Strain Fitness in Sphingobium sp. HT1-2 around GFF3047

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,122,631	-				+0.5
3,122,638	+				-0.4
3,122,688	+				-0.2
3,122,696	-				+0.5
3,122,696	-				-1.6
3,122,705	+				+1.3
3,122,710	+				-1.3
3,122,718	-				-0.7
3,122,739	-				+0.9
3,122,749	+				-0.7
3,122,752	+				-0.6
3,122,765	-				-2.0
3,122,771	+				+1.2
3,122,782	+				-0.7
3,122,782	+				-0.0
3,122,787	+				+0.2
3,122,817	+				-0.6
3,122,833	+				-2.9
3,122,836	-				+0.9
3,122,836	-				-0.6
3,122,855	+		GFF3046	0.11	-1.3
3,122,872	-		GFF3046	0.13	-1.3
3,122,885	+		GFF3046	0.14	+0.4
3,122,894	-		GFF3046	0.16	-0.5
3,122,895	+		GFF3046	0.16	-0.7
3,122,908	-		GFF3046	0.17	-1.2
3,122,908	-		GFF3046	0.17	-0.3
3,122,921	+		GFF3046	0.19	-1.4
3,122,980	+		GFF3046	0.26	+0.1
3,122,981	+		GFF3046	0.26	-0.8
3,122,981	+		GFF3046	0.26	+0.4
3,122,981	+		GFF3046	0.26	-0.6
3,122,981	+		GFF3046	0.26	-1.1
3,122,989	-		GFF3046	0.27	-1.1
3,122,989	-		GFF3046	0.27	+1.7
3,122,989	-		GFF3046	0.27	-2.4
3,122,989	-		GFF3046	0.27	+0.4
3,122,989	-		GFF3046	0.27	+0.1
3,122,989	-		GFF3046	0.27	-0.6
3,122,989	-		GFF3046	0.27	+0.1
3,123,006	+		GFF3046	0.29	-0.5
3,123,013	+		GFF3046	0.30	+1.1
3,123,013	+		GFF3046	0.30	-1.5
3,123,013	+		GFF3046	0.30	-1.0
3,123,013	+		GFF3046	0.30	+0.4
3,123,013	+		GFF3046	0.30	-0.2
3,123,013	+		GFF3046	0.30	-0.6
3,123,021	-		GFF3046	0.31	-1.2
3,123,021	-		GFF3046	0.31	-2.1
3,123,031	-		GFF3046	0.32	-2.7
3,123,031	-		GFF3046	0.32	+0.1
3,123,046	+		GFF3046	0.34	-0.4
3,123,046	+		GFF3046	0.34	+1.4
3,123,046	+		GFF3046	0.34	-1.1
3,123,046	+		GFF3046	0.34	-1.8
3,123,053	-		GFF3046	0.35	+0.5
3,123,054	-		GFF3046	0.35	+0.2
3,123,054	-		GFF3046	0.35	+0.4
3,123,054	-		GFF3046	0.35	-2.3
3,123,057	+		GFF3046	0.36	-0.3
3,123,057	+		GFF3046	0.36	-1.2
3,123,065	-		GFF3046	0.37	-1.2
3,123,078	-		GFF3046	0.38	-0.7
3,123,092	+		GFF3046	0.40	-0.5
3,123,100	-		GFF3046	0.41	+1.5
3,123,130	-		GFF3046	0.44	-1.0
3,123,143	+		GFF3046	0.46	-1.6
3,123,164	+		GFF3046	0.49	-1.4
3,123,183	-		GFF3046	0.51	+0.3
3,123,183	-		GFF3046	0.51	-0.5
3,123,196	+		GFF3046	0.53	-2.0
3,123,202	+		GFF3046	0.53	-1.4
3,123,202	+		GFF3046	0.53	-0.7
3,123,204	-		GFF3046	0.54	-0.4
3,123,204	-		GFF3046	0.54	+1.6
3,123,204	-		GFF3046	0.54	+0.7
3,123,220	-		GFF3046	0.56	-0.1
3,123,225	-		GFF3046	0.56	-0.4
3,123,237	+		GFF3046	0.58	-0.4
3,123,275	+		GFF3046	0.62	-1.6
3,123,276	+		GFF3046	0.62	+0.4
3,123,293	-		GFF3046	0.64	+0.5
3,123,299	+		GFF3046	0.65	+0.5
3,123,307	+		GFF3046	0.66	-0.1
3,123,317	+		GFF3046	0.67	-1.0
3,123,330	+		GFF3046	0.69	-1.8
3,123,361	+		GFF3046	0.73	-1.1
3,123,364	+		GFF3046	0.73	-0.3
3,123,384	-		GFF3046	0.76	-2.3
3,123,403	-		GFF3046	0.78	-2.1
3,123,436	+		GFF3046	0.82	-0.0
3,123,441	+		GFF3046	0.83	+0.2
3,123,441	+		GFF3046	0.83	-1.0
3,123,441	+		GFF3046	0.83	-0.5
3,123,449	-		GFF3046	0.84	+0.5
3,123,449	-		GFF3046	0.84	+1.1
3,123,449	-		GFF3046	0.84	+0.7
3,123,460	-		GFF3046	0.85	-0.4
3,123,473	+		GFF3046	0.87	+0.7
3,123,506	-				-1.0
3,123,536	+				+1.2
3,123,536	+				+1.9
3,123,544	-				+0.7
3,123,544	-				-0.1
3,123,549	-				+0.1
3,123,559	+				+0.4
3,123,581	+				-1.3
3,123,581	+				-0.6
3,123,581	+				+0.4
3,123,589	-				-1.9
3,123,589	-				+0.0
3,123,637	-				-1.2
3,123,643	+				+1.0
3,123,651	-				-0.7
3,123,651	-				+1.4
3,123,667	-				+0.4
3,123,667	-				-1.2
3,123,671	+				+0.3
3,123,686	-				-1.2
3,123,715	+				-1.4
3,123,774	+		GFF3047	0.15	-0.2
3,123,782	-		GFF3047	0.16	-1.4
3,123,805	-		GFF3047	0.18	+0.5
3,123,829	+		GFF3047	0.20	-1.0
3,123,920	-		GFF3047	0.28	+0.4
3,123,920	-		GFF3047	0.28	-2.8
3,123,931	+		GFF3047	0.29	-0.2
3,123,948	+		GFF3047	0.30	+0.1
3,123,948	+		GFF3047	0.30	-0.4
3,123,948	+		GFF3047	0.30	-0.2
3,123,948	+		GFF3047	0.30	-0.4
3,123,948	+		GFF3047	0.30	+0.5
3,123,948	+		GFF3047	0.30	-2.1
3,123,956	-		GFF3047	0.31	-0.2
3,123,956	-		GFF3047	0.31	+0.7
3,123,956	-		GFF3047	0.31	+0.3
3,123,956	-		GFF3047	0.31	-1.9
3,123,956	-		GFF3047	0.31	-1.6
3,123,957	-		GFF3047	0.31	-0.4
3,123,966	+		GFF3047	0.32	-1.0
3,124,004	+		GFF3047	0.35	-0.8
3,124,004	+		GFF3047	0.35	-0.1
3,124,041	+		GFF3047	0.38	+0.8
3,124,041	+		GFF3047	0.38	+0.5
3,124,041	+		GFF3047	0.38	-0.3
3,124,049	-		GFF3047	0.39	-1.1
3,124,054	-		GFF3047	0.39	-1.7
3,124,082	+		GFF3047	0.42	-0.9
3,124,084	+		GFF3047	0.42	+0.3
3,124,157	+		GFF3047	0.48	+0.1
3,124,165	+		GFF3047	0.49	-2.1
3,124,165	+		GFF3047	0.49	-0.6
3,124,165	-		GFF3047	0.49	-0.2
3,124,180	+		GFF3047	0.50	-1.3
3,124,193	-		GFF3047	0.51	-1.6
3,124,236	+		GFF3047	0.55	-1.3
3,124,236	+		GFF3047	0.55	+0.5
3,124,236	+		GFF3047	0.55	-0.1
3,124,236	+		GFF3047	0.55	-1.1
3,124,236	+		GFF3047	0.55	+0.1
3,124,236	+		GFF3047	0.55	-1.6
3,124,244	-		GFF3047	0.56	+0.4
3,124,244	-		GFF3047	0.56	-0.0
3,124,244	-		GFF3047	0.56	+0.3
3,124,313	+		GFF3047	0.62	+0.9
3,124,316	+		GFF3047	0.62	+0.6
3,124,332	-		GFF3047	0.64	+0.3
3,124,365	+		GFF3047	0.66	-0.6
3,124,443	-		GFF3047	0.73	-0.8
3,124,489	+		GFF3047	0.77	-1.7
3,124,506	+		GFF3047	0.79	-1.8
3,124,526	+		GFF3047	0.81	-0.2
3,124,541	+		GFF3047	0.82	-1.5
3,124,543	-		GFF3047	0.82	-1.8
3,124,553	+		GFF3047	0.83	-1.1
3,124,558	+		GFF3047	0.83	-1.7
3,124,586	+		GFF3047	0.86	+0.6
3,124,594	-		GFF3047	0.86	-1.4
3,124,618	+		GFF3047	0.89	-0.1
3,124,623	+		GFF3047	0.89	-2.1
3,124,629	+		GFF3047	0.90	+0.0
3,124,631	-		GFF3047	0.90	-1.6
3,124,668	+				+0.9
3,124,673	+				-0.3
3,124,673	+				+1.1
3,124,673	+				-0.3
3,124,673	+				+0.9
3,124,676	-				-1.5
3,124,681	-				-1.0
3,124,681	-				+1.4
3,124,681	-				-2.0
3,124,681	-				-1.3
3,124,681	-				+1.0
3,124,686	+				-1.8
3,124,687	-				+1.0
3,124,695	-				+0.8
3,124,707	+				-0.5
3,124,742	+				-1.3
3,124,743	+				-1.0
3,124,747	-				+1.1
3,124,751	-				-0.2
3,124,807	-		GFF3048	0.10	-0.7
3,124,812	+		GFF3048	0.11	+0.3
3,124,816	-		GFF3048	0.11	-1.1
3,124,820	+		GFF3048	0.12	+0.4
3,124,828	-		GFF3048	0.13	+1.3
3,124,849	-		GFF3048	0.17	+0.9
3,124,849	-		GFF3048	0.17	-0.4
3,124,879	+		GFF3048	0.22	-1.9
3,124,969	+		GFF3048	0.36	-1.2
3,124,998	-		GFF3048	0.41	-1.5
3,125,081	+		GFF3048	0.54	-1.2
3,125,089	-		GFF3048	0.56	-0.6
3,125,116	+		GFF3048	0.60	-0.2
3,125,116	+		GFF3048	0.60	+0.4
3,125,116	+		GFF3048	0.60	-2.1
3,125,121	+		GFF3048	0.61	-0.4
3,125,132	+		GFF3048	0.63	-2.3
3,125,134	-		GFF3048	0.63	-0.1
3,125,146	+		GFF3048	0.65	-1.1
3,125,146	+		GFF3048	0.65	+1.4
3,125,206	-		GFF3048	0.75	+0.3
3,125,206	-		GFF3048	0.75	+0.9
3,125,208	-		GFF3048	0.75	-0.6
3,125,212	+		GFF3048	0.76	+0.4
3,125,241	+		GFF3048	0.80	-0.2
3,125,241	+		GFF3048	0.80	-0.2
3,125,241	+		GFF3048	0.80	-1.1
3,125,241	+		GFF3048	0.80	-0.5
3,125,241	+		GFF3048	0.80	+1.6
3,125,241	+		GFF3048	0.80	-2.0
3,125,249	-		GFF3048	0.82	-2.2
3,125,249	-		GFF3048	0.82	-0.6
3,125,249	-		GFF3048	0.82	+0.3
3,125,249	-		GFF3048	0.82	-2.5
3,125,253	+		GFF3048	0.82	+0.9
3,125,253	+		GFF3048	0.82	-1.3
3,125,261	-		GFF3048	0.83	-1.7
3,125,261	-		GFF3048	0.83	-0.0
3,125,276	-		GFF3048	0.86	-1.0
3,125,309	+				-1.4
3,125,309	+				-2.0
3,125,316	-				-0.1
3,125,316	-				-1.5
3,125,317	-				-0.4
3,125,317	-				-1.6
3,125,320	+				-1.3
3,125,341	+				-1.4
3,125,349	-				-1.5
3,125,352	+				+0.5
3,125,352	+				-1.7
3,125,352	+				-0.6
3,125,352	+				-1.0
3,125,352	+				-1.7
3,125,365	-				+0.8
3,125,371	+				+1.0
3,125,376	+				+0.1
3,125,457	-				-1.7
3,125,459	+				-1.3
3,125,476	+				-0.0
3,125,491	-				-1.6
3,125,512	+		GFF3049	0.11	-0.3
3,125,520	+		GFF3049	0.12	-1.6
3,125,528	-		GFF3049	0.13	-0.4
3,125,533	-		GFF3049	0.14	-0.3
3,125,553	+		GFF3049	0.17	-1.8
3,125,556	+		GFF3049	0.17	+0.6
3,125,557	-		GFF3049	0.17	-0.2
3,125,591	+		GFF3049	0.22	+0.3
3,125,610	-		GFF3049	0.24	-1.3
3,125,655	-		GFF3049	0.30	+0.4
3,125,728	-		GFF3049	0.40	-0.2
3,125,736	-		GFF3049	0.41	+1.0