Strain Fitness in Sphingobium sp. HT1-2 around GFF3029

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,102,614	-		GFF3028	0.35	-0.2
3,102,693	+		GFF3028	0.40	+0.2
3,102,699	-		GFF3028	0.41	+0.8
3,102,729	+		GFF3028	0.43	-0.7
3,102,735	-		GFF3028	0.43	-1.4
3,102,737	-		GFF3028	0.43	+0.7
3,102,737	-		GFF3028	0.43	-0.2
3,102,737	-		GFF3028	0.43	-0.4
3,102,745	-		GFF3028	0.44	-2.3
3,102,747	-		GFF3028	0.44	-0.2
3,102,755	+		GFF3028	0.45	-0.4
3,102,772	+		GFF3028	0.46	-0.4
3,102,772	+		GFF3028	0.46	-1.2
3,102,777	+		GFF3028	0.46	-0.2
3,102,777	+		GFF3028	0.46	-0.2
3,102,777	+		GFF3028	0.46	+0.1
3,102,777	+		GFF3028	0.46	+0.2
3,102,777	+		GFF3028	0.46	+1.7
3,102,793	+		GFF3028	0.47	+0.3
3,102,926	+		GFF3028	0.56	-0.7
3,102,931	+		GFF3028	0.56	+1.3
3,102,931	+		GFF3028	0.56	+1.2
3,102,931	+		GFF3028	0.56	+1.8
3,102,939	-		GFF3028	0.57	+0.4
3,102,958	+		GFF3028	0.58	-0.9
3,102,983	+		GFF3028	0.60	+1.7
3,102,993	+		GFF3028	0.60	+1.8
3,102,993	+		GFF3028	0.60	-0.3
3,102,993	+		GFF3028	0.60	-2.2
3,102,993	+		GFF3028	0.60	-1.3
3,102,993	+		GFF3028	0.60	-1.3
3,103,001	-		GFF3028	0.61	+1.6
3,103,001	-		GFF3028	0.61	-0.8
3,103,001	-		GFF3028	0.61	-0.3
3,103,023	-		GFF3028	0.62	-0.8
3,103,060	-		GFF3028	0.65	-0.7
3,103,072	+		GFF3028	0.66	+0.9
3,103,080	-		GFF3028	0.66	-0.1
3,103,111	+		GFF3028	0.68	+0.3
3,103,111	+		GFF3028	0.68	-1.0
3,103,111	+		GFF3028	0.68	-1.3
3,103,111	+		GFF3028	0.68	-1.9
3,103,113	+		GFF3028	0.68	-0.2
3,103,116	-		GFF3028	0.69	+0.1
3,103,119	-		GFF3028	0.69	+1.1
3,103,137	+		GFF3028	0.70	-1.3
3,103,137	+		GFF3028	0.70	+0.2
3,103,137	+		GFF3028	0.70	+1.0
3,103,137	+		GFF3028	0.70	+1.0
3,103,137	+		GFF3028	0.70	-1.0
3,103,137	+		GFF3028	0.70	-0.1
3,103,137	+		GFF3028	0.70	-0.1
3,103,137	+		GFF3028	0.70	-1.0
3,103,137	+		GFF3028	0.70	+1.2
3,103,137	+		GFF3028	0.70	+1.8
3,103,137	+		GFF3028	0.70	-0.7
3,103,145	-		GFF3028	0.71	-1.2
3,103,145	-		GFF3028	0.71	-0.7
3,103,145	-		GFF3028	0.71	-0.1
3,103,145	-		GFF3028	0.71	-1.0
3,103,145	-		GFF3028	0.71	+1.1
3,103,145	-		GFF3028	0.71	-0.5
3,103,145	-		GFF3028	0.71	-1.3
3,103,145	-		GFF3028	0.71	+0.4
3,103,147	+		GFF3028	0.71	+1.2
3,103,155	-		GFF3028	0.71	+0.4
3,103,162	-		GFF3028	0.72	-0.3
3,103,163	-		GFF3028	0.72	-0.5
3,103,167	-		GFF3028	0.72	-0.1
3,103,178	+		GFF3028	0.73	+2.1
3,103,185	-		GFF3028	0.73	-0.1
3,103,198	+		GFF3028	0.74	-1.0
3,103,211	-		GFF3028	0.75	-0.5
3,103,261	-		GFF3028	0.78	-0.1
3,103,278	+		GFF3028	0.79	-0.2
3,103,278	+		GFF3028	0.79	-2.6
3,103,278	+		GFF3028	0.79	+0.2
3,103,285	+		GFF3028	0.80	+0.0
3,103,286	-		GFF3028	0.80	+1.0
3,103,286	-		GFF3028	0.80	+1.3
3,103,344	+		GFF3028	0.84	-0.5
3,103,349	+		GFF3028	0.84	-0.2
3,103,349	+		GFF3028	0.84	-0.1
3,103,367	-		GFF3028	0.85	-0.5
3,103,369	+		GFF3028	0.85	-1.4
3,103,391	+		GFF3028	0.87	-0.7
3,103,399	-		GFF3028	0.87	-0.1
3,103,399	-		GFF3028	0.87	-2.0
3,103,407	-		GFF3028	0.88	+0.5
3,103,424	-		GFF3028	0.89	-1.3
3,103,433	+		GFF3028	0.90	-2.4
3,103,434	+		GFF3028	0.90	-1.3
3,103,441	-				+0.2
3,103,450	+				-1.0
3,103,450	+				+0.4
3,103,450	+				-1.2
3,103,458	-				+0.7
3,103,458	-				+0.1
3,103,506	+				-1.2
3,103,506	+				+1.2
3,103,566	+				-2.0
3,103,574	-				-0.1
3,103,579	-				+0.8
3,103,587	+				-0.0
3,103,600	+				+0.1
3,103,600	+				-1.2
3,103,600	+				-0.1
3,103,600	+				-0.5
3,103,603	-				+0.8
3,103,608	-				+0.8
3,103,608	-				+0.3
3,103,608	-				-1.2
3,103,608	-				-2.6
3,103,608	-				-0.7
3,103,608	-				-0.9
3,103,608	-				+0.4
3,103,612	+				+0.2
3,103,618	+				-0.5
3,103,628	-				+1.5
3,103,630	-				-1.1
3,103,643	-				+0.2
3,103,649	-				-0.2
3,103,675	-				-0.8
3,103,702	+				+0.4
3,103,705	-				+0.6
3,103,705	-				+0.1
3,103,710	-				-0.9
3,103,712	+				+1.9
3,103,713	+				-0.6
3,103,713	+				+1.3
3,103,720	-				+0.7
3,103,721	-				-0.3
3,103,779	-				+1.3
3,103,892	-		GFF3029	0.15	-0.1
3,103,898	+		GFF3029	0.15	+1.6
3,103,907	-		GFF3029	0.16	-0.0
3,103,962	+		GFF3029	0.18	+1.2
3,103,962	+		GFF3029	0.18	-0.4
3,103,965	-		GFF3029	0.18	-0.5
3,103,975	-		GFF3029	0.19	-2.1
3,103,975	-		GFF3029	0.19	+0.4
3,103,980	-		GFF3029	0.19	+0.9
3,103,980	-		GFF3029	0.19	-0.5
3,103,984	+		GFF3029	0.19	+0.5
3,103,989	-		GFF3029	0.20	-1.2
3,104,016	-		GFF3029	0.21	+0.5
3,104,034	-		GFF3029	0.22	-1.5
3,104,046	-		GFF3029	0.22	+1.8
3,104,052	+		GFF3029	0.23	-0.8
3,104,052	+		GFF3029	0.23	-0.3
3,104,057	+		GFF3029	0.23	-0.7
3,104,057	+		GFF3029	0.23	+1.0
3,104,060	-		GFF3029	0.23	-1.8
3,104,065	-		GFF3029	0.23	+0.5
3,104,085	-		GFF3029	0.24	+1.0
3,104,085	-		GFF3029	0.24	-0.3
3,104,085	-		GFF3029	0.24	-0.6
3,104,103	+		GFF3029	0.25	-1.8
3,104,116	+		GFF3029	0.26	+0.8
3,104,139	-		GFF3029	0.27	-1.4
3,104,139	-		GFF3029	0.27	-0.2
3,104,205	+		GFF3029	0.30	+0.4
3,104,205	+		GFF3029	0.30	+0.3
3,104,205	+		GFF3029	0.30	+1.2
3,104,205	+		GFF3029	0.30	+1.3
3,104,213	-		GFF3029	0.30	-0.4
3,104,271	+		GFF3029	0.33	-0.3
3,104,286	+		GFF3029	0.34	+0.6
3,104,286	+		GFF3029	0.34	-0.2
3,104,304	-		GFF3029	0.35	-0.1
3,104,322	+		GFF3029	0.36	+1.1
3,104,344	+		GFF3029	0.37	-0.1
3,104,352	-		GFF3029	0.37	+0.0
3,104,352	-		GFF3029	0.37	+0.3
3,104,354	+		GFF3029	0.37	+0.9
3,104,393	-		GFF3029	0.39	+0.4
3,104,407	+		GFF3029	0.40	-0.1
3,104,417	+		GFF3029	0.40	-0.2
3,104,453	-		GFF3029	0.42	-1.3
3,104,463	-		GFF3029	0.43	+1.0
3,104,469	+		GFF3029	0.43	-1.3
3,104,469	+		GFF3029	0.43	+0.4
3,104,477	-		GFF3029	0.43	+1.0
3,104,556	-		GFF3029	0.47	+0.9
3,104,559	-		GFF3029	0.47	-0.2
3,104,559	-		GFF3029	0.47	-0.1
3,104,568	+		GFF3029	0.48	-0.6
3,104,576	-		GFF3029	0.48	-0.6
3,104,576	-		GFF3029	0.48	-1.7
3,104,578	+		GFF3029	0.48	-1.2
3,104,595	+		GFF3029	0.49	-0.4
3,104,607	-		GFF3029	0.50	+0.6
3,104,652	+		GFF3029	0.52	+1.0
3,104,695	+		GFF3029	0.54	+0.1
3,104,786	+		GFF3029	0.59	-0.2
3,104,794	-		GFF3029	0.59	-0.7
3,104,826	+		GFF3029	0.60	-1.5
3,104,826	+		GFF3029	0.60	-0.4
3,104,831	+		GFF3029	0.61	-1.1
3,104,834	-		GFF3029	0.61	-1.6
3,104,868	-		GFF3029	0.63	-0.1
3,104,905	+		GFF3029	0.64	+0.9
3,104,918	+		GFF3029	0.65	-0.8
3,104,936	+		GFF3029	0.66	-0.3
3,104,936	+		GFF3029	0.66	+0.1
3,104,939	-		GFF3029	0.66	-1.0
3,104,944	-		GFF3029	0.66	+0.3
3,104,946	+		GFF3029	0.66	-2.2
3,104,984	+		GFF3029	0.68	-1.1
3,104,992	-		GFF3029	0.69	+0.1
3,104,993	-		GFF3029	0.69	+0.0
3,104,997	+		GFF3029	0.69	-0.7
3,105,009	-		GFF3029	0.69	-0.9
3,105,056	+		GFF3029	0.72	+1.8
3,105,064	-		GFF3029	0.72	+0.1
3,105,066	+		GFF3029	0.72	-0.5
3,105,069	-		GFF3029	0.72	-1.8
3,105,074	-		GFF3029	0.73	+0.8
3,105,079	-		GFF3029	0.73	-0.3
3,105,154	-		GFF3029	0.76	-0.1
3,105,170	-		GFF3029	0.77	-0.2
3,105,179	-		GFF3029	0.78	+1.0
3,105,225	+		GFF3029	0.80	-1.3
3,105,225	+		GFF3029	0.80	+0.5
3,105,233	-		GFF3029	0.80	-0.2
3,105,256	+		GFF3029	0.81	-0.2
3,105,275	-		GFF3029	0.82	+1.0
3,105,279	-		GFF3029	0.83	-0.8
3,105,304	+		GFF3029	0.84	+0.4
3,105,309	+		GFF3029	0.84	-0.3
3,105,312	-		GFF3029	0.84	-1.1
3,105,312	-		GFF3029	0.84	+0.2
3,105,317	-		GFF3029	0.84	+1.2
3,105,318	+		GFF3029	0.85	-1.1
3,105,319	+		GFF3029	0.85	-0.3
3,105,326	-		GFF3029	0.85	+0.5
3,105,326	-		GFF3029	0.85	-0.8
3,105,333	+		GFF3029	0.85	+1.4
3,105,333	+		GFF3029	0.85	-2.0
3,105,333	+		GFF3029	0.85	+0.5
3,105,335	+		GFF3029	0.85	+2.3
3,105,338	+		GFF3029	0.85	-0.2
3,105,344	+		GFF3029	0.86	-1.0
3,105,352	-		GFF3029	0.86	-2.0
3,105,372	+		GFF3029	0.87	+0.1
3,105,390	+		GFF3029	0.88	+1.1
3,105,390	+		GFF3029	0.88	+0.5
3,105,398	-		GFF3029	0.88	-0.8
3,105,468	-				-0.3
3,105,502	-				+0.5
3,105,541	+				-1.1
3,105,564	+				-0.7
3,105,564	+				+0.2
3,105,612	+				-0.1
3,105,663	-				-0.3
3,105,665	-				-0.9
3,105,677	-				-0.5
3,105,678	-				+0.3
3,105,737	-		GFF3030	0.28	+0.3
3,105,818	+		GFF3030	0.79	-1.5
3,105,895	+				+0.3
3,105,895	+				+0.8
3,105,895	+				+0.2
3,105,895	+				+1.5
3,105,895	+				-0.5
3,105,897	+				-0.1
3,105,903	-				-0.5
3,105,903	-				-1.3
3,105,903	-				+0.3
3,105,903	-				-0.5
3,105,929	-				+0.7
3,105,971	-				+1.1
3,105,982	-				-0.3
3,105,982	-				-0.7
3,105,990	-				-0.5
3,106,004	+				+0.0
3,106,010	-				-0.1
3,106,016	-				+1.4
3,106,016	-				-1.4
3,106,082	-				-1.0
3,106,161	+				-1.6
3,106,171	+		GFF3031	0.11	+0.1
3,106,234	+		GFF3031	0.18	-0.9
3,106,262	-		GFF3031	0.21	+1.4
3,106,267	-		GFF3031	0.22	-0.3
3,106,275	-		GFF3031	0.23	+0.5
3,106,299	-		GFF3031	0.26	+0.2
3,106,303	-		GFF3031	0.26	+0.0
3,106,339	+		GFF3031	0.30	-0.2
3,106,339	+		GFF3031	0.30	+0.3
3,106,347	-		GFF3031	0.31	-1.3
3,106,347	-		GFF3031	0.31	+0.7
3,106,382	-		GFF3031	0.35	-0.4
3,106,413	+		GFF3031	0.39	-1.7
3,106,415	+		GFF3031	0.39	-0.5
3,106,444	+		GFF3031	0.42	-0.7
3,106,444	+		GFF3031	0.42	+1.2
3,106,451	+		GFF3031	0.43	+0.4
3,106,451	+		GFF3031	0.43	-0.8
3,106,452	-		GFF3031	0.43	-0.8
3,106,457	+		GFF3031	0.44	-1.1
3,106,457	+		GFF3031	0.44	+0.9
3,106,465	-		GFF3031	0.45	-2.6
3,106,465	-		GFF3031	0.45	+0.7
3,106,465	-		GFF3031	0.45	+0.9
3,106,506	-		GFF3031	0.49	+1.2
3,106,531	-		GFF3031	0.52	+0.2
3,106,540	-		GFF3031	0.53	-0.8
3,106,576	+		GFF3031	0.57	-0.4
3,106,578	+		GFF3031	0.58	+0.9
3,106,580	-		GFF3031	0.58	+0.8
3,106,622	+		GFF3031	0.63	+0.4
3,106,622	+		GFF3031	0.63	+1.3
3,106,630	-		GFF3031	0.63	+0.6