Strain Fitness in Sphingobium sp. HT1-2 around GFF2978

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,032,236	-		GFF2977	0.69	+1.5
3,032,238	+		GFF2977	0.69	-1.5
3,032,249	+		GFF2977	0.70	+0.3
3,032,249	+		GFF2977	0.70	+1.2
3,032,249	+		GFF2977	0.70	+0.3
3,032,249	+		GFF2977	0.70	-0.8
3,032,249	+		GFF2977	0.70	-0.1
3,032,249	+		GFF2977	0.70	+1.1
3,032,249	+		GFF2977	0.70	+0.3
3,032,249	+		GFF2977	0.70	-0.0
3,032,257	-		GFF2977	0.70	+0.8
3,032,257	-		GFF2977	0.70	+0.3
3,032,257	-		GFF2977	0.70	+0.8
3,032,257	-		GFF2977	0.70	-1.2
3,032,264	+		GFF2977	0.70	-1.0
3,032,298	+		GFF2977	0.71	+0.0
3,032,298	+		GFF2977	0.71	+1.3
3,032,298	+		GFF2977	0.71	-0.4
3,032,298	+		GFF2977	0.71	-0.5
3,032,298	+		GFF2977	0.71	-1.1
3,032,303	+		GFF2977	0.71	-1.2
3,032,303	+		GFF2977	0.71	+1.5
3,032,303	+		GFF2977	0.71	-2.3
3,032,306	-		GFF2977	0.71	+0.6
3,032,311	-		GFF2977	0.72	-2.6
3,032,311	-		GFF2977	0.72	-1.8
3,032,319	+		GFF2977	0.72	+0.5
3,032,327	-		GFF2977	0.72	-0.2
3,032,332	+		GFF2977	0.72	-0.8
3,032,332	+		GFF2977	0.72	-0.7
3,032,332	+		GFF2977	0.72	-1.2
3,032,332	+		GFF2977	0.72	+0.6
3,032,332	+		GFF2977	0.72	+1.4
3,032,332	+		GFF2977	0.72	-1.4
3,032,332	+		GFF2977	0.72	+1.3
3,032,332	+		GFF2977	0.72	+0.3
3,032,340	-		GFF2977	0.73	-1.9
3,032,340	-		GFF2977	0.73	-2.1
3,032,340	-		GFF2977	0.73	-0.6
3,032,340	-		GFF2977	0.73	-2.6
3,032,361	-		GFF2977	0.73	-0.6
3,032,361	-		GFF2977	0.73	+0.1
3,032,367	+		GFF2977	0.73	-0.2
3,032,367	+		GFF2977	0.73	+0.1
3,032,377	+		GFF2977	0.74	+0.6
3,032,385	-		GFF2977	0.74	-1.2
3,032,393	-		GFF2977	0.74	-0.0
3,032,395	-		GFF2977	0.74	-0.7
3,032,395	-		GFF2977	0.74	-1.5
3,032,407	+		GFF2977	0.75	+0.2
3,032,414	+		GFF2977	0.75	-2.0
3,032,414	+		GFF2977	0.75	+1.1
3,032,414	+		GFF2977	0.75	-0.9
3,032,414	+		GFF2977	0.75	-0.1
3,032,422	-		GFF2977	0.75	-1.8
3,032,422	-		GFF2977	0.75	+0.7
3,032,422	-		GFF2977	0.75	+0.3
3,032,426	+		GFF2977	0.75	-0.2
3,032,432	-		GFF2977	0.75	+1.6
3,032,445	+		GFF2977	0.76	+0.5
3,032,445	+		GFF2977	0.76	+1.1
3,032,453	-		GFF2977	0.76	-0.4
3,032,453	-		GFF2977	0.76	-0.3
3,032,459	+		GFF2977	0.76	-0.1
3,032,459	+		GFF2977	0.76	+0.1
3,032,467	-		GFF2977	0.77	+1.5
3,032,468	-		GFF2977	0.77	-1.1
3,032,480	+		GFF2977	0.77	+1.1
3,032,499	+		GFF2977	0.78	-0.8
3,032,575	+		GFF2977	0.80	+0.2
3,032,578	+		GFF2977	0.80	-1.5
3,032,622	-		GFF2977	0.81	-1.7
3,032,634	-		GFF2977	0.82	-0.5
3,032,640	-		GFF2977	0.82	-1.4
3,032,648	+		GFF2977	0.82	+0.9
3,032,651	-		GFF2977	0.82	-0.7
3,032,653	+		GFF2977	0.82	-0.3
3,032,656	-		GFF2977	0.82	-2.0
3,032,676	+		GFF2977	0.83	-2.5
3,032,688	+		GFF2977	0.83	-0.9
3,032,721	+		GFF2977	0.84	-1.2
3,032,730	+		GFF2977	0.85	-1.8
3,032,730	+		GFF2977	0.85	-1.0
3,032,730	+		GFF2977	0.85	-0.3
3,032,730	+		GFF2977	0.85	-1.1
3,032,738	-		GFF2977	0.85	-0.3
3,032,738	-		GFF2977	0.85	-0.8
3,032,763	-		GFF2977	0.86	+1.3
3,032,784	+		GFF2977	0.86	-0.9
3,032,785	-		GFF2977	0.86	+0.2
3,032,792	-		GFF2977	0.87	+0.2
3,032,792	-		GFF2977	0.87	+1.3
3,032,794	+		GFF2977	0.87	+0.9
3,032,794	+		GFF2977	0.87	-0.5
3,032,794	+		GFF2977	0.87	-0.5
3,032,794	+		GFF2977	0.87	-1.2
3,032,794	+		GFF2977	0.87	+0.6
3,032,794	+		GFF2977	0.87	-0.1
3,032,794	-		GFF2977	0.87	+0.3
3,032,802	-		GFF2977	0.87	-1.5
3,032,802	-		GFF2977	0.87	+0.6
3,032,818	+		GFF2977	0.88	-1.1
3,032,818	+		GFF2977	0.88	+0.6
3,032,818	+		GFF2977	0.88	+0.3
3,032,818	+		GFF2977	0.88	+1.8
3,032,826	-		GFF2977	0.88	-1.3
3,032,826	-		GFF2977	0.88	-1.5
3,032,826	-		GFF2977	0.88	-0.1
3,032,826	-		GFF2977	0.88	-1.4
3,032,826	-		GFF2977	0.88	-0.2
3,032,911	-				+0.6
3,032,931	+				-0.6
3,032,947	+				+1.4
3,032,952	+				-1.7
3,032,952	+				-0.5
3,032,952	+				+0.2
3,032,952	+				+0.2
3,032,952	+				+1.5
3,032,952	+				+0.5
3,032,952	+				+0.4
3,032,952	+				-0.5
3,032,952	+				-1.3
3,032,952	+				-0.1
3,032,952	+				+1.4
3,032,952	+				-1.1
3,032,952	+				-0.5
3,032,952	+				+0.8
3,032,952	+				+1.9
3,032,952	+				-0.3
3,032,952	+				-0.1
3,032,952	+				-0.3
3,032,952	+				-0.2
3,032,952	+				-0.2
3,032,952	+				-1.0
3,032,952	+				-0.2
3,032,952	+				+1.9
3,032,952	+				+0.2
3,032,952	+				-0.4
3,032,952	+				+0.0
3,032,952	+				+0.8
3,032,960	-				-0.6
3,032,960	-				-0.1
3,032,960	-				-0.5
3,032,960	-				-1.7
3,032,960	-				+0.6
3,032,960	-				-1.2
3,032,960	-				+0.9
3,032,960	-				+0.7
3,032,960	-				-0.6
3,032,960	-				-1.0
3,032,960	-				+1.1
3,032,960	-				+0.4
3,032,960	-				+0.5
3,032,960	-				-0.4
3,032,960	-				+0.0
3,032,960	-				+0.5
3,032,960	-				-0.1
3,032,960	-				+0.9
3,032,960	-				-1.6
3,032,960	-				+0.7
3,032,960	-				+0.4
3,032,960	-				-0.2
3,032,981	-				-1.1
3,032,981	-				-1.1
3,032,994	-				+0.8
3,033,018	+				+0.8
3,033,037	+				-0.9
3,033,037	+				-1.4
3,033,037	+				-1.7
3,033,037	+				-1.9
3,033,037	+				-0.3
3,033,042	+				+0.6
3,033,042	+				+0.5
3,033,042	+				+0.7
3,033,045	-				-1.3
3,033,045	-				-1.5
3,033,045	-				+0.3
3,033,045	-				+1.1
3,033,045	-				-0.0
3,033,045	-				-1.9
3,033,045	-				+0.7
3,033,045	-				-0.8
3,033,045	-				+1.2
3,033,045	-				-1.0
3,033,045	-				+1.5
3,033,045	-				-0.2
3,033,045	-				-1.0
3,033,059	+				+0.1
3,033,066	+				+0.1
3,033,081	-				-0.3
3,033,096	+				-0.6
3,033,097	+				+1.6
3,033,097	+				-0.7
3,033,097	+				+0.1
3,033,104	-				-0.3
3,033,115	-				+0.8
3,033,116	-				-0.6
3,033,121	+				+0.1
3,033,122	+				-0.4
3,033,122	-				-1.1
3,033,124	+				-0.1
3,033,129	+				-0.9
3,033,129	+				+0.9
3,033,129	+				+0.9
3,033,129	+				-1.5
3,033,137	-				+0.1
3,033,137	-				-0.1
3,033,137	-				-1.7
3,033,137	-				+0.8
3,033,137	-				-0.1
3,033,144	-				-1.7
3,033,144	-				-0.3
3,033,154	-				+0.0
3,033,180	-				+0.2
3,033,197	+				+0.9
3,033,203	-				-0.1
3,033,248	-				+0.5
3,033,300	-				-0.6
3,033,300	-				+0.7
3,033,303	-				-0.4
3,033,331	-				-0.0
3,033,332	+				+0.2
3,033,337	-				-0.5
3,033,351	+				-1.3
3,033,383	+		GFF2978	0.11	+1.5
3,033,399	+		GFF2978	0.12	-0.1
3,033,402	-		GFF2978	0.12	+0.3
3,033,407	-		GFF2978	0.13	-1.8
3,033,424	+		GFF2978	0.14	+0.7
3,033,424	+		GFF2978	0.14	+0.2
3,033,424	+		GFF2978	0.14	+0.9
3,033,424	+		GFF2978	0.14	+0.6
3,033,429	+		GFF2978	0.14	+2.1
3,033,432	-		GFF2978	0.15	-1.2
3,033,432	-		GFF2978	0.15	-1.3
3,033,432	-		GFF2978	0.15	-0.1
3,033,432	-		GFF2978	0.15	+1.2
3,033,442	+		GFF2978	0.15	-1.2
3,033,449	+		GFF2978	0.16	+0.4
3,033,450	-		GFF2978	0.16	-2.7
3,033,450	-		GFF2978	0.16	+0.7
3,033,450	-		GFF2978	0.16	-0.9
3,033,450	-		GFF2978	0.16	-0.3
3,033,450	-		GFF2978	0.16	-0.6
3,033,455	-		GFF2978	0.16	-0.4
3,033,457	-		GFF2978	0.16	-1.1
3,033,496	+		GFF2978	0.19	+1.3
3,033,496	+		GFF2978	0.19	-0.1
3,033,504	-		GFF2978	0.20	+1.7
3,033,510	+		GFF2978	0.20	-0.9
3,033,518	-		GFF2978	0.21	-1.2
3,033,526	-		GFF2978	0.21	+0.4
3,033,554	-		GFF2978	0.23	-0.0
3,033,560	-		GFF2978	0.24	+1.2
3,033,571	+		GFF2978	0.24	-1.9
3,033,572	+		GFF2978	0.25	-1.1
3,033,572	+		GFF2978	0.25	-0.2
3,033,572	+		GFF2978	0.25	-1.0
3,033,573	+		GFF2978	0.25	+0.2
3,033,573	+		GFF2978	0.25	+0.3
3,033,579	-		GFF2978	0.25	+0.1
3,033,579	-		GFF2978	0.25	-0.6
3,033,579	-		GFF2978	0.25	+1.1
3,033,579	-		GFF2978	0.25	+0.6
3,033,579	-		GFF2978	0.25	-0.3
3,033,580	-		GFF2978	0.25	+1.6
3,033,611	+		GFF2978	0.27	-2.6
3,033,611	+		GFF2978	0.27	+1.7
3,033,615	+		GFF2978	0.28	-1.6
3,033,620	+		GFF2978	0.28	+0.7
3,033,623	-		GFF2978	0.28	-1.5
3,033,628	-		GFF2978	0.29	+0.6
3,033,628	-		GFF2978	0.29	-0.4
3,033,633	-		GFF2978	0.29	-1.6
3,033,664	+		GFF2978	0.31	-0.4
3,033,667	-		GFF2978	0.31	-0.3
3,033,669	+		GFF2978	0.31	+0.9
3,033,672	-		GFF2978	0.32	+0.3
3,033,677	-		GFF2978	0.32	-0.3
3,033,701	+		GFF2978	0.34	+0.2
3,033,701	+		GFF2978	0.34	-0.8
3,033,701	+		GFF2978	0.34	+0.1
3,033,701	+		GFF2978	0.34	-0.7
3,033,701	+		GFF2978	0.34	-1.7
3,033,709	-		GFF2978	0.34	+0.2
3,033,721	+		GFF2978	0.35	+0.5
3,033,741	+		GFF2978	0.37	-0.1
3,033,742	-		GFF2978	0.37	-0.1
3,033,749	+		GFF2978	0.37	+0.8
3,033,757	-		GFF2978	0.38	-0.1
3,033,757	-		GFF2978	0.38	-0.2
3,033,761	+		GFF2978	0.38	-0.1
3,033,779	+		GFF2978	0.39	-0.4
3,033,807	+		GFF2978	0.41	+0.3
3,033,807	+		GFF2978	0.41	+0.3
3,033,847	-		GFF2978	0.44	-1.9
3,033,850	+		GFF2978	0.44	-1.9
3,033,850	+		GFF2978	0.44	-0.0
3,033,855	+		GFF2978	0.45	-0.0
3,033,858	-		GFF2978	0.45	+0.4
3,033,873	+		GFF2978	0.46	-2.3
3,033,878	+		GFF2978	0.46	-1.6
3,033,878	+		GFF2978	0.46	+0.5
3,033,881	-		GFF2978	0.46	-1.4
3,033,889	+		GFF2978	0.47	-0.1
3,033,891	+		GFF2978	0.47	+0.1
3,033,897	-		GFF2978	0.48	-0.4
3,033,899	-		GFF2978	0.48	-0.1
3,033,958	+		GFF2978	0.52	+1.3
3,033,958	+		GFF2978	0.52	+1.0
3,033,958	+		GFF2978	0.52	-1.9
3,033,958	+		GFF2978	0.52	-1.6
3,033,958	+		GFF2978	0.52	-1.5
3,033,966	-		GFF2978	0.53	-0.5
3,033,966	-		GFF2978	0.53	+1.5
3,033,966	-		GFF2978	0.53	+0.6
3,033,966	-		GFF2978	0.53	+0.5
3,033,966	-		GFF2978	0.53	-0.2
3,033,989	+		GFF2978	0.54	+0.9
3,033,995	+		GFF2978	0.55	-1.9
3,033,998	-		GFF2978	0.55	+0.5
3,034,000	+		GFF2978	0.55	-0.4
3,034,000	+		GFF2978	0.55	+0.5
3,034,002	-		GFF2978	0.55	-0.6
3,034,003	-		GFF2978	0.55	+0.3
3,034,008	-		GFF2978	0.56	+1.9
3,034,008	-		GFF2978	0.56	-1.1
3,034,008	-		GFF2978	0.56	-1.4
3,034,008	-		GFF2978	0.56	-0.1
3,034,008	-		GFF2978	0.56	-1.0
3,034,008	-		GFF2978	0.56	+0.5
3,034,013	-		GFF2978	0.56	-0.2
3,034,035	+		GFF2978	0.57	+0.1
3,034,037	-		GFF2978	0.58	-0.3
3,034,059	+		GFF2978	0.59	+0.6
3,034,065	+		GFF2978	0.60	+0.2
3,034,073	+		GFF2978	0.60	-1.0
3,034,073	+		GFF2978	0.60	+0.5
3,034,155	+		GFF2978	0.66	+0.3
3,034,155	+		GFF2978	0.66	-1.5
3,034,155	+		GFF2978	0.66	+1.6
3,034,159	+		GFF2978	0.66	-0.4
3,034,163	-		GFF2978	0.67	-2.3
3,034,185	-		GFF2978	0.68	-1.9
3,034,199	-		GFF2978	0.69	-1.3
3,034,202	-		GFF2978	0.69	+0.2
3,034,232	-		GFF2978	0.71	+0.2
3,034,232	-		GFF2978	0.71	+0.5
3,034,261	+		GFF2978	0.73	+0.2
3,034,263	-		GFF2978	0.74	-0.4
3,034,269	-		GFF2978	0.74	-0.1
3,034,345	+		GFF2978	0.79	+0.1
3,034,350	+		GFF2978	0.80	+0.1
3,034,355	+		GFF2978	0.80	-0.8
3,034,363	-		GFF2978	0.81	-1.3
3,034,385	+		GFF2978	0.82	-1.3
3,034,390	+		GFF2978	0.83	-1.4
3,034,393	-		GFF2978	0.83	+0.6
3,034,398	-		GFF2978	0.83	-1.5
3,034,441	+		GFF2978	0.86	+0.3
3,034,441	+		GFF2978	0.86	-0.7
3,034,446	+		GFF2978	0.87	+0.9
3,034,455	+		GFF2978	0.87	-0.8
3,034,455	+		GFF2978	0.87	-0.7
3,034,460	+		GFF2978	0.88	-0.5
3,034,463	-		GFF2978	0.88	-1.5
3,034,463	-		GFF2978	0.88	-1.0
3,034,465	+		GFF2978	0.88	-1.6
3,034,465	+		GFF2978	0.88	-0.5
3,034,465	+		GFF2978	0.88	+0.4
3,034,465	+		GFF2978	0.88	-1.1
3,034,465	+		GFF2978	0.88	+0.5
3,034,465	+		GFF2978	0.88	+1.4
3,034,473	-		GFF2978	0.89	+1.5
3,034,473	-		GFF2978	0.89	+1.7
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3,034,473	-		GFF2978	0.89	-1.3
3,034,473	-		GFF2978	0.89	-1.1
3,034,490	+		GFF2978	0.90	+1.4
3,034,493	-				-1.0
3,034,511	-				+0.2
3,034,534	+				-0.6
3,034,534	+				+1.1
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3,034,575	-				-2.0
3,034,578	+				+0.1
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3,034,587	+				+0.1
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3,034,592	+				-0.6
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3,034,592	+				-0.3
3,034,595	-				-2.1
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3,034,600	-				+0.7
3,034,605	-				+1.7
3,034,613	-				-1.3
3,034,624	-				+0.5
3,034,689	+				-1.1
3,034,705	+				+0.7
3,034,742	+		GFF2979	0.11	-1.2
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3,034,750	+		GFF2979	0.13	-2.1
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3,034,760	+		GFF2979	0.14	-1.3
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3,034,842	-		GFF2979	0.28	-0.1
3,034,845	+		GFF2979	0.29	+1.0
3,034,863	-		GFF2979	0.32	+0.2
3,034,867	+		GFF2979	0.32	+0.3
3,034,910	-		GFF2979	0.40	-1.0
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3,034,959	-		GFF2979	0.48	+2.4
3,034,972	+		GFF2979	0.50	+0.6
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3,035,005	-		GFF2979	0.56	-0.2
3,035,005	-		GFF2979	0.56	-0.6
3,035,005	-		GFF2979	0.56	-2.4
3,035,021	+		GFF2979	0.58	+0.3
3,035,026	+		GFF2979	0.59	-0.9
3,035,026	+		GFF2979	0.59	-1.2
3,035,026	+		GFF2979	0.59	-2.2
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3,035,029	-		GFF2979	0.60	-2.1
3,035,031	+		GFF2979	0.60	-0.2
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3,035,062	-		GFF2979	0.65	-0.4
3,035,062	-		GFF2979	0.65	-1.1
3,035,072	+		GFF2979	0.67	+0.1
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3,035,077	+		GFF2979	0.68	-1.3
3,035,082	+		GFF2979	0.69	-0.3
3,035,090	+		GFF2979	0.70	-2.3
3,035,090	-		GFF2979	0.70	-1.8
3,035,098	-		GFF2979	0.71	-1.4
3,035,104	+		GFF2979	0.72	-1.2
3,035,104	+		GFF2979	0.72	+0.3
3,035,112	-		GFF2979	0.74	-2.1
3,035,112	-		GFF2979	0.74	-0.8
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3,035,146	+		GFF2979	0.79	-0.7
3,035,146	+		GFF2979	0.79	-0.9
3,035,146	+		GFF2979	0.79	-1.3
3,035,146	+		GFF2979	0.79	+1.2
3,035,146	+		GFF2979	0.79	-0.7
3,035,146	+		GFF2979	0.79	+1.6
3,035,146	+		GFF2979	0.79	+0.8
3,035,151	+		GFF2979	0.80	-0.9
3,035,154	-		GFF2979	0.81	-1.7
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3,035,154	-		GFF2979	0.81	-1.6
3,035,154	-		GFF2979	0.81	-1.1
3,035,174	+		GFF2979	0.84	+0.2
3,035,178	-		GFF2979	0.85	-1.2
3,035,187	+		GFF2979	0.86	+0.1
3,035,204	-		GFF2979	0.89	-0.0
3,035,214	-				+0.4
3,035,246	+				+1.4
3,035,255	+				+0.2
3,035,263	-				-1.0
3,035,263	-				-0.5
3,035,274	-				-1.9
3,035,277	+				-0.9
3,035,285	-				-1.6
3,035,309	-				-1.6
3,035,339	-				-0.4
3,035,384	+				-0.3
3,035,400	+				-0.6
3,035,402	-				+1.5
3,035,402	-				-0.1
3,035,404	+				-0.1
3,035,411	-		GFF2980	0.12	-1.2
3,035,444	+		GFF2980	0.32	-0.4
3,035,452	-		GFF2980	0.36	-0.0
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3,035,472	-		GFF2980	0.48	-0.6
3,035,488	-		GFF2980	0.58	-0.8
3,035,489	+		GFF2980	0.58	-0.8
3,035,498	-		GFF2980	0.64	+0.4
3,035,502	-		GFF2980	0.66	+1.3
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3,035,504	+		GFF2980	0.67	-0.3
3,035,533	+		GFF2980	0.85	-1.4
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3,035,541	-		GFF2980	0.89	+0.4
3,035,543	+				-0.1
3,035,547	-				-1.7
3,035,553	+				+0.3
3,035,621	+				-0.2
3,035,626	+				+1.1
3,035,626	+				-0.6