Strain Fitness in Sphingobium sp. HT1-2 around GFF3068

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,138,949	-		GFF3067	0.32	+0.9
3,138,949	-		GFF3067	0.32	-0.6
3,138,951	+		GFF3067	0.32	+0.3
3,138,951	+		GFF3067	0.32	+0.3
3,138,959	-		GFF3067	0.33	+0.1
3,138,959	-		GFF3067	0.33	-0.6
3,138,959	-		GFF3067	0.33	-2.5
3,138,966	-		GFF3067	0.33	-0.1
3,138,968	+		GFF3067	0.34	+0.2
3,138,976	-		GFF3067	0.34	-1.1
3,138,998	+		GFF3067	0.36	+1.3
3,139,019	-		GFF3067	0.37	-1.3
3,139,064	-		GFF3067	0.40	-0.1
3,139,064	-		GFF3067	0.40	+0.4
3,139,081	-		GFF3067	0.41	-0.2
3,139,081	-		GFF3067	0.41	-0.5
3,139,120	+		GFF3067	0.44	+0.2
3,139,123	-		GFF3067	0.44	-0.1
3,139,128	-		GFF3067	0.44	-1.4
3,139,128	-		GFF3067	0.44	+0.8
3,139,135	+		GFF3067	0.45	-2.0
3,139,143	-		GFF3067	0.46	+0.0
3,139,152	+		GFF3067	0.46	-0.0
3,139,152	+		GFF3067	0.46	-2.5
3,139,154	+		GFF3067	0.46	-1.2
3,139,156	-		GFF3067	0.46	-0.5
3,139,162	-		GFF3067	0.47	+1.3
3,139,162	-		GFF3067	0.47	-0.2
3,139,175	-		GFF3067	0.48	+1.3
3,139,218	-		GFF3067	0.51	+0.6
3,139,220	+		GFF3067	0.51	+0.2
3,139,268	-		GFF3067	0.54	+0.5
3,139,271	-		GFF3067	0.54	-1.7
3,139,290	+		GFF3067	0.56	+0.9
3,139,294	-		GFF3067	0.56	+1.7
3,139,341	+		GFF3067	0.59	-1.3
3,139,346	+		GFF3067	0.59	+0.1
3,139,403	-		GFF3067	0.63	-0.2
3,139,408	-		GFF3067	0.64	-1.1
3,139,413	-		GFF3067	0.64	+0.5
3,139,432	+		GFF3067	0.65	+0.2
3,139,432	-		GFF3067	0.65	-0.4
3,139,451	-		GFF3067	0.67	-0.8
3,139,461	-		GFF3067	0.67	+0.5
3,139,461	-		GFF3067	0.67	-0.2
3,139,461	-		GFF3067	0.67	+0.9
3,139,461	-		GFF3067	0.67	+0.5
3,139,462	+		GFF3067	0.67	+1.0
3,139,467	+		GFF3067	0.68	-0.3
3,139,467	+		GFF3067	0.68	-2.0
3,139,476	-		GFF3067	0.68	+1.0
3,139,485	-		GFF3067	0.69	-0.8
3,139,489	+		GFF3067	0.69	-0.4
3,139,497	-		GFF3067	0.70	+1.4
3,139,497	-		GFF3067	0.70	-0.3
3,139,522	+		GFF3067	0.71	-0.5
3,139,522	+		GFF3067	0.71	-1.7
3,139,530	-		GFF3067	0.72	-0.2
3,139,530	-		GFF3067	0.72	-0.4
3,139,530	-		GFF3067	0.72	+0.8
3,139,542	-		GFF3067	0.73	+0.3
3,139,560	+		GFF3067	0.74	-0.4
3,139,589	+		GFF3067	0.76	+0.5
3,139,616	+		GFF3067	0.78	-0.2
3,139,624	-		GFF3067	0.78	+0.5
3,139,639	+		GFF3067	0.79	-2.0
3,139,647	-		GFF3067	0.80	+0.3
3,139,676	+		GFF3067	0.82	-0.7
3,139,694	+		GFF3067	0.83	+0.4
3,139,694	+		GFF3067	0.83	-2.0
3,139,702	-		GFF3067	0.84	+0.5
3,139,702	-		GFF3067	0.84	+0.4
3,139,708	+		GFF3067	0.84	-0.2
3,139,721	+		GFF3067	0.85	+0.4
3,139,721	+		GFF3067	0.85	-0.3
3,139,721	+		GFF3067	0.85	+0.5
3,139,721	+		GFF3067	0.85	-1.3
3,139,721	+		GFF3067	0.85	+0.8
3,139,721	+		GFF3067	0.85	+0.3
3,139,721	-		GFF3067	0.85	-2.6
3,139,725	+		GFF3067	0.85	+0.4
3,139,730	+		GFF3067	0.86	+0.8
3,139,749	-		GFF3067	0.87	-2.1
3,139,750	-		GFF3067	0.87	+0.1
3,139,767	+		GFF3067	0.88	+1.2
3,139,785	+		GFF3067	0.89	-2.6
3,139,785	+		GFF3067	0.89	-1.3
3,139,785	+		GFF3067	0.89	-0.1
3,139,785	+		GFF3067	0.89	+0.3
3,139,785	+		GFF3067	0.89	-0.4
3,139,785	+		GFF3067	0.89	+0.4
3,139,790	-		GFF3067	0.90	-1.0
3,139,793	-				-2.0
3,139,795	+				-1.1
3,139,803	-				-0.4
3,139,804	-				+0.0
3,139,837	+				+0.7
3,139,837	+				+0.1
3,139,837	+				+0.6
3,139,845	-				+1.3
3,139,845	-				-0.4
3,139,845	-				-0.2
3,139,855	-				-0.9
3,139,869	-				+0.3
3,139,927	+				+1.2
3,139,927	+				-0.5
3,139,927	+				-2.4
3,139,927	+				+0.3
3,139,927	+				-0.2
3,139,927	+				-0.7
3,139,927	+				-0.4
3,139,927	+				+0.8
3,139,927	+				+0.1
3,139,932	+				-0.1
3,139,935	-				-1.1
3,139,935	-				-0.2
3,139,935	-				-0.0
3,139,935	-				+1.4
3,139,935	-				-0.8
3,139,935	-				-0.3
3,139,940	-				-1.1
3,139,940	-				-0.7
3,139,940	-				-1.2
3,139,951	+				-0.4
3,139,961	+				-0.1
3,139,961	+				+0.5
3,139,962	+				+1.8
3,139,962	+				-0.9
3,139,962	+				-0.8
3,139,962	+				+0.1
3,139,969	-				-1.1
3,139,969	-				+1.5
3,139,970	-				-1.9
3,139,972	+				-0.3
3,139,972	+				-2.2
3,139,977	+		GFF3068	0.10	+0.3
3,139,980	-		GFF3068	0.11	-0.6
3,139,982	+		GFF3068	0.12	+0.2
3,139,982	+		GFF3068	0.12	-0.3
3,139,982	+		GFF3068	0.12	-0.5
3,140,083	+		GFF3068	0.43	-2.3
3,140,102	-		GFF3068	0.49	+0.7
3,140,122	+		GFF3068	0.55	-2.4
3,140,136	-		GFF3068	0.60	+1.7
3,140,176	+		GFF3068	0.72	-0.1
3,140,178	+		GFF3068	0.73	-0.9
3,140,189	+		GFF3068	0.76	-1.1
3,140,189	+		GFF3068	0.76	-1.8
3,140,197	+		GFF3068	0.79	-1.4
3,140,197	+		GFF3068	0.79	+1.8
3,140,197	+		GFF3068	0.79	-1.5
3,140,205	-		GFF3068	0.81	+0.1
3,140,205	-		GFF3068	0.81	+0.4
3,140,225	+		GFF3068	0.88	+0.4
3,140,233	-				+0.4
3,140,247	+				-0.9
3,140,287	-				-0.1
3,140,287	-				-1.0
3,140,353	+				+0.5
3,140,381	+				-1.3
3,140,389	-		GFF3069	0.11	-0.8
3,140,389	-		GFF3069	0.11	-1.6
3,140,389	-		GFF3069	0.11	+0.7
3,140,390	+		GFF3069	0.11	-1.4
3,140,434	-		GFF3069	0.17	+0.4
3,140,474	+		GFF3069	0.23	-0.2
3,140,475	+		GFF3069	0.23	-2.8
3,140,483	-		GFF3069	0.24	-0.1
3,140,483	-		GFF3069	0.24	+0.1
3,140,499	+		GFF3069	0.27	-1.4
3,140,499	+		GFF3069	0.27	-0.3
3,140,499	+		GFF3069	0.27	-0.5
3,140,499	+		GFF3069	0.27	+0.5
3,140,499	+		GFF3069	0.27	-0.3
3,140,499	+		GFF3069	0.27	-0.1
3,140,499	+		GFF3069	0.27	-2.0
3,140,507	-		GFF3069	0.28	+0.4
3,140,507	-		GFF3069	0.28	-1.9
3,140,507	-		GFF3069	0.28	-1.0
3,140,507	-		GFF3069	0.28	+0.9
3,140,507	-		GFF3069	0.28	+0.3
3,140,507	-		GFF3069	0.28	+0.7
3,140,507	-		GFF3069	0.28	-2.0
3,140,507	-		GFF3069	0.28	+0.3
3,140,510	+		GFF3069	0.28	+0.6
3,140,516	+		GFF3069	0.29	-0.0
3,140,531	+		GFF3069	0.31	-0.4
3,140,531	+		GFF3069	0.31	-1.4
3,140,531	+		GFF3069	0.31	-1.2
3,140,531	+		GFF3069	0.31	-2.4
3,140,531	+		GFF3069	0.31	+0.8
3,140,531	+		GFF3069	0.31	+0.9
3,140,531	+		GFF3069	0.31	-0.3
3,140,531	+		GFF3069	0.31	+0.3
3,140,531	+		GFF3069	0.31	-0.6
3,140,531	+		GFF3069	0.31	+1.0
3,140,531	+		GFF3069	0.31	+0.8
3,140,531	+		GFF3069	0.31	+0.1
3,140,531	+		GFF3069	0.31	+0.3
3,140,531	+		GFF3069	0.31	-1.2
3,140,539	-		GFF3069	0.32	-0.3
3,140,539	-		GFF3069	0.32	-2.0
3,140,539	-		GFF3069	0.32	-0.2
3,140,539	-		GFF3069	0.32	+1.0
3,140,539	-		GFF3069	0.32	-0.4
3,140,539	-		GFF3069	0.32	-1.7
3,140,539	-		GFF3069	0.32	+0.1
3,140,539	-		GFF3069	0.32	-2.0
3,140,539	-		GFF3069	0.32	+0.9
3,140,539	-		GFF3069	0.32	+0.7
3,140,565	+		GFF3069	0.36	+0.7
3,140,613	-		GFF3069	0.43	+0.0
3,140,617	+		GFF3069	0.44	-1.7
3,140,630	+		GFF3069	0.46	-1.6
3,140,630	+		GFF3069	0.46	-2.0
3,140,630	-		GFF3069	0.46	+0.6
3,140,630	-		GFF3069	0.46	-0.4
3,140,633	+		GFF3069	0.46	-1.0
3,140,638	-		GFF3069	0.47	-0.0
3,140,638	-		GFF3069	0.47	+0.9
3,140,641	-		GFF3069	0.47	+0.3
3,140,654	+		GFF3069	0.49	-2.2
3,140,654	+		GFF3069	0.49	+0.1
3,140,659	+		GFF3069	0.50	+1.0
3,140,662	-		GFF3069	0.50	+0.7
3,140,662	-		GFF3069	0.50	+0.3
3,140,662	-		GFF3069	0.50	-1.5
3,140,680	+		GFF3069	0.53	+0.6
3,140,680	+		GFF3069	0.53	+0.8
3,140,736	+		GFF3069	0.61	-0.1
3,140,742	+		GFF3069	0.62	-1.6
3,140,763	-		GFF3069	0.65	-1.2
3,140,787	+		GFF3069	0.69	-1.9
3,140,789	-		GFF3069	0.69	-1.2
3,140,799	+		GFF3069	0.70	-0.0
3,140,802	+		GFF3069	0.71	-0.0
3,140,809	+		GFF3069	0.72	-0.4
3,140,824	+		GFF3069	0.74	-0.0
3,140,846	+		GFF3069	0.77	-1.6
3,140,854	-		GFF3069	0.79	-0.7
3,140,861	+		GFF3069	0.80	-0.4
3,140,874	+		GFF3069	0.81	+1.6
3,140,874	+		GFF3069	0.81	-1.4
3,140,882	-		GFF3069	0.83	-0.8
3,140,898	-		GFF3069	0.85	-0.1
3,140,908	-		GFF3069	0.86	-0.7
3,140,908	-		GFF3069	0.86	-1.5
3,140,915	+		GFF3069	0.87	-0.7
3,140,931	+		GFF3069	0.90	+0.2
3,140,931	-		GFF3069	0.90	-0.4
3,140,937	+				+0.7
3,140,939	-				+0.2
3,140,940	-				-0.0
3,140,943	+				+0.2
3,140,945	-				+0.8
3,140,961	+				-0.7
3,140,962	+				+0.6
3,140,962	+				+0.4
3,140,966	+				-1.9
3,140,969	-				+1.7
3,140,974	-				-0.7
3,140,983	-				-0.0
3,140,989	+				-1.6
3,140,989	+				-0.7
3,140,989	+				-1.2
3,140,989	+				+0.2
3,140,989	+				-2.5
3,140,989	+				-0.8
3,140,996	-				+0.7
3,140,997	-				-0.8
3,140,997	-				-1.3
3,140,997	-				-0.3
3,141,009	+				-0.4
3,141,009	+				-0.4
3,141,024	-				-0.7
3,141,024	-				-0.8
3,141,027	+				+0.5
3,141,027	+				+0.1
3,141,051	+				-0.2
3,141,052	+				+0.9
3,141,082	+				-0.8
3,141,082	+				-2.2
3,141,100	+				+0.4
3,141,101	-				+0.4
3,141,116	+				+0.1
3,141,173	+		GFF3070	0.18	-2.8
3,141,173	+		GFF3070	0.18	-1.0
3,141,176	-		GFF3070	0.18	-0.9
3,141,178	+		GFF3070	0.18	+0.1
3,141,181	-		GFF3070	0.19	-0.4
3,141,183	+		GFF3070	0.19	-1.5
3,141,191	-		GFF3070	0.20	-2.7
3,141,195	+		GFF3070	0.21	+1.2
3,141,254	+		GFF3070	0.29	-0.3
3,141,255	+		GFF3070	0.29	+0.4