Strain Fitness in Sphingobium sp. HT1-2 around GFF2984

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,036,723	+		GFF2983	0.42	-0.6
3,036,731	+		GFF2983	0.43	-1.0
3,036,762	+		GFF2983	0.45	-1.4
3,036,762	+		GFF2983	0.45	-0.4
3,036,770	-		GFF2983	0.45	-0.6
3,036,781	+		GFF2983	0.46	-0.1
3,036,800	+		GFF2983	0.47	-1.0
3,036,800	+		GFF2983	0.47	+0.1
3,036,800	+		GFF2983	0.47	+0.4
3,036,800	+		GFF2983	0.47	-0.6
3,036,800	+		GFF2983	0.47	-0.3
3,036,800	+		GFF2983	0.47	-0.7
3,036,800	+		GFF2983	0.47	+0.2
3,036,800	+		GFF2983	0.47	-0.5
3,036,800	+		GFF2983	0.47	+0.8
3,036,800	+		GFF2983	0.47	-1.4
3,036,800	+		GFF2983	0.47	-0.7
3,036,800	+		GFF2983	0.47	-0.4
3,036,800	+		GFF2983	0.47	+0.1
3,036,808	-		GFF2983	0.47	+0.3
3,036,808	-		GFF2983	0.47	-1.2
3,036,808	-		GFF2983	0.47	-0.1
3,036,808	-		GFF2983	0.47	-1.0
3,036,808	-		GFF2983	0.47	+0.1
3,036,808	-		GFF2983	0.47	+1.9
3,036,808	-		GFF2983	0.47	+0.6
3,036,808	-		GFF2983	0.47	+0.0
3,036,808	-		GFF2983	0.47	+1.2
3,036,808	-		GFF2983	0.47	+0.8
3,036,810	+		GFF2983	0.47	-0.1
3,036,810	+		GFF2983	0.47	+1.0
3,036,810	+		GFF2983	0.47	-0.3
3,036,811	+		GFF2983	0.48	+0.0
3,036,811	+		GFF2983	0.48	-0.2
3,036,811	+		GFF2983	0.48	-2.0
3,036,818	-		GFF2983	0.48	-1.3
3,036,818	-		GFF2983	0.48	-0.6
3,036,818	-		GFF2983	0.48	-0.3
3,036,818	-		GFF2983	0.48	+1.0
3,036,818	-		GFF2983	0.48	+0.5
3,036,819	-		GFF2983	0.48	+0.1
3,036,827	+		GFF2983	0.48	+0.1
3,036,837	-		GFF2983	0.49	-0.6
3,036,844	+		GFF2983	0.49	-0.2
3,036,849	+		GFF2983	0.50	-1.5
3,036,849	+		GFF2983	0.50	+1.3
3,036,849	+		GFF2983	0.50	-0.0
3,036,849	+		GFF2983	0.50	-0.4
3,036,849	+		GFF2983	0.50	+0.6
3,036,857	-		GFF2983	0.50	-0.0
3,036,857	-		GFF2983	0.50	-0.4
3,036,857	-		GFF2983	0.50	-0.3
3,036,911	+		GFF2983	0.53	-0.8
3,036,919	-		GFF2983	0.54	+0.0
3,036,929	+		GFF2983	0.54	-0.6
3,036,937	-		GFF2983	0.55	+0.5
3,036,972	+		GFF2983	0.57	-1.7
3,036,972	+		GFF2983	0.57	+0.2
3,036,980	-		GFF2983	0.57	+0.9
3,036,980	-		GFF2983	0.57	+0.2
3,036,980	-		GFF2983	0.57	-0.2
3,036,980	-		GFF2983	0.57	+0.0
3,036,980	-		GFF2983	0.57	-1.0
3,037,001	+		GFF2983	0.59	-0.0
3,037,001	+		GFF2983	0.59	+0.2
3,037,011	+		GFF2983	0.59	-0.8
3,037,011	+		GFF2983	0.59	+0.3
3,037,011	+		GFF2983	0.59	-0.6
3,037,011	+		GFF2983	0.59	+1.3
3,037,011	+		GFF2983	0.59	-0.2
3,037,011	+		GFF2983	0.59	-0.8
3,037,011	+		GFF2983	0.59	-1.6
3,037,011	+		GFF2983	0.59	-1.4
3,037,019	-		GFF2983	0.60	+0.1
3,037,019	-		GFF2983	0.60	+0.4
3,037,019	-		GFF2983	0.60	+0.5
3,037,019	-		GFF2983	0.60	+1.2
3,037,019	-		GFF2983	0.60	-0.8
3,037,019	-		GFF2983	0.60	+0.0
3,037,019	-		GFF2983	0.60	-1.4
3,037,019	-		GFF2983	0.60	-0.1
3,037,019	-		GFF2983	0.60	+0.9
3,037,057	+		GFF2983	0.62	+1.4
3,037,057	+		GFF2983	0.62	-0.9
3,037,065	+		GFF2983	0.62	+0.2
3,037,065	-		GFF2983	0.62	-0.0
3,037,070	+		GFF2983	0.63	-1.0
3,037,073	-		GFF2983	0.63	-0.7
3,037,083	-		GFF2983	0.63	-0.3
3,037,085	+		GFF2983	0.64	+0.7
3,037,106	-		GFF2983	0.65	+0.6
3,037,123	+		GFF2983	0.66	-0.1
3,037,128	-		GFF2983	0.66	+0.9
3,037,146	+		GFF2983	0.67	-0.3
3,037,154	-		GFF2983	0.68	+0.3
3,037,155	-		GFF2983	0.68	+0.5
3,037,192	+		GFF2983	0.70	+0.5
3,037,219	-		GFF2983	0.71	-0.8
3,037,223	-		GFF2983	0.72	-0.8
3,037,225	+		GFF2983	0.72	+1.1
3,037,249	+		GFF2983	0.73	+2.2
3,037,255	-		GFF2983	0.74	-0.9
3,037,261	+		GFF2983	0.74	+0.4
3,037,268	+		GFF2983	0.74	+0.4
3,037,291	+		GFF2983	0.76	-1.1
3,037,299	-		GFF2983	0.76	+1.7
3,037,330	+		GFF2983	0.78	-1.2
3,037,333	-		GFF2983	0.78	-0.6
3,037,338	-		GFF2983	0.78	-0.1
3,037,347	+		GFF2983	0.79	-0.7
3,037,349	+		GFF2983	0.79	-1.3
3,037,355	-		GFF2983	0.79	-1.3
3,037,372	-		GFF2983	0.80	-1.8
3,037,377	+		GFF2983	0.81	-0.4
3,037,386	-		GFF2983	0.81	-0.3
3,037,392	-		GFF2983	0.82	+1.3
3,037,392	-		GFF2983	0.82	+2.5
3,037,392	-		GFF2983	0.82	+1.4
3,037,399	+		GFF2983	0.82	+0.7
3,037,411	+		GFF2983	0.83	-1.6
3,037,474	+		GFF2983	0.86	-0.3
3,037,566	+				-1.3
3,037,569	+				-0.3
3,037,584	+				-1.0
3,037,584	+				-0.5
3,037,585	+				-0.2
3,037,585	+				-0.5
3,037,585	+				-0.8
3,037,585	+				+0.2
3,037,585	+				+0.8
3,037,585	-				+0.0
3,037,592	-				+1.9
3,037,594	+				-0.6
3,037,602	+				+0.3
3,037,607	+				-1.6
3,037,617	+				+0.9
3,037,617	+				-0.6
3,037,617	+				-1.5
3,037,625	-				+0.3
3,037,636	+				+0.6
3,037,641	+				+0.5
3,037,646	+				-0.8
3,037,649	-				-0.7
3,037,652	+				-0.5
3,037,652	+				+0.7
3,037,660	-				+0.3
3,037,660	-				+0.6
3,037,660	-				-0.5
3,037,685	+				+1.1
3,037,728	-				+1.9
3,037,735	-				-0.1
3,037,763	-				-0.1
3,037,773	+				+1.5
3,037,824	-				+1.3
3,037,829	+				-1.1
3,037,856	+				+0.7
3,037,856	+				-0.3
3,037,871	-				-1.1
3,037,872	-				-0.9
3,037,888	+				-1.4
3,037,896	-				-2.4
3,037,901	-				+0.4
3,037,901	-				-0.5
3,037,916	+				+0.3
3,037,918	-				+0.7
3,037,929	+		GFF2984	0.10	+0.2
3,037,950	-		GFF2984	0.11	+0.7
3,037,953	+		GFF2984	0.12	-1.6
3,037,995	+		GFF2984	0.14	+0.6
3,038,024	+		GFF2984	0.15	+2.1
3,038,054	-		GFF2984	0.16	+0.7
3,038,105	+		GFF2984	0.19	+0.2
3,038,110	+		GFF2984	0.19	+0.5
3,038,115	+		GFF2984	0.19	-2.3
3,038,115	+		GFF2984	0.19	-0.7
3,038,115	+		GFF2984	0.19	+0.9
3,038,123	-		GFF2984	0.20	+1.5
3,038,123	-		GFF2984	0.20	+0.9
3,038,123	-		GFF2984	0.20	-0.1
3,038,137	-		GFF2984	0.20	+0.2
3,038,232	+		GFF2984	0.25	-0.4
3,038,305	-		GFF2984	0.29	-0.3
3,038,315	-		GFF2984	0.29	+0.2
3,038,324	+		GFF2984	0.30	-1.3
3,038,334	+		GFF2984	0.30	-0.2
3,038,334	+		GFF2984	0.30	-1.0
3,038,334	+		GFF2984	0.30	-0.3
3,038,334	+		GFF2984	0.30	+0.9
3,038,334	+		GFF2984	0.30	+0.1
3,038,334	+		GFF2984	0.30	+0.0
3,038,334	+		GFF2984	0.30	-0.1
3,038,334	+		GFF2984	0.30	+0.0
3,038,334	+		GFF2984	0.30	+1.1
3,038,334	+		GFF2984	0.30	+0.4
3,038,334	+		GFF2984	0.30	+1.2
3,038,339	+		GFF2984	0.30	-1.2
3,038,342	+		GFF2984	0.31	+0.7
3,038,342	-		GFF2984	0.31	-0.3
3,038,342	-		GFF2984	0.31	-0.0
3,038,342	-		GFF2984	0.31	-1.4
3,038,342	-		GFF2984	0.31	-1.3
3,038,342	-		GFF2984	0.31	-1.8
3,038,342	-		GFF2984	0.31	-0.3
3,038,350	-		GFF2984	0.31	+0.7
3,038,375	+		GFF2984	0.32	-0.3
3,038,375	+		GFF2984	0.32	+1.4
3,038,375	+		GFF2984	0.32	+2.7
3,038,375	+		GFF2984	0.32	+1.0
3,038,379	+		GFF2984	0.32	-2.0
3,038,381	+		GFF2984	0.32	+0.7
3,038,381	+		GFF2984	0.32	-0.2
3,038,382	-		GFF2984	0.32	+0.2
3,038,383	-		GFF2984	0.33	-1.3
3,038,383	-		GFF2984	0.33	+0.1
3,038,393	-		GFF2984	0.33	+0.5
3,038,409	-		GFF2984	0.34	-0.6
3,038,439	-		GFF2984	0.35	+0.6
3,038,490	+		GFF2984	0.38	+1.8
3,038,496	-		GFF2984	0.38	-0.4
3,038,498	+		GFF2984	0.38	+0.6
3,038,498	+		GFF2984	0.38	+1.4
3,038,498	+		GFF2984	0.38	-1.3
3,038,502	+		GFF2984	0.38	-2.1
3,038,505	-		GFF2984	0.38	+0.4
3,038,506	-		GFF2984	0.39	+0.5
3,038,506	-		GFF2984	0.39	-0.7
3,038,506	-		GFF2984	0.39	-0.6
3,038,506	-		GFF2984	0.39	-0.4
3,038,567	+		GFF2984	0.41	-0.0
3,038,575	+		GFF2984	0.42	-1.4
3,038,634	+		GFF2984	0.45	-0.0
3,038,642	-		GFF2984	0.45	+1.5
3,038,656	-		GFF2984	0.46	+0.7
3,038,660	-		GFF2984	0.46	-1.8
3,038,667	-		GFF2984	0.46	-0.6
3,038,750	-		GFF2984	0.50	-0.9
3,038,755	+		GFF2984	0.51	+0.0
3,038,755	+		GFF2984	0.51	-0.3
3,038,755	+		GFF2984	0.51	+0.7
3,038,763	-		GFF2984	0.51	-0.3
3,038,763	-		GFF2984	0.51	+0.2
3,038,763	-		GFF2984	0.51	+0.9
3,038,763	-		GFF2984	0.51	-0.3
3,038,784	-		GFF2984	0.52	+0.6
3,038,791	+		GFF2984	0.52	-1.4
3,038,791	+		GFF2984	0.52	+0.0
3,038,791	+		GFF2984	0.52	-0.5
3,038,791	+		GFF2984	0.52	-1.1
3,038,791	+		GFF2984	0.52	-2.1
3,038,791	+		GFF2984	0.52	-0.3
3,038,792	+		GFF2984	0.52	+1.4
3,038,792	+		GFF2984	0.52	+1.6
3,038,799	-		GFF2984	0.53	+0.9
3,038,799	-		GFF2984	0.53	+0.9
3,038,799	-		GFF2984	0.53	-1.4
3,038,799	-		GFF2984	0.53	+0.2
3,038,799	-		GFF2984	0.53	+0.6
3,038,800	-		GFF2984	0.53	-0.5
3,038,806	+		GFF2984	0.53	+0.5
3,038,815	+		GFF2984	0.54	-1.7
3,038,823	-		GFF2984	0.54	-1.8
3,038,856	-		GFF2984	0.56	+2.0
3,038,890	+		GFF2984	0.57	+0.7
3,038,890	+		GFF2984	0.57	+0.2
3,038,898	-		GFF2984	0.58	+0.7
3,038,903	-		GFF2984	0.58	-1.1
3,038,927	+		GFF2984	0.59	-0.1
3,038,927	+		GFF2984	0.59	-0.0
3,038,947	-		GFF2984	0.60	-0.5
3,038,959	+		GFF2984	0.61	+0.0
3,038,962	-		GFF2984	0.61	-0.1
3,039,015	+		GFF2984	0.63	+1.5
3,039,015	+		GFF2984	0.63	-1.1
3,039,046	-		GFF2984	0.65	-0.3
3,039,068	-		GFF2984	0.66	-0.4
3,039,084	-		GFF2984	0.67	-1.0
3,039,114	-		GFF2984	0.68	+0.2
3,039,116	+		GFF2984	0.68	+0.4
3,039,118	+		GFF2984	0.68	-1.2
3,039,126	-		GFF2984	0.69	+0.5
3,039,126	-		GFF2984	0.69	-2.1
3,039,126	-		GFF2984	0.69	+1.3
3,039,126	-		GFF2984	0.69	-0.9
3,039,126	-		GFF2984	0.69	-1.3
3,039,128	-		GFF2984	0.69	+0.5
3,039,200	+		GFF2984	0.72	-2.5
3,039,210	-		GFF2984	0.73	+0.4
3,039,212	+		GFF2984	0.73	-0.5
3,039,217	+		GFF2984	0.73	-0.2
3,039,225	-		GFF2984	0.74	+0.2
3,039,232	+		GFF2984	0.74	-0.7
3,039,238	-		GFF2984	0.74	-0.2
3,039,240	-		GFF2984	0.74	+0.3
3,039,284	+		GFF2984	0.76	-0.2
3,039,284	+		GFF2984	0.76	-0.1
3,039,289	+		GFF2984	0.77	+0.1
3,039,289	+		GFF2984	0.77	-0.6
3,039,308	-		GFF2984	0.78	+0.5
3,039,316	+		GFF2984	0.78	-0.7
3,039,364	+		GFF2984	0.80	+1.1
3,039,376	+		GFF2984	0.81	+0.0
3,039,377	-		GFF2984	0.81	-0.4
3,039,398	-		GFF2984	0.82	-0.0
3,039,408	+		GFF2984	0.83	-0.1
3,039,416	-		GFF2984	0.83	-2.8
3,039,417	+		GFF2984	0.83	-2.4
3,039,439	+		GFF2984	0.84	-0.5
3,039,439	+		GFF2984	0.84	-1.8
3,039,446	-		GFF2984	0.84	+0.1
3,039,447	-		GFF2984	0.84	+1.3
3,039,458	+		GFF2984	0.85	-1.0
3,039,458	+		GFF2984	0.85	-0.8
3,039,500	-		GFF2984	0.87	-2.0
3,039,512	+		GFF2984	0.88	-0.1
3,039,512	+		GFF2984	0.88	-0.1
3,039,512	+		GFF2984	0.88	+1.2
3,039,520	-		GFF2984	0.88	-2.3
3,039,520	-		GFF2984	0.88	+2.1
3,039,520	-		GFF2984	0.88	-0.4
3,039,520	-		GFF2984	0.88	-0.7
3,039,528	+		GFF2984	0.88	-0.3
3,039,541	+		GFF2984	0.89	-1.0
3,039,549	-		GFF2984	0.89	-0.7
3,039,560	+		GFF2984	0.90	+1.5
3,039,602	-				+0.2
3,039,605	+				-1.9
3,039,613	-				+1.4
3,039,645	+				+0.1
3,039,650	+				+0.4
3,039,664	-				+0.4
3,039,682	+				-1.2
3,039,691	-				-0.1
3,039,697	+				+0.2
3,039,701	-				+0.2
3,039,719	-				-0.5
3,039,727	-				-0.2
3,039,734	+				-0.1
3,039,742	-				-2.1
3,039,757	-				-2.3
3,039,759	+				-0.4
3,039,768	-				+1.1
3,039,778	-				+0.1
3,039,807	+				-0.5
3,039,808	+				-1.1
3,039,808	+				-1.0
3,039,813	+				+0.5
3,039,813	+				-3.4
3,039,813	+				+0.8
3,039,814	-				+2.1
3,039,814	-				-0.1
3,039,818	+				-0.0
3,039,818	+				-0.6
3,039,820	+				-0.5
3,039,821	-				+0.7
3,039,828	-				+0.2
3,039,830	+				+0.6
3,039,830	+				+0.9
3,039,830	+				-0.0
3,039,838	-				+2.2
3,039,849	+		GFF2985	0.12	+0.6
3,039,856	-		GFF2985	0.13	-1.0
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