Strain Fitness in Sphingobium sp. HT1-2 around GFF3093

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,156,330	+		GFF3091	0.35	-0.8
3,156,332	-		GFF3091	0.35	-1.3
3,156,335	+		GFF3091	0.35	+0.3
3,156,343	+		GFF3091	0.37	-0.6
3,156,343	-		GFF3091	0.37	-1.1
3,156,343	-		GFF3091	0.37	+0.7
3,156,343	-		GFF3091	0.37	-0.4
3,156,351	-		GFF3091	0.38	-0.3
3,156,363	+		GFF3091	0.40	+0.7
3,156,366	-		GFF3091	0.40	+0.0
3,156,378	-		GFF3091	0.42	-0.6
3,156,378	-		GFF3091	0.42	+0.6
3,156,395	+		GFF3091	0.45	-0.6
3,156,409	-		GFF3091	0.47	-0.6
3,156,410	+		GFF3091	0.48	-1.8
3,156,410	+		GFF3091	0.48	-0.3
3,156,410	+		GFF3091	0.48	+1.1
3,156,410	+		GFF3091	0.48	+0.5
3,156,423	-		GFF3091	0.50	+1.9
3,156,427	+		GFF3091	0.50	-0.4
3,156,433	+		GFF3091	0.51	+1.4
3,156,433	+		GFF3091	0.51	-0.0
3,156,435	-		GFF3091	0.52	-0.1
3,156,436	-		GFF3091	0.52	-0.7
3,156,454	+		GFF3091	0.55	+0.7
3,156,458	+		GFF3091	0.55	+0.6
3,156,459	+		GFF3091	0.56	+0.2
3,156,462	-		GFF3091	0.56	+0.3
3,156,462	-		GFF3091	0.56	-1.5
3,156,466	-		GFF3091	0.57	-0.3
3,156,467	-		GFF3091	0.57	-0.8
3,156,467	-		GFF3091	0.57	-0.6
3,156,467	-		GFF3091	0.57	+0.2
3,156,472	-		GFF3091	0.58	-0.7
3,156,481	+		GFF3091	0.59	+0.5
3,156,483	+		GFF3091	0.59	-0.1
3,156,483	+		GFF3091	0.59	-1.2
3,156,488	+		GFF3091	0.60	-0.9
3,156,491	-		GFF3091	0.61	+0.4
3,156,491	-		GFF3091	0.61	-1.6
3,156,491	-		GFF3091	0.61	+0.8
3,156,491	-		GFF3091	0.61	-2.5
3,156,492	-		GFF3091	0.61	+1.0
3,156,516	-		GFF3091	0.65	+0.6
3,156,517	+		GFF3091	0.65	-1.6
3,156,519	+		GFF3091	0.65	+0.2
3,156,535	-		GFF3091	0.68	-0.8
3,156,558	+		GFF3091	0.72	-0.5
3,156,558	+		GFF3091	0.72	-0.3
3,156,558	+		GFF3091	0.72	-0.1
3,156,566	-		GFF3091	0.73	+0.4
3,156,566	-		GFF3091	0.73	-1.9
3,156,566	-		GFF3091	0.73	+0.4
3,156,568	+		GFF3091	0.73	+0.2
3,156,576	-		GFF3091	0.74	-1.7
3,156,579	-		GFF3091	0.75	+0.4
3,156,584	-		GFF3091	0.76	+0.5
3,156,584	-		GFF3091	0.76	-0.4
3,156,612	+		GFF3091	0.80	+0.1
3,156,620	-		GFF3091	0.82	-1.1
3,156,632	+		GFF3091	0.83	+0.0
3,156,647	-		GFF3091	0.86	+0.8
3,156,670	+		GFF3091	0.90	-0.2
3,156,698	+				-0.4
3,156,698	+				-1.0
3,156,703	+				-0.3
3,156,703	+				-0.2
3,156,703	+				-0.7
3,156,703	+				-0.4
3,156,703	+				+0.6
3,156,703	+				-0.4
3,156,703	+				-0.4
3,156,703	+				-0.3
3,156,703	+				-0.1
3,156,706	-				-1.3
3,156,706	-				+0.2
3,156,706	-				-1.1
3,156,711	-				+1.9
3,156,711	-				+0.7
3,156,713	-				+0.0
3,156,727	+				-0.3
3,156,740	-				-1.2
3,156,743	+				-0.3
3,156,758	+				-0.7
3,156,775	+				-1.2
3,156,780	+				+0.5
3,156,780	+				-0.2
3,156,783	-				-1.7
3,156,788	-				+0.3
3,156,788	-				-1.1
3,156,788	-				+1.9
3,156,792	+		GFF3092	0.10	-0.6
3,156,799	-		GFF3092	0.12	-2.2
3,156,799	-		GFF3092	0.12	+1.5
3,156,813	-		GFF3092	0.14	-2.4
3,156,815	+		GFF3092	0.14	-0.7
3,156,866	-		GFF3092	0.23	-0.5
3,156,876	+		GFF3092	0.24	+0.4
3,156,876	+		GFF3092	0.24	-0.1
3,156,886	+		GFF3092	0.26	-0.2
3,156,888	+		GFF3092	0.26	-0.2
3,156,896	-		GFF3092	0.28	-1.1
3,156,903	+		GFF3092	0.29	-0.2
3,156,906	-		GFF3092	0.29	+0.1
3,156,911	-		GFF3092	0.30	-0.9
3,156,941	-		GFF3092	0.35	+0.5
3,156,956	+		GFF3092	0.38	+0.4
3,156,963	-		GFF3092	0.39	-1.1
3,156,964	-		GFF3092	0.39	-1.8
3,156,966	+		GFF3092	0.40	+0.6
3,156,969	-		GFF3092	0.40	+0.2
3,156,974	-		GFF3092	0.41	-1.2
3,156,974	-		GFF3092	0.41	-0.2
3,156,999	+		GFF3092	0.45	-1.1
3,156,999	-		GFF3092	0.45	-0.6
3,157,004	+		GFF3092	0.46	+1.1
3,157,007	-		GFF3092	0.46	-0.3
3,157,007	-		GFF3092	0.46	+0.5
3,157,014	+		GFF3092	0.48	-1.8
3,157,014	+		GFF3092	0.48	+0.4
3,157,022	-		GFF3092	0.49	+0.5
3,157,024	+		GFF3092	0.49	+1.3
3,157,031	-		GFF3092	0.50	-1.6
3,157,044	+		GFF3092	0.53	-0.5
3,157,054	-		GFF3092	0.54	-1.0
3,157,058	-		GFF3092	0.55	-0.7
3,157,070	+		GFF3092	0.57	-0.5
3,157,075	+		GFF3092	0.58	-0.2
3,157,083	-		GFF3092	0.59	+0.2
3,157,085	+		GFF3092	0.59	+0.6
3,157,085	+		GFF3092	0.59	-0.4
3,157,089	-		GFF3092	0.60	+0.8
3,157,093	-		GFF3092	0.61	+0.0
3,157,093	-		GFF3092	0.61	+0.5
3,157,093	-		GFF3092	0.61	+0.1
3,157,111	-		GFF3092	0.64	+0.0
3,157,120	-		GFF3092	0.65	-1.0
3,157,128	-		GFF3092	0.67	-1.2
3,157,130	+		GFF3092	0.67	-0.5
3,157,142	-		GFF3092	0.69	+0.3
3,157,149	+		GFF3092	0.70	+0.5
3,157,149	+		GFF3092	0.70	+0.5
3,157,166	+		GFF3092	0.73	+0.0
3,157,182	+		GFF3092	0.76	-2.0
3,157,184	+		GFF3092	0.76	-1.6
3,157,184	+		GFF3092	0.76	-0.2
3,157,185	-		GFF3092	0.76	-0.3
3,157,190	-		GFF3092	0.77	+0.0
3,157,192	-		GFF3092	0.77	+2.0
3,157,192	-		GFF3092	0.77	-0.4
3,157,202	-		GFF3092	0.79	+0.9
3,157,231	-		GFF3092	0.84	+0.9
3,157,244	-		GFF3092	0.86	-0.0
3,157,244	-		GFF3092	0.86	-0.6
3,157,282	+				+0.8
3,157,282	+				+0.8
3,157,290	-				-1.7
3,157,348	-				+0.2
3,157,353	+				-0.2
3,157,353	+				-0.3
3,157,359	+				-1.5
3,157,361	-				-1.2
3,157,367	-				-1.2
3,157,372	+				-0.5
3,157,378	+		GFF3093	0.11	-0.3
3,157,378	+		GFF3093	0.11	+0.3
3,157,378	+		GFF3093	0.11	-0.3
3,157,378	+		GFF3093	0.11	+0.0
3,157,378	-		GFF3093	0.11	+0.1
3,157,386	-		GFF3093	0.12	-1.7
3,157,386	-		GFF3093	0.12	-1.1
3,157,386	-		GFF3093	0.12	-0.1
3,157,386	-		GFF3093	0.12	+0.8
3,157,386	-		GFF3093	0.12	-0.2
3,157,386	-		GFF3093	0.12	-1.5
3,157,386	-		GFF3093	0.12	-0.6
3,157,386	-		GFF3093	0.12	-1.2
3,157,386	-		GFF3093	0.12	-0.1
3,157,389	+		GFF3093	0.12	-0.2
3,157,389	+		GFF3093	0.12	-1.4
3,157,392	-		GFF3093	0.13	-0.6
3,157,396	+		GFF3093	0.13	-1.1
3,157,397	-		GFF3093	0.14	+0.1
3,157,397	-		GFF3093	0.14	-1.5
3,157,397	-		GFF3093	0.14	-0.3
3,157,397	-		GFF3093	0.14	-0.9
3,157,397	-		GFF3093	0.14	+0.4
3,157,403	+		GFF3093	0.15	-1.5
3,157,403	+		GFF3093	0.15	+0.0
3,157,403	+		GFF3093	0.15	-0.6
3,157,427	+		GFF3093	0.19	+0.7
3,157,427	+		GFF3093	0.19	-0.1
3,157,427	+		GFF3093	0.19	+0.8
3,157,430	-		GFF3093	0.19	-0.9
3,157,433	+		GFF3093	0.20	-0.6
3,157,435	-		GFF3093	0.20	+0.6
3,157,435	-		GFF3093	0.20	-1.5
3,157,435	-		GFF3093	0.20	-0.3
3,157,439	+		GFF3093	0.21	+1.3
3,157,447	-		GFF3093	0.22	-0.2
3,157,474	-		GFF3093	0.26	-0.6
3,157,480	+		GFF3093	0.27	-1.8
3,157,482	-		GFF3093	0.28	+0.5
3,157,483	-		GFF3093	0.28	-0.1
3,157,483	-		GFF3093	0.28	-0.3
3,157,483	-		GFF3093	0.28	+0.9
3,157,507	+		GFF3093	0.32	-2.2
3,157,507	+		GFF3093	0.32	-0.1
3,157,507	+		GFF3093	0.32	-1.3
3,157,515	-		GFF3093	0.33	-0.2
3,157,517	-		GFF3093	0.33	-0.3
3,157,528	+		GFF3093	0.35	+0.4
3,157,528	+		GFF3093	0.35	-0.2
3,157,528	+		GFF3093	0.35	+1.2
3,157,536	-		GFF3093	0.36	+1.1
3,157,536	-		GFF3093	0.36	-0.8
3,157,536	-		GFF3093	0.36	-1.1
3,157,536	-		GFF3093	0.36	+0.7
3,157,536	-		GFF3093	0.36	+0.1
3,157,536	-		GFF3093	0.36	-1.1
3,157,540	+		GFF3093	0.37	+0.7
3,157,546	+		GFF3093	0.38	-0.8
3,157,552	+		GFF3093	0.39	-1.6
3,157,578	+		GFF3093	0.43	-0.4
3,157,578	+		GFF3093	0.43	+0.3
3,157,588	+		GFF3093	0.45	+1.8
3,157,588	+		GFF3093	0.45	-1.0
3,157,588	+		GFF3093	0.45	-0.3
3,157,596	-		GFF3093	0.46	-2.4
3,157,596	-		GFF3093	0.46	+1.0
3,157,596	-		GFF3093	0.46	-2.5
3,157,596	-		GFF3093	0.46	-1.0
3,157,596	-		GFF3093	0.46	-0.8
3,157,607	+		GFF3093	0.48	+0.5
3,157,607	+		GFF3093	0.48	-0.4
3,157,607	+		GFF3093	0.48	-1.2
3,157,615	-		GFF3093	0.49	-1.1
3,157,621	-		GFF3093	0.50	+0.9
3,157,627	-		GFF3093	0.51	-0.2
3,157,633	+		GFF3093	0.52	-0.6
3,157,641	-		GFF3093	0.54	+0.4
3,157,647	-		GFF3093	0.55	+0.4
3,157,653	+		GFF3093	0.56	-1.9
3,157,661	-		GFF3093	0.57	-1.6
3,157,665	+		GFF3093	0.58	-1.0
3,157,671	-		GFF3093	0.59	-0.4
3,157,677	+		GFF3093	0.60	-0.6
3,157,677	+		GFF3093	0.60	-0.1
3,157,685	-		GFF3093	0.61	-0.8
3,157,685	-		GFF3093	0.61	-0.8
3,157,685	-		GFF3093	0.61	-0.6
3,157,685	-		GFF3093	0.61	-2.3
3,157,695	+		GFF3093	0.63	-0.2
3,157,708	+		GFF3093	0.65	-0.1
3,157,708	-		GFF3093	0.65	+0.3
3,157,724	-		GFF3093	0.67	-1.6
3,157,735	+		GFF3093	0.69	-0.9
3,157,740	+		GFF3093	0.70	+0.4
3,157,743	-		GFF3093	0.70	+0.6
3,157,749	-		GFF3093	0.71	-1.9
3,157,784	+		GFF3093	0.77	-0.3
3,157,805	+		GFF3093	0.81	+0.4
3,157,812	-		GFF3093	0.82	-1.1
3,157,813	-		GFF3093	0.82	-1.9
3,157,817	+		GFF3093	0.83	-0.9
3,157,822	+		GFF3093	0.83	+0.3
3,157,825	-		GFF3093	0.84	-1.4
3,157,827	+		GFF3093	0.84	-0.9
3,157,830	-		GFF3093	0.85	+1.0
3,157,837	+		GFF3093	0.86	-0.6
3,157,837	+		GFF3093	0.86	+0.8
3,157,845	-		GFF3093	0.87	-0.9
3,157,872	+				+0.4
3,157,882	+				+1.1
3,157,890	-				-0.4
3,157,891	-				+0.4
3,157,891	-				+0.4
3,157,893	+				-0.2
3,157,992	-				+0.6