.1
3,176,181	+		GFF3104	0.90	+0.8
3,176,181	+		GFF3104	0.90	-0.3
3,176,181	+		GFF3104	0.90	-1.8
3,176,181	+		GFF3104	0.90	-1.0
3,176,181	+		GFF3104	0.90	+0.8
3,176,181	+		GFF3104	0.90	-0.3
3,176,189	-		GFF3104	0.90	-1.5
3,176,189	-		GFF3104	0.90	-1.2
3,176,189	-		GFF3104	0.90	-0.1
3,176,189	-		GFF3104	0.90	-0.3
3,176,189	-		GFF3104	0.90	-0.5
3,176,189	-		GFF3104	0.90	+0.3
3,176,189	-		GFF3104	0.90	-1.6
3,176,189	-		GFF3104	0.90	-0.2
3,176,189	-		GFF3104	0.90	-1.6
3,176,189	-		GFF3104	0.90	+0.1
3,176,189	-		GFF3104	0.90	-1.4
3,176,189	-		GFF3104	0.90	+0.8
3,176,189	-		GFF3104	0.90	-0.5
3,176,189	-		GFF3104	0.90	-1.8
3,176,189	-		GFF3104	0.90	-2.0
3,176,189	-		GFF3104	0.90	+0.3
3,176,194	-		GFF3104	0.90	-1.1
3,176,196	+				-0.8
3,176,204	-				+0.9
3,176,213	+				+1.7
3,176,221	-				-0.1
3,176,221	-				+0.4
3,176,232	+				-0.1
3,176,232	+				-1.0
3,176,258	+				-0.1
3,176,258	+				-0.5
3,176,266	-				+0.8
3,176,266	-				-0.4
3,176,266	-				+0.0
3,176,266	-				-2.2
3,176,276	-				+0.6
3,176,294	-				-0.3
3,176,302	+				-2.9
3,176,307	+				+1.0
3,176,307	+				-0.1
3,176,307	+				+0.7
3,176,307	+				+0.5
3,176,310	-				+0.3
3,176,312	+				-2.3
3,176,315	-				-1.8
3,176,315	-				+0.4
3,176,326	+				-0.8
3,176,326	+				-0.1
3,176,331	+				-1.1
3,176,349	+				-2.1
3,176,349	+				-0.6
3,176,349	+				+0.9
3,176,349	+				+0.2
3,176,349	+				-0.2
3,176,357	-				-1.1
3,176,357	-				-1.2
3,176,357	-				-2.7
3,176,370	-				-2.2
3,176,372	+				-0.7
3,176,372	+				-0.6
3,176,380	-				-0.3
3,176,380	-				-0.4
3,176,385	+				-1.0
3,176,385	+				-1.9
3,176,385	+				-1.0
3,176,393	-				-0.1
3,176,393	-				+0.1
3,176,393	-				+1.0
3,176,407	+				-1.8
3,176,407	+				+0.1
3,176,430	+				+0.4
3,176,439	-				+0.9
3,176,443	+				+0.2
3,176,500	+				-0.1
3,176,508	-				-0.5
3,176,509	+				+0.5
3,176,599	+				-1.4
3,176,652	+				+0.1
3,176,657	-				-0.6
3,176,702	-				+0.0
3,176,702	-				+0.1
3,176,716	-				-2.0
3,176,719	+				-0.3
3,176,733	+				-0.9
3,176,733	+				+1.0
3,176,733	+				-1.3
3,176,741	-				+0.5
3,176,746	+				-1.1
3,176,751	+		GFF3105	0.10	+0.5
3,176,751	+		GFF3105	0.10	-1.0
3,176,751	+		GFF3105	0.10	-1.2
3,176,751	+		GFF3105	0.10	+1.0
3,176,751	+		GFF3105	0.10	-1.2
3,176,751	+		GFF3105	0.10	-0.2
3,176,751	+		GFF3105	0.10	+0.2
3,176,751	+		GFF3105	0.10	-0.3
3,176,754	+		GFF3105	0.11	-0.9
3,176,756	+		GFF3105	0.11	-1.6
3,176,759	-		GFF3105	0.11	+0.3
3,176,759	-		GFF3105	0.11	+0.1
3,176,759	-		GFF3105	0.11	+0.2
3,176,759	-		GFF3105	0.11	-0.7
3,176,759	-		GFF3105	0.11	+0.3
3,176,759	-		GFF3105	0.11	+0.6
3,176,759	-		GFF3105	0.11	-1.6
3,176,773	+		GFF3105	0.13	-0.1
3,176,773	+		GFF3105	0.13	+1.0
3,176,773	+		GFF3105	0.13	+0.8
3,176,776	-		GFF3105	0.13	-2.0
3,176,781	-		GFF3105	0.14	+0.7
3,176,781	-		GFF3105	0.14	-0.1
3,176,781	-		GFF3105	0.14	-0.1
3,176,804	+		GFF3105	0.16	-0.1
3,176,804	+		GFF3105	0.16	-1.3
3,176,812	-		GFF3105	0.17	+0.9
3,176,812	-		GFF3105	0.17	-0.2
3,176,821	+		GFF3105	0.18	-1.1
3,176,825	+		GFF3105	0.18	-2.9
3,176,826	+		GFF3105	0.18	+0.3
3,176,829	-		GFF3105	0.19	+1.0
3,176,832	-		GFF3105	0.19	-0.7
3,176,833	-		GFF3105	0.19	-0.6
3,176,833	-		GFF3105	0.19	-0.1
3,176,834	-		GFF3105	0.19	-0.6
3,176,845	-		GFF3105	0.20	-0.5
3,176,870	-		GFF3105	0.23	-2.5
3,176,877	-		GFF3105	0.24	+1.5
3,176,904	+		GFF3105	0.26	-0.7
3,176,905	+		GFF3105	0.27	+0.1
3,176,912	+		GFF3105	0.27	+1.5
3,176,950	+		GFF3105	0.31	-3.1
3,176,960	+		GFF3105	0.32	-0.3
3,176,969	+		GFF3105	0.33	-1.1
3,176,969	+		GFF3105	0.33	-0.1
3,176,969	+		GFF3105	0.33	-1.5
3,176,977	-		GFF3105	0.34	+1.2
3,176,977	-		GFF3105	0.34	-1.8
3,176,977	-		GFF3105	0.34	-0.1
3,176,995	+		GFF3105	0.36	-1.6
3,177,014	-		GFF3105	0.38	+0.7
3,177,042	+		GFF3105	0.41	-1.6
3,177,050	-		GFF3105	0.42	-0.6
3,177,050	-		GFF3105	0.42	+0.1
3,177,050	-		GFF3105	0.42	-2.0
3,177,064	+		GFF3105	0.43	-2.0
3,177,078	+		GFF3105	0.45	-0.6
3,177,111	+		GFF3105	0.48	-1.6
3,177,130	+		GFF3105	0.50	-0.9
3,177,130	+		GFF3105	0.50	+0.1
3,177,130	+		GFF3105	0.50	-2.0
3,177,138	-		GFF3105	0.51	-1.3
3,177,138	-		GFF3105	0.51	-1.2
3,177,140	+		GFF3105	0.51	-0.3
3,177,148	-		GFF3105	0.52	-0.3
3,177,165	+		GFF3105	0.54	-0.1
3,177,227	-		GFF3105	0.60	-0.1
3,177,243	+		GFF3105	0.62	-0.9
3,177,251	-		GFF3105	0.63	-1.2
3,177,253	+		GFF3105	0.63	-2.1
3,177,261	+		GFF3105	0.64	-1.6
3,177,269	-		GFF3105	0.65	-2.0
3,177,273	+		GFF3105	0.65	+0.5
3,177,279	+		GFF3105	0.66	+0.4
3,177,310	-		GFF3105	0.69	-0.1
3,177,322	+		GFF3105	0.70	+0.6
3,177,339	+		GFF3105	0.72	-0.2
3,177,349	+		GFF3105	0.73	-1.9
3,177,352	-		GFF3105	0.74	-2.1
3,177,352	-		GFF3105	0.74	-2.3
3,177,357	-		GFF3105	0.74	-2.8
3,177,359	+		GFF3105	0.74	-1.1
3,177,359	+		GFF3105	0.74	-0.6
3,177,437	+		GFF3105	0.83	+0.2
3,177,437	+		GFF3105	0.83	+1.0
3,177,437	+		GFF3105	0.83	-0.2
3,177,445	-		GFF3105	0.83	-0.5
3,177,445	-		GFF3105	0.83	+0.4
3,177,450	-		GFF3105	0.84	+0.5
3,177,450	-		GFF3105	0.84	+0.6
3,177,463	+		GFF3105	0.85	-0.9
3,177,494	-		GFF3105	0.89	-0.2
3,177,516	-				+1.0
3,177,520	+				+0.3
3,177,520	+				+1.3
3,177,520	+				-1.2
3,177,528	-				+0.5
3,177,528	-				-0.5
3,177,528	-				-1.0
3,177,528	-				+0.8
3,177,528	-				-1.4
3,177,528	-				-1.3
3,177,528	-				+1.8
3,177,530	+				+0.4
3,177,530	+				+0.5
3,177,530	+				+0.3
3,177,538	-				-1.6
3,177,538	-				+1.1
3,177,538	-				-1.2
3,177,544	+				-0.6
3,177,548	+				-1.1
3,177,548	+				+1.5
3,177,548	+				-0.8
3,177,548	+				+0.5
3,177,548	+				+2.4
3,177,552	+				-0.2
3,177,552	+				+1.7
3,177,552	+				-2.9
3,177,553	+				-1.6
3,177,556	-				-1.2
3,177,556	-				-0.2
3,177,556	-				-0.0
3,177,556	-				-0.2
3,177,556	-				-1.2
3,177,560	-				-0.2
3,177,560	-				+1.2
3,177,561	-				+1.6
3,177,561	-				+0.5
3,177,571	-				-2.2
3,177,587	+				-0.1
3,177,587	-				-0.6
3,177,588	+				+0.1
3,177,588	+				+0.2
3,177,588	+				+0.5
3,177,588	+				+0.1
3,177,588	+				+0.7
3,177,593	+				+0.0
3,177,593	+				-0.6
3,177,596	-				+0.0
3,177,596	-				-1.9
3,177,596	-				-0.6
3,177,596	-				-1.1
3,177,596	-				-0.9
3,177,596	-				-1.3
3,177,596	-				-0.8
3,177,596	-				-0.7
3,177,596	-				-0.2
3,177,596	-				-0.3
3,177,596	-				-1.9
3,177,598	+				+0.9
3,177,601	-				+0.4
3,177,601	-				+0.7
3,177,606	-				-2.4
3,177,626	+				+1.5
3,177,629	-				-1.2
3,177,629	-				+1.2
3,177,702	-				+0.1
3,177,703	-				-0.8
3,177,712	+				-0.8
3,177,758	+				+0.3
3,177,766	+				-0.6
3,177,766	+				+0.7
3,177,766	+				-0.1
3,177,766	+				+0.4
3,177,766	+				+0.4
3,177,774	-				-1.0
3,177,774	-				+0.1
3,177,774	-				+1.0
3,177,774	-				-0.2
3,177,776	+				+0.2
3,177,776	+				-0.6
3,177,776	+				-1.7
3,177,776	+				-0.1
3,177,802	+		GFF3106	0.10	+0.4
3,177,820	-		GFF3106	0.12	+1.1
3,177,832	+		GFF3106	0.13	-0.3
3,177,832	+		GFF3106	0.13	-0.0
3,177,850	-		GFF3106	0.14	-1.0
3,177,860	-		GFF3106	0.15	-0.3
3,177,860	-		GFF3106	0.15	+1.0
3,177,865	-		GFF3106	0.16	+0.5
3,177,867	+		GFF3106	0.16	-2.0
3,177,885	-		GFF3106	0.18	-0.5
3,177,887	+		GFF3106	0.18	-2.8
3,177,889	-		GFF3106	0.18	-2.0
3,177,902	+		GFF3106	0.19	-0.5
3,177,949	-		GFF3106	0.23	-0.5
3,177,970	+		GFF3106	0.25	+0.0
3,177,970	+		GFF3106	0.25	+0.7
3,177,970	+		GFF3106	0.25	+0.2
3,177,978	-		GFF3106	0.26	-0.2
3,177,978	-		GFF3106	0.26	-0.3
3,177,986	-		GFF3106	0.26	-1.2
3,178,004	-		GFF3106	0.28	-0.4
3,178,010	+		GFF3106	0.29	-0.3
3,178,016	+		GFF3106	0.29	-2.2
3,178,021	+		GFF3106	0.30	-0.1
3,178,029	-		GFF3106	0.30	-1.7
3,178,039	-		GFF3106	0.31	+0.6
3,178,047	-		GFF3106	0.32	-0.2
3,178,059	+		GFF3106	0.33	-0.6
3,178,059	+		GFF3106	0.33	-0.1
3,178,059	+		GFF3106	0.33	-1.1
3,178,059	+		GFF3106	0.33	+0.8
3,178,059	+		GFF3106	0.33	+0.5
3,178,062	-		GFF3106	0.33	+1.7
3,178,062	-		GFF3106	0.33	+1.0
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