Strain Fitness in Sphingobium sp. HT1-2 around GFF2997

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,055,146	-		GFF2996	0.40	+0.4
3,055,154	+		GFF2996	0.41	-0.2
3,055,159	+		GFF2996	0.41	-2.0
3,055,162	-		GFF2996	0.42	+0.9
3,055,164	+		GFF2996	0.42	-1.1
3,055,164	+		GFF2996	0.42	+0.1
3,055,169	+		GFF2996	0.42	-0.2
3,055,172	-		GFF2996	0.42	-1.3
3,055,172	-		GFF2996	0.42	+0.6
3,055,177	-		GFF2996	0.43	-0.8
3,055,179	+		GFF2996	0.43	-1.2
3,055,179	+		GFF2996	0.43	-1.4
3,055,179	+		GFF2996	0.43	-1.6
3,055,179	+		GFF2996	0.43	-1.1
3,055,179	+		GFF2996	0.43	-0.3
3,055,180	+		GFF2996	0.43	+0.2
3,055,180	+		GFF2996	0.43	-1.1
3,055,180	+		GFF2996	0.43	+1.5
3,055,184	+		GFF2996	0.43	-0.2
3,055,187	-		GFF2996	0.44	-1.6
3,055,187	-		GFF2996	0.44	-0.1
3,055,188	-		GFF2996	0.44	+0.4
3,055,190	+		GFF2996	0.44	+1.1
3,055,205	-		GFF2996	0.45	+0.7
3,055,205	-		GFF2996	0.45	+0.5
3,055,216	+		GFF2996	0.46	-0.1
3,055,224	-		GFF2996	0.46	+0.4
3,055,226	+		GFF2996	0.47	-2.0
3,055,234	-		GFF2996	0.47	-0.4
3,055,246	-		GFF2996	0.48	+0.4
3,055,256	+		GFF2996	0.49	-0.2
3,055,257	+		GFF2996	0.49	+0.9
3,055,257	+		GFF2996	0.49	-2.1
3,055,298	+		GFF2996	0.52	-1.5
3,055,316	-		GFF2996	0.53	+1.1
3,055,321	+		GFF2996	0.54	-1.1
3,055,321	+		GFF2996	0.54	-0.2
3,055,325	+		GFF2996	0.54	-0.4
3,055,327	-		GFF2996	0.54	+0.9
3,055,327	-		GFF2996	0.54	+0.0
3,055,331	-		GFF2996	0.55	-0.0
3,055,340	+		GFF2996	0.55	-0.4
3,055,368	+		GFF2996	0.57	-0.7
3,055,417	+		GFF2996	0.61	-1.3
3,055,425	-		GFF2996	0.62	+0.3
3,055,425	-		GFF2996	0.62	-1.6
3,055,451	-		GFF2996	0.64	-1.3
3,055,456	+		GFF2996	0.64	+0.9
3,055,456	+		GFF2996	0.64	+2.0
3,055,456	-		GFF2996	0.64	+1.3
3,055,464	-		GFF2996	0.65	+1.9
3,055,468	+		GFF2996	0.65	-0.5
3,055,468	+		GFF2996	0.65	-0.9
3,055,468	+		GFF2996	0.65	+0.4
3,055,468	+		GFF2996	0.65	+0.0
3,055,476	-		GFF2996	0.66	+0.8
3,055,476	-		GFF2996	0.66	+0.3
3,055,476	-		GFF2996	0.66	-1.3
3,055,476	-		GFF2996	0.66	-0.7
3,055,497	+		GFF2996	0.67	-0.4
3,055,499	+		GFF2996	0.68	-0.8
3,055,499	+		GFF2996	0.68	-1.1
3,055,499	+		GFF2996	0.68	-0.4
3,055,505	-		GFF2996	0.68	-0.3
3,055,558	-		GFF2996	0.72	+0.7
3,055,563	+		GFF2996	0.72	-2.2
3,055,569	+		GFF2996	0.73	+0.3
3,055,571	-		GFF2996	0.73	-0.6
3,055,571	-		GFF2996	0.73	+0.6
3,055,593	-		GFF2996	0.75	-1.9
3,055,617	+		GFF2996	0.77	-1.6
3,055,617	+		GFF2996	0.77	+0.7
3,055,624	+		GFF2996	0.77	+0.2
3,055,624	+		GFF2996	0.77	-0.3
3,055,625	-		GFF2996	0.77	-0.0
3,055,632	-		GFF2996	0.78	-1.1
3,055,643	-		GFF2996	0.79	+1.0
3,055,660	-		GFF2996	0.80	-1.4
3,055,660	-		GFF2996	0.80	+1.5
3,055,667	+		GFF2996	0.80	+1.5
3,055,675	-		GFF2996	0.81	+0.1
3,055,683	-		GFF2996	0.82	+0.2
3,055,691	+		GFF2996	0.82	-1.8
3,055,693	+		GFF2996	0.82	+0.2
3,055,693	+		GFF2996	0.82	-1.3
3,055,701	-		GFF2996	0.83	-0.2
3,055,701	-		GFF2996	0.83	+0.5
3,055,701	-		GFF2996	0.83	-0.0
3,055,711	-		GFF2996	0.84	-1.1
3,055,737	+		GFF2996	0.86	+1.0
3,055,746	-		GFF2996	0.86	+1.2
3,055,751	-		GFF2996	0.87	-0.2
3,055,756	-		GFF2996	0.87	-1.3
3,055,776	-		GFF2996	0.89	+1.2
3,055,776	-		GFF2996	0.89	-1.2
3,055,785	+		GFF2996	0.89	+0.2
3,055,790	+		GFF2996	0.90	-1.2
3,055,790	+		GFF2996	0.90	-1.5
3,055,790	+		GFF2996	0.90	-0.4
3,055,793	-				-0.5
3,055,793	-				-0.9
3,055,793	-				-0.4
3,055,793	-				+0.2
3,055,798	-				-0.9
3,055,798	-				+0.9
3,055,805	+				+0.2
3,055,807	+				+0.5
3,055,815	-				+0.1
3,055,820	+				-0.7
3,055,823	-				+0.3
3,055,823	-				-0.3
3,055,823	-				-1.8
3,055,825	+				+0.7
3,055,829	+				+1.1
3,055,833	-				+0.2
3,055,859	-				+0.1
3,055,862	+				+0.1
3,055,862	+				-1.7
3,055,862	+				-0.2
3,055,862	+				-0.3
3,055,862	+				-1.3
3,055,862	+				-0.3
3,055,862	+				-1.3
3,055,870	-				-1.9
3,055,870	-				+1.1
3,055,870	-				-0.8
3,055,870	-				+0.9
3,055,870	-				-0.3
3,055,870	-				-1.4
3,055,872	-				+0.9
3,055,874	+				+0.1
3,055,906	+				-1.6
3,055,911	+				+0.5
3,055,916	+				+0.5
3,055,924	-				-1.9
3,055,924	-				+1.2
3,055,924	-				-0.4
3,055,953	-				+0.6
3,055,954	+				+1.0
3,055,958	-				-1.5
3,055,963	-				+0.8
3,055,963	-				-0.1
3,055,970	-				-0.8
3,055,980	+				+0.4
3,055,990	+				-0.8
3,055,990	+				-1.9
3,055,990	+				+1.1
3,055,990	+				-0.6
3,055,998	-				+0.5
3,055,998	-				-1.6
3,055,998	-				+0.1
3,055,998	-				+0.3
3,055,998	-				-0.3
3,056,035	+				-0.7
3,056,035	+				+0.4
3,056,043	-				-0.0
3,056,053	+				-0.9
3,056,071	-				-1.3
3,056,085	+				-0.5
3,056,086	+				-1.3
3,056,100	-				-2.0
3,056,128	-				-0.2
3,056,144	+				-1.4
3,056,181	-				-1.4
3,056,198	+				+0.0
3,056,203	+				-0.1
3,056,249	-		GFF2997	0.13	+1.0
3,056,306	-		GFF2997	0.21	-0.1
3,056,306	-		GFF2997	0.21	-0.8
3,056,306	-		GFF2997	0.21	-0.3
3,056,307	+		GFF2997	0.21	-1.5
3,056,315	+		GFF2997	0.22	-0.4
3,056,315	-		GFF2997	0.22	-1.2
3,056,319	-		GFF2997	0.23	-1.6
3,056,325	-		GFF2997	0.23	+0.5
3,056,332	+		GFF2997	0.24	+0.3
3,056,355	+		GFF2997	0.27	-0.2
3,056,379	+		GFF2997	0.30	-0.8
3,056,430	+		GFF2997	0.37	+0.1
3,056,475	+		GFF2997	0.43	-0.3
3,056,475	+		GFF2997	0.43	-1.2
3,056,478	-		GFF2997	0.43	+0.1
3,056,498	+		GFF2997	0.46	-0.1
3,056,519	+		GFF2997	0.49	+0.3
3,056,519	-		GFF2997	0.49	+0.4
3,056,521	+		GFF2997	0.49	+1.5
3,056,523	+		GFF2997	0.49	+0.8
3,056,537	+		GFF2997	0.51	-0.9
3,056,538	+		GFF2997	0.51	+0.9
3,056,546	-		GFF2997	0.52	-0.0
3,056,557	+		GFF2997	0.54	-0.3
3,056,558	+		GFF2997	0.54	+0.6
3,056,563	+		GFF2997	0.54	-1.3
3,056,585	+		GFF2997	0.57	-0.2
3,056,585	+		GFF2997	0.57	-1.6
3,056,590	+		GFF2997	0.58	+1.1
3,056,590	+		GFF2997	0.58	-1.2
3,056,590	+		GFF2997	0.58	-1.1
3,056,590	+		GFF2997	0.58	-0.8
3,056,590	+		GFF2997	0.58	-1.1
3,056,593	-		GFF2997	0.58	-1.5
3,056,593	-		GFF2997	0.58	-0.4
3,056,593	-		GFF2997	0.58	-0.1
3,056,598	-		GFF2997	0.59	+0.8
3,056,598	-		GFF2997	0.59	-1.1
3,056,598	-		GFF2997	0.59	-1.4
3,056,598	-		GFF2997	0.59	+1.4
3,056,603	-		GFF2997	0.60	-1.1
3,056,608	-		GFF2997	0.60	+0.3
3,056,614	+		GFF2997	0.61	-0.4
3,056,634	+		GFF2997	0.64	-0.8
3,056,657	-		GFF2997	0.67	+0.1
3,056,659	+		GFF2997	0.67	-1.3
3,056,659	+		GFF2997	0.67	-1.2
3,056,659	+		GFF2997	0.67	-1.2
3,056,667	-		GFF2997	0.68	-0.9
3,056,672	-		GFF2997	0.68	+0.4
3,056,680	+		GFF2997	0.70	-0.1
3,056,681	+		GFF2997	0.70	+0.1
3,056,739	+		GFF2997	0.77	-0.2
3,056,757	+		GFF2997	0.80	+0.2
3,056,772	+		GFF2997	0.82	+0.2
3,056,778	+		GFF2997	0.82	+0.3
3,056,780	-		GFF2997	0.83	+0.5
3,056,800	-		GFF2997	0.85	-0.8
3,056,806	-		GFF2997	0.86	-1.5
3,056,837	+				-0.5
3,056,840	-				+0.8
3,056,902	+				-1.9
3,056,902	+				+1.3
3,056,905	-				-1.7
3,056,905	-				+0.2
3,056,905	-				-0.7
3,056,907	+				-0.3
3,056,907	+				+0.0
3,056,907	+				+0.3
3,056,907	+				-1.0
3,056,907	+				-0.3
3,056,907	+				-1.2
3,056,907	+				-0.6
3,056,907	+				+0.2
3,056,910	-				+0.0
3,056,910	-				-2.4
3,056,910	-				-1.0
3,056,915	-				+0.4
3,056,915	-				-0.5
3,056,915	-				+0.1
3,056,915	-				+0.6
3,056,915	-				+0.5
3,056,915	-				-0.5
3,056,921	+				-0.1
3,056,921	+				+0.4
3,056,921	+				+0.5
3,056,921	+				-0.0
3,056,921	+				+0.4
3,056,921	+				-0.8
3,056,921	+				-0.2
3,056,921	+				+0.3
3,056,921	+				+1.4
3,056,921	+				-0.2
3,056,921	+				-0.5
3,056,921	+				+0.2
3,056,921	+				-1.9
3,056,921	+				+1.4
3,056,921	+				-0.7
3,056,921	+				+0.1
3,056,921	+				-0.2
3,056,921	+				-0.2
3,056,921	+				+0.1
3,056,921	+				-1.9
3,056,921	+				-0.6
3,056,921	+				-1.6
3,056,921	+				+0.3
3,056,921	+				-1.8
3,056,921	+				+0.7
3,056,921	+				-0.4
3,056,921	+				+0.0
3,056,921	+				-1.1
3,056,921	+				+0.1
3,056,921	+				-0.5
3,056,921	+				+0.7
3,056,921	+				-0.0
3,056,921	+				-1.3
3,056,922	+				-0.2
3,056,925	-				+0.1
3,056,929	-				-0.7
3,056,929	-				+1.1
3,056,929	-				+0.8
3,056,929	-				-0.7
3,056,929	-				+0.1
3,056,929	-				-0.9
3,056,929	-				-1.4
3,056,929	-				-0.9
3,056,929	-				-0.3
3,056,929	-				-1.4
3,056,929	-				-2.3
3,056,929	-				-0.9
3,056,929	-				+1.1
3,056,929	-				-0.1
3,056,929	-				-0.1
3,056,929	-				-0.1
3,056,929	-				+0.5
3,056,929	-				-0.9
3,056,929	-				+0.1
3,056,929	-				-0.2
3,056,929	-				-0.6
3,056,929	-				-0.3
3,056,929	-				-0.2
3,056,929	-				-0.4
3,056,929	-				-0.2
3,056,929	-				+0.8
3,056,933	+				+0.2
3,056,938	+				-0.2
3,056,938	+				+1.5
3,056,941	-				-0.9
3,056,941	-				-2.0
3,056,943	+				-0.4
3,056,951	-				+0.1
3,056,951	-				-0.5
3,056,951	-				-0.4
3,056,954	+				+0.5
3,056,954	+				+0.3
3,056,975	+				+1.4
3,057,020	+				+0.1
3,057,035	+				+0.8
3,057,035	+				-1.4
3,057,057	+				+0.2
3,057,065	-				-1.1
3,057,065	-				+0.3
3,057,065	-				+0.9
3,057,085	+				-2.3
3,057,094	+				-0.1
3,057,100	+				+0.5
3,057,102	-				+0.0
3,057,103	-				-1.6
3,057,118	-				+0.3
3,057,160	+				-1.8
3,057,168	-				+0.8
3,057,168	-				-1.3
3,057,168	-				-0.1
3,057,168	-				-0.0
3,057,168	-				-0.4
3,057,215	-				+0.1
3,057,232	+				-0.2
3,057,278	+		GFF2998	0.13	-1.7
3,057,309	+		GFF2998	0.17	+0.1
3,057,309	+		GFF2998	0.17	+0.6
3,057,317	-		GFF2998	0.17	+0.7
3,057,318	-		GFF2998	0.17	-0.1
3,057,318	-		GFF2998	0.17	-2.3
3,057,318	-		GFF2998	0.17	+0.2
3,057,322	+		GFF2998	0.18	-0.3
3,057,323	-		GFF2998	0.18	-0.4
3,057,323	-		GFF2998	0.18	+0.6
3,057,325	+		GFF2998	0.18	-0.8
3,057,358	-		GFF2998	0.21	+1.5
3,057,374	+		GFF2998	0.23	+1.5
3,057,382	-		GFF2998	0.24	-0.3
3,057,382	-		GFF2998	0.24	-1.5
3,057,382	-		GFF2998	0.24	+0.3
3,057,382	-		GFF2998	0.24	-0.9
3,057,397	-		GFF2998	0.25	-1.9
3,057,407	+		GFF2998	0.26	-0.8
3,057,407	+		GFF2998	0.26	-1.1
3,057,410	-		GFF2998	0.27	-0.7
3,057,417	+		GFF2998	0.27	+0.3
3,057,420	-		GFF2998	0.28	+0.3
3,057,421	-		GFF2998	0.28	+0.6
3,057,421	-		GFF2998	0.28	-0.1
3,057,421	-		GFF2998	0.28	+0.0
3,057,429	-		GFF2998	0.29	+0.8
3,057,441	-		GFF2998	0.30	+0.1
3,057,441	-		GFF2998	0.30	+0.2
3,057,441	-		GFF2998	0.30	-0.7
3,057,441	-		GFF2998	0.30	-0.8
3,057,441	-		GFF2998	0.30	+0.8
3,057,511	+		GFF2998	0.37	-1.7
3,057,511	+		GFF2998	0.37	+0.3
3,057,512	+		GFF2998	0.37	-0.7
3,057,519	-		GFF2998	0.38	+0.0
3,057,520	-		GFF2998	0.38	+0.3
3,057,520	-		GFF2998	0.38	-0.8
3,057,520	-		GFF2998	0.38	+0.9
3,057,528	+		GFF2998	0.39	+0.2
3,057,542	+		GFF2998	0.40	-0.2
3,057,567	+		GFF2998	0.42	-1.1
3,057,567	+		GFF2998	0.42	-1.2
3,057,571	-		GFF2998	0.43	+0.9
3,057,572	-		GFF2998	0.43	+1.0
3,057,573	+		GFF2998	0.43	-1.2
3,057,581	-		GFF2998	0.44	+1.5
3,057,582	-		GFF2998	0.44	-0.3
3,057,590	+		GFF2998	0.45	-0.9
3,057,612	+		GFF2998	0.47	-1.3
3,057,620	-		GFF2998	0.48	-1.6
3,057,646	-		GFF2998	0.50	+0.2
3,057,672	+		GFF2998	0.53	-0.1
3,057,685	-		GFF2998	0.54	-1.3
3,057,707	-		GFF2998	0.57	+0.5
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