Strain Fitness in Sphingobium sp. HT1-2 around GFF3012

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,075,842	+		GFF3011	0.24	-2.3
3,075,847	+		GFF3011	0.25	+0.5
3,075,847	+		GFF3011	0.25	-1.1
3,075,855	-		GFF3011	0.25	-1.4
3,075,855	-		GFF3011	0.25	-0.3
3,075,855	-		GFF3011	0.25	-0.2
3,075,857	+		GFF3011	0.26	-1.1
3,075,865	-		GFF3011	0.26	-0.9
3,075,931	+		GFF3011	0.31	+0.1
3,075,937	+		GFF3011	0.32	-2.2
3,075,944	+		GFF3011	0.32	+0.4
3,075,944	+		GFF3011	0.32	-1.2
3,075,945	+		GFF3011	0.32	+0.6
3,075,945	+		GFF3011	0.32	+1.7
3,075,953	-		GFF3011	0.33	+0.5
3,075,968	+		GFF3011	0.34	+0.1
3,075,969	+		GFF3011	0.34	-0.2
3,075,969	+		GFF3011	0.34	-0.3
3,075,976	-		GFF3011	0.35	-0.6
3,075,976	-		GFF3011	0.35	-0.3
3,075,982	-		GFF3011	0.35	-2.6
3,075,987	-		GFF3011	0.35	-0.6
3,075,999	+		GFF3011	0.36	+0.2
3,076,001	-		GFF3011	0.36	-3.0
3,076,023	+		GFF3011	0.38	+0.5
3,076,023	-		GFF3011	0.38	+0.3
3,076,037	+		GFF3011	0.39	-0.8
3,076,053	+		GFF3011	0.40	+0.3
3,076,057	+		GFF3011	0.41	-1.4
3,076,061	-		GFF3011	0.41	-2.1
3,076,061	-		GFF3011	0.41	-1.7
3,076,061	-		GFF3011	0.41	-0.5
3,076,066	-		GFF3011	0.41	-0.0
3,076,101	+		GFF3011	0.44	-0.1
3,076,125	+		GFF3011	0.46	-0.5
3,076,130	+		GFF3011	0.46	-0.3
3,076,136	-		GFF3011	0.47	+0.4
3,076,143	+		GFF3011	0.47	+0.2
3,076,150	-		GFF3011	0.48	+0.1
3,076,153	+		GFF3011	0.48	-0.3
3,076,155	-		GFF3011	0.48	-1.9
3,076,156	-		GFF3011	0.48	+0.7
3,076,174	+		GFF3011	0.49	-0.9
3,076,174	+		GFF3011	0.49	-0.6
3,076,182	-		GFF3011	0.50	+0.8
3,076,204	+		GFF3011	0.52	-1.3
3,076,271	+		GFF3011	0.57	-1.6
3,076,333	-		GFF3011	0.61	+0.5
3,076,343	-		GFF3011	0.62	-0.4
3,076,391	+		GFF3011	0.66	-0.2
3,076,391	+		GFF3011	0.66	+0.6
3,076,391	+		GFF3011	0.66	+0.8
3,076,391	+		GFF3011	0.66	-0.3
3,076,391	+		GFF3011	0.66	+1.0
3,076,391	+		GFF3011	0.66	-0.9
3,076,391	+		GFF3011	0.66	-1.2
3,076,397	-		GFF3011	0.66	+0.6
3,076,399	-		GFF3011	0.66	-1.2
3,076,399	-		GFF3011	0.66	+0.9
3,076,399	-		GFF3011	0.66	-1.2
3,076,399	-		GFF3011	0.66	-0.4
3,076,399	-		GFF3011	0.66	+0.1
3,076,399	-		GFF3011	0.66	-0.8
3,076,399	-		GFF3011	0.66	-1.8
3,076,399	-		GFF3011	0.66	-0.7
3,076,399	-		GFF3011	0.66	-1.2
3,076,406	+		GFF3011	0.67	-1.1
3,076,409	-		GFF3011	0.67	+0.7
3,076,414	-		GFF3011	0.68	+0.6
3,076,419	+		GFF3011	0.68	-0.1
3,076,425	+		GFF3011	0.68	-0.3
3,076,425	+		GFF3011	0.68	+0.1
3,076,425	+		GFF3011	0.68	-1.3
3,076,425	+		GFF3011	0.68	-1.1
3,076,425	+		GFF3011	0.68	+0.5
3,076,425	+		GFF3011	0.68	-0.7
3,076,425	+		GFF3011	0.68	-3.0
3,076,425	+		GFF3011	0.68	-0.4
3,076,425	+		GFF3011	0.68	+1.1
3,076,425	+		GFF3011	0.68	-2.5
3,076,425	+		GFF3011	0.68	+0.7
3,076,425	+		GFF3011	0.68	+0.0
3,076,425	+		GFF3011	0.68	+0.7
3,076,433	-		GFF3011	0.69	-1.3
3,076,433	-		GFF3011	0.69	+0.9
3,076,433	-		GFF3011	0.69	-0.8
3,076,433	-		GFF3011	0.69	-1.1
3,076,433	-		GFF3011	0.69	-0.2
3,076,433	-		GFF3011	0.69	-1.2
3,076,433	-		GFF3011	0.69	-0.4
3,076,433	-		GFF3011	0.69	-0.7
3,076,433	-		GFF3011	0.69	-0.2
3,076,433	-		GFF3011	0.69	+1.3
3,076,435	+		GFF3011	0.69	-1.6
3,076,437	+		GFF3011	0.69	-0.9
3,076,437	+		GFF3011	0.69	-1.3
3,076,437	+		GFF3011	0.69	+0.6
3,076,442	+		GFF3011	0.70	-2.1
3,076,443	-		GFF3011	0.70	-0.7
3,076,450	-		GFF3011	0.70	-0.1
3,076,450	-		GFF3011	0.70	-0.6
3,076,450	-		GFF3011	0.70	-0.7
3,076,526	+		GFF3011	0.76	-2.3
3,076,526	+		GFF3011	0.76	-0.7
3,076,526	+		GFF3011	0.76	+0.5
3,076,526	+		GFF3011	0.76	-0.1
3,076,526	+		GFF3011	0.76	-1.5
3,076,526	+		GFF3011	0.76	-1.6
3,076,526	+		GFF3011	0.76	-0.1
3,076,526	+		GFF3011	0.76	-0.6
3,076,526	+		GFF3011	0.76	-1.3
3,076,526	+		GFF3011	0.76	-1.8
3,076,526	+		GFF3011	0.76	-0.3
3,076,526	+		GFF3011	0.76	-1.5
3,076,534	-		GFF3011	0.77	+0.2
3,076,534	-		GFF3011	0.77	-1.4
3,076,534	-		GFF3011	0.77	-1.0
3,076,534	-		GFF3011	0.77	+0.4
3,076,534	-		GFF3011	0.77	-0.4
3,076,534	-		GFF3011	0.77	-0.9
3,076,534	-		GFF3011	0.77	-0.2
3,076,534	-		GFF3011	0.77	+0.6
3,076,534	-		GFF3011	0.77	+1.1
3,076,534	-		GFF3011	0.77	-1.9
3,076,534	-		GFF3011	0.77	-0.7
3,076,534	-		GFF3011	0.77	+0.0
3,076,534	-		GFF3011	0.77	-0.3
3,076,543	-		GFF3011	0.77	-1.3
3,076,544	-		GFF3011	0.77	-1.5
3,076,570	+		GFF3011	0.79	-1.0
3,076,575	+		GFF3011	0.80	-0.4
3,076,575	+		GFF3011	0.80	+1.2
3,076,583	-		GFF3011	0.80	-1.8
3,076,601	+		GFF3011	0.82	-1.0
3,076,625	-		GFF3011	0.83	-0.1
3,076,629	-		GFF3011	0.84	-0.5
3,076,661	-		GFF3011	0.86	-1.6
3,076,672	+		GFF3011	0.87	+0.6
3,076,685	-		GFF3011	0.88	-0.2
3,076,689	+		GFF3011	0.88	-1.6
3,076,699	+		GFF3011	0.89	+0.6
3,076,699	+		GFF3011	0.89	-0.3
3,076,707	-		GFF3011	0.90	-1.0
3,076,707	-		GFF3011	0.90	-1.1
3,076,716	+				+0.3
3,076,716	+				+0.2
3,076,722	+				-0.7
3,076,733	+				-1.6
3,076,791	+				-1.7
3,076,796	+				-0.3
3,076,796	+				-0.1
3,076,814	+				-0.6
3,076,814	+				+0.3
3,076,814	+				+1.1
3,076,814	+				+0.7
3,076,814	+				+0.7
3,076,822	-				-1.2
3,076,838	+				-0.5
3,076,838	+				-1.2
3,076,838	+				-0.4
3,076,838	+				-1.4
3,076,838	+				-0.7
3,076,838	+				-0.5
3,076,838	+				+0.5
3,076,838	+				-0.0
3,076,841	-				-0.9
3,076,846	-				+1.3
3,076,846	-				+0.2
3,076,846	-				-0.2
3,076,846	-				-2.0
3,076,846	-				-2.1
3,076,846	-				+0.6
3,076,846	-				-1.4
3,076,846	-				-0.6
3,076,859	+				+2.4
3,076,859	+				-0.7
3,076,874	-				-1.2
3,076,882	-				-0.3
3,076,887	-				-0.3
3,076,895	+				-0.2
3,076,903	-				-0.7
3,076,903	-				+0.4
3,076,915	-				-0.2
3,076,921	+				-1.7
3,076,934	-				+1.4
3,076,937	+				-0.6
3,076,938	-				-0.3
3,076,938	-				-0.9
3,076,945	-				+0.1
3,076,959	+				-1.7
3,076,959	+				-0.6
3,076,959	+				-1.2
3,076,967	-				+1.5
3,076,967	-				+0.5
3,076,967	-				-2.5
3,076,991	+		GFF3012	0.12	-1.1
3,076,991	+		GFF3012	0.12	-1.0
3,076,991	+		GFF3012	0.12	+1.0
3,076,991	+		GFF3012	0.12	+0.8
3,076,991	+		GFF3012	0.12	+0.4
3,076,991	+		GFF3012	0.12	-0.2
3,076,999	-		GFF3012	0.12	-0.2
3,076,999	-		GFF3012	0.12	-0.1
3,076,999	-		GFF3012	0.12	+0.6
3,077,001	+		GFF3012	0.13	-2.5
3,077,001	+		GFF3012	0.13	+0.3
3,077,001	+		GFF3012	0.13	-1.4
3,077,036	+		GFF3012	0.15	-0.4
3,077,067	+		GFF3012	0.18	+0.9
3,077,067	+		GFF3012	0.18	+0.1
3,077,070	-		GFF3012	0.18	-1.9
3,077,075	-		GFF3012	0.18	-0.1
3,077,080	+		GFF3012	0.19	-1.5
3,077,109	-		GFF3012	0.21	+0.2
3,077,152	+		GFF3012	0.24	-0.0
3,077,211	-		GFF3012	0.29	-0.5
3,077,244	+		GFF3012	0.32	-0.9
3,077,270	+		GFF3012	0.34	-0.2
3,077,270	+		GFF3012	0.34	-0.1
3,077,278	-		GFF3012	0.34	+0.3
3,077,278	-		GFF3012	0.34	+1.5
3,077,278	-		GFF3012	0.34	-0.2
3,077,294	+		GFF3012	0.36	+0.7
3,077,294	+		GFF3012	0.36	-0.5
3,077,294	+		GFF3012	0.36	-1.3
3,077,295	-		GFF3012	0.36	-0.2
3,077,299	+		GFF3012	0.36	-0.0
3,077,301	+		GFF3012	0.36	-1.3
3,077,302	-		GFF3012	0.36	+0.8
3,077,302	-		GFF3012	0.36	-0.7
3,077,309	-		GFF3012	0.37	+0.6
3,077,313	+		GFF3012	0.37	+1.0
3,077,332	+		GFF3012	0.38	-2.7
3,077,332	+		GFF3012	0.38	-0.4
3,077,340	-		GFF3012	0.39	-1.5
3,077,345	-		GFF3012	0.40	-0.0
3,077,347	+		GFF3012	0.40	-1.4
3,077,347	+		GFF3012	0.40	-0.5
3,077,355	-		GFF3012	0.40	+0.2
3,077,370	-		GFF3012	0.41	+0.5
3,077,371	-		GFF3012	0.42	-0.0
3,077,374	+		GFF3012	0.42	-2.5
3,077,389	-		GFF3012	0.43	-1.0
3,077,396	-		GFF3012	0.44	+0.4
3,077,396	-		GFF3012	0.44	+0.7
3,077,398	+		GFF3012	0.44	+0.8
3,077,401	-		GFF3012	0.44	+0.9
3,077,405	+		GFF3012	0.44	-0.2
3,077,413	-		GFF3012	0.45	+0.5
3,077,414	+		GFF3012	0.45	-0.0
3,077,433	+		GFF3012	0.46	+0.0
3,077,433	+		GFF3012	0.46	+0.6
3,077,434	+		GFF3012	0.46	-0.7
3,077,441	-		GFF3012	0.47	+0.2
3,077,442	-		GFF3012	0.47	-0.4
3,077,442	-		GFF3012	0.47	-0.2
3,077,459	+		GFF3012	0.48	+0.2
3,077,459	+		GFF3012	0.48	-0.2
3,077,459	+		GFF3012	0.48	-1.1
3,077,460	-		GFF3012	0.49	+1.4
3,077,468	-		GFF3012	0.49	+2.1
3,077,480	+		GFF3012	0.50	+0.1
3,077,493	-		GFF3012	0.51	-0.7
3,077,496	+		GFF3012	0.51	-0.8
3,077,528	+		GFF3012	0.54	-0.9
3,077,528	+		GFF3012	0.54	+0.6
3,077,536	-		GFF3012	0.54	-0.4
3,077,538	+		GFF3012	0.55	-0.2
3,077,538	+		GFF3012	0.55	+0.9
3,077,538	+		GFF3012	0.55	-2.0
3,077,538	+		GFF3012	0.55	-0.1
3,077,546	-		GFF3012	0.55	-1.6
3,077,551	+		GFF3012	0.56	-0.4
3,077,556	+		GFF3012	0.56	-0.1
3,077,586	+		GFF3012	0.58	-0.7
3,077,586	+		GFF3012	0.58	-0.1
3,077,586	+		GFF3012	0.58	-0.2
3,077,586	+		GFF3012	0.58	+0.4
3,077,594	-		GFF3012	0.59	+0.9
3,077,594	-		GFF3012	0.59	-0.8
3,077,594	-		GFF3012	0.59	+0.3
3,077,594	-		GFF3012	0.59	+1.4
3,077,594	-		GFF3012	0.59	+1.2
3,077,601	+		GFF3012	0.60	-0.3
3,077,601	+		GFF3012	0.60	-0.1
3,077,601	+		GFF3012	0.60	-1.7
3,077,601	+		GFF3012	0.60	-0.0
3,077,601	+		GFF3012	0.60	+0.5
3,077,601	+		GFF3012	0.60	+1.5
3,077,601	+		GFF3012	0.60	+0.3
3,077,609	-		GFF3012	0.60	-1.1
3,077,609	-		GFF3012	0.60	-0.9
3,077,609	-		GFF3012	0.60	-1.4
3,077,668	-		GFF3012	0.65	-0.9
3,077,682	+		GFF3012	0.66	+0.1
3,077,690	-		GFF3012	0.67	-1.1
3,077,698	+		GFF3012	0.67	-1.7
3,077,706	-		GFF3012	0.68	+0.1
3,077,706	-		GFF3012	0.68	+0.8
3,077,772	+		GFF3012	0.73	-0.2
3,077,776	+		GFF3012	0.73	-0.9
3,077,776	+		GFF3012	0.73	-1.1
3,077,776	+		GFF3012	0.73	-0.2
3,077,784	-		GFF3012	0.74	+0.4
3,077,784	-		GFF3012	0.74	+0.0
3,077,784	-		GFF3012	0.74	-0.3
3,077,801	+		GFF3012	0.75	-3.8
3,077,811	+		GFF3012	0.76	-1.5
3,077,811	+		GFF3012	0.76	-2.3
3,077,811	+		GFF3012	0.76	-0.8
3,077,811	+		GFF3012	0.76	+0.9
3,077,819	-		GFF3012	0.77	-0.9
3,077,819	-		GFF3012	0.77	-1.9
3,077,819	-		GFF3012	0.77	+0.2
3,077,819	-		GFF3012	0.77	-0.0
3,077,819	-		GFF3012	0.77	+0.5
3,077,830	-		GFF3012	0.77	-2.2
3,077,835	+		GFF3012	0.78	+1.4
3,077,843	-		GFF3012	0.78	-1.4
3,077,843	-		GFF3012	0.78	+0.4
3,077,845	-		GFF3012	0.79	-1.7
3,077,867	+		GFF3012	0.80	-1.6
3,077,867	+		GFF3012	0.80	+0.6
3,077,867	+		GFF3012	0.80	-0.8
3,077,875	-		GFF3012	0.81	+0.1
3,077,889	+		GFF3012	0.82	-0.5
3,077,893	+		GFF3012	0.82	-1.9
3,077,913	+		GFF3012	0.84	+0.3
3,077,913	+		GFF3012	0.84	+0.4
3,077,913	+		GFF3012	0.84	+0.8
3,077,913	+		GFF3012	0.84	+0.5
3,077,918	+		GFF3012	0.84	-1.2
3,077,921	-		GFF3012	0.85	+0.4
3,077,921	-		GFF3012	0.85	-0.6
3,077,921	-		GFF3012	0.85	-0.5
3,077,921	-		GFF3012	0.85	-0.7
3,077,921	-		GFF3012	0.85	+0.5
3,077,921	-		GFF3012	0.85	-1.1
3,077,921	-		GFF3012	0.85	+0.4
3,077,921	-		GFF3012	0.85	-1.3
3,077,921	-		GFF3012	0.85	-0.0
3,077,921	-		GFF3012	0.85	+1.2
3,077,921	-		GFF3012	0.85	-0.3
3,077,971	+		GFF3012	0.88	-2.3
3,077,979	-		GFF3012	0.89	-1.0
3,077,979	-		GFF3012	0.89	-0.4
3,077,979	-		GFF3012	0.89	+0.1
3,077,979	-		GFF3012	0.89	+0.5
3,077,979	-		GFF3012	0.89	+0.5
3,078,007	+				+0.5
3,078,015	-				+0.4
3,078,015	-				+0.2
3,078,015	-				+0.4
3,078,029	+				-0.5
3,078,044	+				-0.6
3,078,048	-				-0.0
3,078,049	+				+0.1
3,078,054	+				-0.5
3,078,054	+				+0.2
3,078,057	-				+0.3
3,078,057	-				+0.2
3,078,062	-				-0.0
3,078,062	-				-1.3
3,078,062	-				-1.8
3,078,091	+				-1.5
3,078,108	-				-1.8
3,078,110	-				+0.2
3,078,117	-				+1.2
3,078,129	+				+0.5
3,078,135	+				+1.9
3,078,145	+				-0.1
3,078,154	+				+0.7
3,078,162	-				-0.9
3,078,162	-				+0.5
3,078,162	-				+0.1
3,078,162	-				-0.0
3,078,164	+				+1.4
3,078,164	+				+0.6
3,078,164	+				-2.1
3,078,164	+				-1.7
3,078,177	-				-0.0
3,078,180	-				-0.5
3,078,182	-				-2.1
3,078,210	-				+0.0
3,078,233	+				+0.6
3,078,235	+				-0.6
3,078,240	+				+1.0
3,078,243	-				-1.6
3,078,245	+				+0.1
3,078,245	+				-0.8
3,078,245	+				-0.5
3,078,245	+				+0.6
3,078,245	+				-1.1
3,078,245	+				-1.4
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3,078,253	-				+0.2
3,078,253	-				+0.1
3,078,253	-				+0.7
3,078,253	-				-0.4
3,078,253	-				-0.4
3,078,253	-				-1.1
3,078,253	-				-0.6
3,078,253	-				-1.5
3,078,253	-				-1.3
3,078,253	-				-0.2
3,078,258	-				+0.5
3,078,258	-				+1.6
3,078,258	-				-1.6
3,078,258	-				+2.0
3,078,289	-				-0.9
3,078,296	-				+1.0
3,078,299	+				-0.6
3,078,299	+				-0.3
3,078,306	+				-0.6
3,078,307	+				+1.4
3,078,307	+				-0.2
3,078,317	-				+0.3
3,078,360	-				+0.4
3,078,363	+				-0.3
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3,078,363	+				-1.3
3,078,363	+				-0.7
3,078,363	+				-0.7
3,078,363	+				-2.0
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3,078,371	-				-1.5
3,078,371	-				-1.5
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3,078,372	-				+0.1
3,078,372	-				+1.3
3,078,372	-				+0.7
3,078,383	-				-0.9
3,078,386	+				+0.1
3,078,396	+				-0.8
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3,078,560	-		GFF3013	0.17	-1.9
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3,078,560	-		GFF3013	0.17	-1.0
3,078,560	-		GFF3013	0.17	-1.4
3,078,560	-		GFF3013	0.17	-0.5
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3,078,588	-		GFF3013	0.19	-1.6
3,078,592	-		GFF3013	0.19	-1.3
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3,078,645	-		GFF3013	0.21	-0.4
3,078,645	-		GFF3013	0.21	-0.1
3,078,645	-		GFF3013	0.21	-0.2
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3,078,657	-		GFF3013	0.22	-0.6
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3,078,860	+		GFF3013	0.31	+0.2
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3,078,881	+		GFF3013	0.32	-1.2
3,078,884	+		GFF3013	0.32	-0.2
3,078,889	+		GFF3013	0.33	-2.0
3,078,889	+		GFF3013	0.33	-1.0
3,078,897	-		GFF3013	0.33	-0.4
3,078,899	+		GFF3013	0.33	+0.7
3,078,899	+		GFF3013	0.33	+0.3
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3,078,907	-		GFF3013	0.33	+0.7
3,078,907	-		GFF3013	0.33	-0.6
3,078,914	+		GFF3013	0.34	+0.1
3,078,922	-		GFF3013	0.34	-2.4
3,078,922	-		GFF3013	0.34	+0.3
3,078,932	-		GFF3013	0.35	+0.8
3,078,934	+		GFF3013	0.35	-1.5
3,078,940	+		GFF3013	0.35	-1.6
3,078,940	-		GFF3013	0.35	-2.2
3,078,992	-		GFF3013	0.37	+0.3
3,079,025	-		GFF3013	0.39	+0.1
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3,079,043	-		GFF3013	0.40	-2.2
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3,079,110	-		GFF3013	0.43	-0.5
3,079,112	+		GFF3013	0.43	-1.2