Strain Fitness in Sphingobium sp. HT1-2 around GFF3002

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,060,821	-				-0.9
3,060,821	-				-0.4
3,060,830	+				-0.1
3,060,838	-				+1.0
3,060,852	+		GFF3001	0.11	+0.4
3,060,852	+		GFF3001	0.11	-0.8
3,060,860	+		GFF3001	0.12	-0.4
3,060,860	+		GFF3001	0.12	+0.1
3,060,860	+		GFF3001	0.12	+0.5
3,060,868	-		GFF3001	0.13	+0.4
3,060,893	+		GFF3001	0.15	-0.3
3,060,898	-		GFF3001	0.16	+0.7
3,060,901	+		GFF3001	0.16	-0.6
3,060,901	-		GFF3001	0.16	+0.5
3,060,901	-		GFF3001	0.16	-2.1
3,060,903	+		GFF3001	0.16	-0.1
3,060,903	+		GFF3001	0.16	+0.1
3,060,903	+		GFF3001	0.16	-0.7
3,060,903	+		GFF3001	0.16	-0.2
3,060,903	+		GFF3001	0.16	-0.7
3,060,911	-		GFF3001	0.17	-0.3
3,060,911	-		GFF3001	0.17	-1.4
3,060,911	-		GFF3001	0.17	+0.2
3,060,911	-		GFF3001	0.17	-0.2
3,060,920	-		GFF3001	0.18	+0.9
3,060,942	+		GFF3001	0.20	-1.4
3,060,947	+		GFF3001	0.21	-0.4
3,060,947	+		GFF3001	0.21	-1.3
3,060,947	+		GFF3001	0.21	+1.8
3,060,947	+		GFF3001	0.21	+0.5
3,060,953	+		GFF3001	0.21	-0.0
3,060,953	+		GFF3001	0.21	-0.1
3,060,953	+		GFF3001	0.21	-0.0
3,060,960	+		GFF3001	0.22	-0.0
3,060,961	-		GFF3001	0.22	+1.4
3,060,961	-		GFF3001	0.22	+1.6
3,060,961	-		GFF3001	0.22	-0.8
3,060,968	-		GFF3001	0.23	-0.2
3,060,982	+		GFF3001	0.24	+0.0
3,060,989	-		GFF3001	0.25	+0.8
3,060,989	-		GFF3001	0.25	-0.4
3,060,991	+		GFF3001	0.25	+0.5
3,061,002	-		GFF3001	0.26	+0.9
3,061,004	+		GFF3001	0.26	-2.1
3,061,042	-		GFF3001	0.30	+0.4
3,061,042	-		GFF3001	0.30	-0.4
3,061,090	+		GFF3001	0.34	-1.6
3,061,098	-		GFF3001	0.35	-2.3
3,061,106	-		GFF3001	0.36	+0.3
3,061,117	+		GFF3001	0.37	-0.2
3,061,125	-		GFF3001	0.38	+1.0
3,061,132	-		GFF3001	0.38	-2.1
3,061,136	+		GFF3001	0.39	+0.9
3,061,144	-		GFF3001	0.40	+0.3
3,061,144	-		GFF3001	0.40	-0.3
3,061,170	-		GFF3001	0.42	+0.1
3,061,172	+		GFF3001	0.42	-0.2
3,061,177	+		GFF3001	0.43	-0.4
3,061,178	+		GFF3001	0.43	-0.0
3,061,213	-		GFF3001	0.46	+1.5
3,061,222	-		GFF3001	0.47	-0.0
3,061,263	-		GFF3001	0.51	+0.8
3,061,263	-		GFF3001	0.51	-0.5
3,061,265	+		GFF3001	0.51	-0.1
3,061,265	+		GFF3001	0.51	-0.3
3,061,265	+		GFF3001	0.51	+0.2
3,061,265	+		GFF3001	0.51	+0.2
3,061,265	+		GFF3001	0.51	+0.6
3,061,265	+		GFF3001	0.51	-0.4
3,061,265	+		GFF3001	0.51	+0.6
3,061,273	-		GFF3001	0.52	-0.6
3,061,273	-		GFF3001	0.52	+1.1
3,061,273	-		GFF3001	0.52	-0.6
3,061,281	+		GFF3001	0.53	-0.7
3,061,289	-		GFF3001	0.54	-0.4
3,061,292	+		GFF3001	0.54	-1.2
3,061,292	+		GFF3001	0.54	-0.8
3,061,300	-		GFF3001	0.55	-0.6
3,061,302	+		GFF3001	0.55	+0.4
3,061,302	-		GFF3001	0.55	+0.6
3,061,307	+		GFF3001	0.55	-0.0
3,061,310	-		GFF3001	0.56	+0.7
3,061,310	-		GFF3001	0.56	-0.2
3,061,314	+		GFF3001	0.56	-0.6
3,061,320	-		GFF3001	0.57	+0.6
3,061,322	-		GFF3001	0.57	+0.8
3,061,327	-		GFF3001	0.57	-1.0
3,061,329	+		GFF3001	0.58	+0.4
3,061,329	+		GFF3001	0.58	+0.3
3,061,337	-		GFF3001	0.58	-0.7
3,061,337	-		GFF3001	0.58	-1.1
3,061,344	+		GFF3001	0.59	-0.7
3,061,345	+		GFF3001	0.59	-0.1
3,061,345	+		GFF3001	0.59	-0.1
3,061,350	+		GFF3001	0.60	-0.3
3,061,352	-		GFF3001	0.60	+0.6
3,061,353	-		GFF3001	0.60	+1.0
3,061,378	-		GFF3001	0.62	+0.1
3,061,415	+		GFF3001	0.66	-0.1
3,061,451	+		GFF3001	0.69	-0.4
3,061,451	+		GFF3001	0.69	-1.2
3,061,451	+		GFF3001	0.69	+0.3
3,061,451	+		GFF3001	0.69	-0.6
3,061,451	+		GFF3001	0.69	-1.0
3,061,459	-		GFF3001	0.70	+0.7
3,061,459	-		GFF3001	0.70	+0.1
3,061,459	-		GFF3001	0.70	+0.7
3,061,459	-		GFF3001	0.70	-0.6
3,061,459	-		GFF3001	0.70	-0.7
3,061,459	-		GFF3001	0.70	+0.2
3,061,459	-		GFF3001	0.70	-0.6
3,061,471	+		GFF3001	0.71	-0.7
3,061,471	+		GFF3001	0.71	+0.1
3,061,471	+		GFF3001	0.71	-0.2
3,061,479	-		GFF3001	0.72	-0.0
3,061,479	-		GFF3001	0.72	+1.1
3,061,479	-		GFF3001	0.72	+0.5
3,061,479	-		GFF3001	0.72	+0.3
3,061,479	-		GFF3001	0.72	+0.7
3,061,479	-		GFF3001	0.72	-0.3
3,061,479	-		GFF3001	0.72	-0.8
3,061,479	-		GFF3001	0.72	-0.5
3,061,479	-		GFF3001	0.72	-2.3
3,061,479	-		GFF3001	0.72	-0.4
3,061,479	-		GFF3001	0.72	-0.6
3,061,479	-		GFF3001	0.72	+0.6
3,061,483	+		GFF3001	0.73	+1.4
3,061,485	+		GFF3001	0.73	-1.6
3,061,485	+		GFF3001	0.73	+0.7
3,061,485	+		GFF3001	0.73	-1.7
3,061,485	+		GFF3001	0.73	-2.3
3,061,489	-		GFF3001	0.73	-0.4
3,061,491	-		GFF3001	0.73	-1.5
3,061,493	-		GFF3001	0.74	+0.5
3,061,493	-		GFF3001	0.74	-0.0
3,061,495	+		GFF3001	0.74	-1.6
3,061,495	+		GFF3001	0.74	-0.2
3,061,495	+		GFF3001	0.74	-1.3
3,061,495	+		GFF3001	0.74	-1.8
3,061,495	+		GFF3001	0.74	+1.2
3,061,495	+		GFF3001	0.74	+0.4
3,061,495	+		GFF3001	0.74	-0.2
3,061,503	-		GFF3001	0.75	-0.8
3,061,503	-		GFF3001	0.75	-0.6
3,061,505	+		GFF3001	0.75	-0.2
3,061,505	+		GFF3001	0.75	+1.6
3,061,512	+		GFF3001	0.75	+0.7
3,061,513	-		GFF3001	0.76	-1.1
3,061,513	-		GFF3001	0.76	-0.8
3,061,531	-		GFF3001	0.77	+1.0
3,061,534	+		GFF3001	0.78	-1.3
3,061,542	-		GFF3001	0.78	-1.1
3,061,547	-		GFF3001	0.79	-0.3
3,061,550	-		GFF3001	0.79	-0.6
3,061,571	+		GFF3001	0.81	-2.6
3,061,575	+		GFF3001	0.82	-1.8
3,061,583	+		GFF3001	0.82	-1.2
3,061,616	+		GFF3001	0.86	-0.3
3,061,616	+		GFF3001	0.86	+0.3
3,061,616	+		GFF3001	0.86	-0.4
3,061,624	-		GFF3001	0.86	-0.1
3,061,624	-		GFF3001	0.86	+1.2
3,061,624	-		GFF3001	0.86	-2.0
3,061,634	+		GFF3001	0.87	+1.5
3,061,638	+		GFF3001	0.88	+2.7
3,061,651	+		GFF3001	0.89	+1.2
3,061,651	+		GFF3001	0.89	-2.5
3,061,651	+		GFF3001	0.89	+0.7
3,061,651	+		GFF3001	0.89	-1.5
3,061,651	+		GFF3001	0.89	+0.9
3,061,651	+		GFF3001	0.89	+1.7
3,061,651	+		GFF3001	0.89	-0.6
3,061,656	+		GFF3001	0.89	+0.1
3,061,656	+		GFF3001	0.89	-0.2
3,061,656	+		GFF3001	0.89	+1.3
3,061,656	+		GFF3001	0.89	-1.3
3,061,656	+		GFF3001	0.89	+0.4
3,061,656	+		GFF3001	0.89	-1.1
3,061,656	+		GFF3001	0.89	-1.2
3,061,659	-		GFF3001	0.90	-1.6
3,061,659	-		GFF3001	0.90	+0.8
3,061,659	-		GFF3001	0.90	-0.9
3,061,659	-		GFF3001	0.90	+0.4
3,061,659	-		GFF3001	0.90	+0.9
3,061,659	-		GFF3001	0.90	-1.5
3,061,659	-		GFF3001	0.90	-1.9
3,061,664	-				-0.0
3,061,664	-				-0.5
3,061,664	-				+0.1
3,061,689	+				+0.3
3,061,699	+				+0.8
3,061,700	+				-0.2
3,061,708	-				+0.6
3,061,708	-				-0.5
3,061,708	-				-1.1
3,061,713	-				+0.2
3,061,725	-				-0.6
3,061,728	+				-0.3
3,061,736	-				-1.1
3,061,743	-				+0.0
3,061,805	+				+0.1
3,061,829	-				-0.9
3,061,831	+				-1.7
3,061,831	+				+0.1
3,061,831	+				-0.2
3,061,831	+				+0.5
3,061,839	-				+0.4
3,061,839	-				+0.4
3,061,857	+				-1.1
3,061,857	+				-1.1
3,061,857	-				-0.7
3,061,912	-				-0.1
3,061,912	-				+0.2
3,061,925	+				+0.1
3,061,925	+				+1.0
3,062,015	+		GFF3002	0.14	-2.0
3,062,023	-		GFF3002	0.14	-0.2
3,062,025	+		GFF3002	0.15	+0.4
3,062,025	+		GFF3002	0.15	+0.0
3,062,025	+		GFF3002	0.15	+0.4
3,062,025	+		GFF3002	0.15	-1.4
3,062,027	-		GFF3002	0.15	+0.1
3,062,030	+		GFF3002	0.15	+2.4
3,062,030	+		GFF3002	0.15	+0.1
3,062,033	-		GFF3002	0.15	+1.1
3,062,033	-		GFF3002	0.15	+0.7
3,062,033	-		GFF3002	0.15	-0.3
3,062,038	-		GFF3002	0.15	-1.5
3,062,040	+		GFF3002	0.16	+0.1
3,062,040	+		GFF3002	0.16	-0.6
3,062,040	+		GFF3002	0.16	-1.4
3,062,041	+		GFF3002	0.16	-1.4
3,062,048	-		GFF3002	0.16	-0.2
3,062,049	-		GFF3002	0.16	-0.5
3,062,049	-		GFF3002	0.16	-0.0
3,062,058	+		GFF3002	0.17	+0.4
3,062,059	+		GFF3002	0.17	+0.3
3,062,081	+		GFF3002	0.18	-0.1
3,062,082	-		GFF3002	0.18	+0.3
3,062,117	+		GFF3002	0.21	-1.1
3,062,117	+		GFF3002	0.21	+0.9
3,062,117	+		GFF3002	0.21	-1.7
3,062,125	-		GFF3002	0.21	-0.6
3,062,136	+		GFF3002	0.22	-1.2
3,062,138	-		GFF3002	0.22	-2.3
3,062,139	-		GFF3002	0.22	-0.3
3,062,175	-		GFF3002	0.25	-1.1
3,062,212	-		GFF3002	0.28	-1.2
3,062,220	+		GFF3002	0.28	-1.2
3,062,220	+		GFF3002	0.28	-0.9
3,062,223	+		GFF3002	0.28	+0.2
3,062,223	+		GFF3002	0.28	-1.2
3,062,223	+		GFF3002	0.28	-2.1
3,062,223	+		GFF3002	0.28	+0.2
3,062,226	-		GFF3002	0.29	-0.5
3,062,231	+		GFF3002	0.29	-1.7
3,062,231	-		GFF3002	0.29	-0.9
3,062,233	-		GFF3002	0.29	+0.0
3,062,236	+		GFF3002	0.29	-0.4
3,062,241	+		GFF3002	0.30	+1.5
3,062,246	+		GFF3002	0.30	-0.2
3,062,254	-		GFF3002	0.30	-1.6
3,062,265	+		GFF3002	0.31	-1.4
3,062,266	-		GFF3002	0.31	+0.7
3,062,278	-		GFF3002	0.32	-1.6
3,062,278	-		GFF3002	0.32	-1.0
3,062,278	-		GFF3002	0.32	-1.3
3,062,281	+		GFF3002	0.32	-0.7
3,062,282	+		GFF3002	0.32	-1.9
3,062,291	+		GFF3002	0.33	+0.4
3,062,291	+		GFF3002	0.33	-1.9
3,062,291	+		GFF3002	0.33	-0.5
3,062,291	+		GFF3002	0.33	-1.8
3,062,291	+		GFF3002	0.33	+0.4
3,062,299	-		GFF3002	0.34	+0.8
3,062,299	-		GFF3002	0.34	+0.6
3,062,299	-		GFF3002	0.34	+0.1
3,062,299	-		GFF3002	0.34	-1.1
3,062,299	-		GFF3002	0.34	+1.1
3,062,299	-		GFF3002	0.34	-2.0
3,062,299	-		GFF3002	0.34	+0.7
3,062,301	+		GFF3002	0.34	-0.6
3,062,336	+		GFF3002	0.36	+0.5
3,062,346	+		GFF3002	0.37	+1.5
3,062,356	+		GFF3002	0.38	-0.8
3,062,361	+		GFF3002	0.38	-1.2
3,062,365	-		GFF3002	0.38	+1.1
3,062,366	+		GFF3002	0.38	+0.3
3,062,372	+		GFF3002	0.39	+0.0
3,062,382	-		GFF3002	0.39	+0.3
3,062,404	-		GFF3002	0.41	+1.2
3,062,418	+		GFF3002	0.42	+1.3
3,062,426	-		GFF3002	0.42	+0.5
3,062,453	-		GFF3002	0.44	+0.0
3,062,457	-		GFF3002	0.45	-0.1
3,062,458	-		GFF3002	0.45	-1.3
3,062,463	-		GFF3002	0.45	-1.5
3,062,464	+		GFF3002	0.45	+1.0
3,062,466	+		GFF3002	0.45	-2.0
3,062,466	+		GFF3002	0.45	+0.2
3,062,466	+		GFF3002	0.45	-0.8
3,062,466	+		GFF3002	0.45	+0.1
3,062,466	+		GFF3002	0.45	-0.2
3,062,466	+		GFF3002	0.45	-2.3
3,062,466	+		GFF3002	0.45	-1.6
3,062,472	-		GFF3002	0.46	-1.2
3,062,472	-		GFF3002	0.46	-0.3
3,062,474	+		GFF3002	0.46	-0.0
3,062,474	-		GFF3002	0.46	-0.0
3,062,474	-		GFF3002	0.46	-2.3
3,062,474	-		GFF3002	0.46	+0.8
3,062,474	-		GFF3002	0.46	+1.4
3,062,474	-		GFF3002	0.46	-0.2
3,062,474	-		GFF3002	0.46	-1.4
3,062,474	-		GFF3002	0.46	-0.5
3,062,474	-		GFF3002	0.46	-0.3
3,062,474	-		GFF3002	0.46	-2.4
3,062,481	+		GFF3002	0.46	+0.1
3,062,481	+		GFF3002	0.46	+0.6
3,062,481	+		GFF3002	0.46	+1.0
3,062,481	+		GFF3002	0.46	-0.6
3,062,481	+		GFF3002	0.46	-0.9
3,062,481	+		GFF3002	0.46	+0.6
3,062,481	+		GFF3002	0.46	+1.6
3,062,481	+		GFF3002	0.46	-0.5
3,062,481	+		GFF3002	0.46	-0.3
3,062,481	+		GFF3002	0.46	-1.3
3,062,481	+		GFF3002	0.46	+1.2
3,062,481	+		GFF3002	0.46	+0.1
3,062,489	-		GFF3002	0.47	-0.5
3,062,489	-		GFF3002	0.47	+1.0
3,062,489	-		GFF3002	0.47	-0.3
3,062,489	-		GFF3002	0.47	+0.1
3,062,489	-		GFF3002	0.47	-0.1
3,062,489	-		GFF3002	0.47	-0.4
3,062,489	-		GFF3002	0.47	-0.3
3,062,489	-		GFF3002	0.47	+0.5
3,062,492	+		GFF3002	0.47	-1.7
3,062,530	+		GFF3002	0.50	-0.1
3,062,530	+		GFF3002	0.50	-1.0
3,062,530	+		GFF3002	0.50	+0.9
3,062,538	-		GFF3002	0.50	+0.0
3,062,538	-		GFF3002	0.50	+0.7
3,062,561	-		GFF3002	0.52	+0.5
3,062,566	+		GFF3002	0.52	+1.5
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