Strain Fitness in Sphingobium sp. HT1-2 around GFF2916

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,984,512	-		GFF2914	0.71	-0.3
2,984,513	+		GFF2914	0.71	-0.7
2,984,540	+		GFF2914	0.73	+0.8
2,984,545	+		GFF2914	0.73	+0.8
2,984,548	-		GFF2914	0.73	-0.3
2,984,548	-		GFF2914	0.73	-0.0
2,984,548	-		GFF2914	0.73	+0.8
2,984,548	-		GFF2914	0.73	+0.6
2,984,553	-		GFF2914	0.74	-0.4
2,984,559	-		GFF2914	0.74	+0.5
2,984,582	-		GFF2914	0.75	-0.7
2,984,602	+		GFF2914	0.77	-1.7
2,984,602	+		GFF2914	0.77	+0.7
2,984,602	+		GFF2914	0.77	-0.2
2,984,602	+		GFF2914	0.77	-0.4
2,984,602	+		GFF2914	0.77	-0.2
2,984,602	+		GFF2914	0.77	+1.7
2,984,602	+		GFF2914	0.77	+1.2
2,984,602	+		GFF2914	0.77	-0.1
2,984,604	+		GFF2914	0.77	+0.8
2,984,607	+		GFF2914	0.77	+0.2
2,984,610	-		GFF2914	0.77	+0.5
2,984,610	-		GFF2914	0.77	+0.5
2,984,610	-		GFF2914	0.77	-0.6
2,984,610	-		GFF2914	0.77	-2.1
2,984,610	-		GFF2914	0.77	-0.5
2,984,610	-		GFF2914	0.77	-0.7
2,984,610	-		GFF2914	0.77	-1.2
2,984,615	-		GFF2914	0.77	+0.8
2,984,620	-		GFF2914	0.78	-1.1
2,984,622	+		GFF2914	0.78	+0.1
2,984,627	+		GFF2914	0.78	-0.2
2,984,627	+		GFF2914	0.78	-1.3
2,984,635	-		GFF2914	0.79	-0.2
2,984,651	-		GFF2914	0.80	+0.7
2,984,654	-		GFF2914	0.80	-1.3
2,984,661	-		GFF2914	0.80	-0.8
2,984,662	+		GFF2914	0.80	+0.7
2,984,683	-		GFF2914	0.82	+1.4
2,984,701	+		GFF2914	0.83	+0.3
2,984,701	+		GFF2914	0.83	-1.0
2,984,701	+		GFF2914	0.83	-0.1
2,984,703	+		GFF2914	0.83	+0.3
2,984,718	-		GFF2914	0.84	+1.1
2,984,730	+		GFF2914	0.84	+0.6
2,984,743	+		GFF2914	0.85	-1.4
2,984,745	+		GFF2914	0.85	-0.2
2,984,745	+		GFF2914	0.85	+0.4
2,984,754	-		GFF2914	0.86	-1.1
2,984,757	+		GFF2914	0.86	-0.3
2,984,757	+		GFF2914	0.86	-1.6
2,984,757	+		GFF2914	0.86	-0.3
2,984,757	+		GFF2914	0.86	-1.2
2,984,757	+		GFF2914	0.86	+1.6
2,984,762	+		GFF2914	0.86	-0.9
2,984,765	-		GFF2914	0.86	-0.7
2,984,800	+		GFF2914	0.89	+0.9
2,984,810	-		GFF2914	0.89	+0.6
2,984,810	-		GFF2914	0.89	-0.7
2,984,810	-		GFF2914	0.89	-0.0
2,984,856	+				-0.2
2,984,856	+				+0.2
2,984,885	-				+1.2
2,984,894	+				-1.6
2,984,905	-				+1.2
2,984,917	+				-1.9
2,984,925	-				+1.0
2,984,931	+				+0.1
2,984,948	+				-0.5
2,984,953	+				-0.6
2,984,961	-				+0.5
2,984,993	+				-0.8
2,985,008	-				+1.0
2,985,018	-				-0.5
2,985,024	+				-0.8
2,985,037	-		GFF2915	0.11	+0.0
2,985,053	-		GFF2915	0.14	+0.3
2,985,053	-		GFF2915	0.14	-1.9
2,985,053	-		GFF2915	0.14	-1.1
2,985,055	+		GFF2915	0.15	+0.7
2,985,055	+		GFF2915	0.15	-0.2
2,985,055	+		GFF2915	0.15	+0.7
2,985,063	-		GFF2915	0.16	-2.0
2,985,063	-		GFF2915	0.16	-0.2
2,985,068	-		GFF2915	0.17	+1.5
2,985,094	+		GFF2915	0.23	+0.4
2,985,103	-		GFF2915	0.25	+0.4
2,985,121	-		GFF2915	0.28	-1.8
2,985,133	+		GFF2915	0.31	+0.9
2,985,135	+		GFF2915	0.31	-0.2
2,985,139	-		GFF2915	0.32	+0.3
2,985,140	+		GFF2915	0.32	-1.1
2,985,140	+		GFF2915	0.32	-0.0
2,985,143	-		GFF2915	0.33	-1.3
2,985,145	+		GFF2915	0.34	-0.4
2,985,148	-		GFF2915	0.34	+0.7
2,985,150	-		GFF2915	0.35	-0.4
2,985,154	+		GFF2915	0.35	-0.2
2,985,154	+		GFF2915	0.35	+0.2
2,985,154	+		GFF2915	0.35	+0.7
2,985,162	-		GFF2915	0.37	-2.1
2,985,162	-		GFF2915	0.37	-1.5
2,985,162	-		GFF2915	0.37	-0.9
2,985,162	-		GFF2915	0.37	-2.2
2,985,162	-		GFF2915	0.37	-2.2
2,985,162	-		GFF2915	0.37	+0.1
2,985,211	+		GFF2915	0.47	-0.9
2,985,217	+		GFF2915	0.49	+1.8
2,985,364	-		GFF2915	0.80	-1.9
2,985,418	-				-0.8
2,985,488	-				-0.7
2,985,503	+				-0.7
2,985,626	+		GFF2916	0.24	-1.2
2,985,639	+		GFF2916	0.26	-0.1
2,985,639	+		GFF2916	0.26	+0.1
2,985,703	-		GFF2916	0.39	-0.3
2,985,703	-		GFF2916	0.39	-1.0
2,985,703	-		GFF2916	0.39	-0.7
2,985,851	+		GFF2916	0.67	+0.7
2,985,856	+		GFF2916	0.68	-1.7
2,985,856	+		GFF2916	0.68	-0.1
2,985,856	+		GFF2916	0.68	+0.4
2,985,856	+		GFF2916	0.68	+1.3
2,985,856	+		GFF2916	0.68	-1.7
2,985,881	+		GFF2916	0.73	-0.5
2,985,886	+		GFF2916	0.74	-0.3
2,985,889	-		GFF2916	0.75	+0.7
2,985,907	+		GFF2916	0.78	+0.0
2,985,915	-		GFF2916	0.80	-0.3
2,985,941	+		GFF2916	0.85	+0.1
2,985,974	+				+1.1
2,985,974	+				-0.4
2,985,982	-				-0.3
2,985,983	+				-0.7
2,985,986	-				+0.6
2,985,989	+				+0.5
2,985,992	-				-0.7
2,986,019	+				+0.0
2,986,026	+				-1.3
2,986,034	-				+0.0
2,986,044	+				-0.1
2,986,057	-				-1.3
2,986,061	+				-0.4
2,986,066	+				-0.1
2,986,074	-				-0.6
2,986,095	+				+0.2
2,986,095	+				-0.6
2,986,100	+				-1.2
2,986,102	+				+0.2
2,986,103	-				+0.4
2,986,110	-				-0.3
2,986,110	-				+0.7
2,986,111	-				-1.5
2,986,137	+		GFF2917	0.15	-2.1
2,986,137	+		GFF2917	0.15	+0.5
2,986,142	+		GFF2917	0.17	-1.1
2,986,142	+		GFF2917	0.17	-0.4
2,986,148	+		GFF2917	0.19	-0.4
2,986,148	+		GFF2917	0.19	-0.7
2,986,148	+		GFF2917	0.19	-0.8
2,986,148	+		GFF2917	0.19	-1.0
2,986,155	-		GFF2917	0.21	-2.1
2,986,155	-		GFF2917	0.21	-0.2
2,986,156	-		GFF2917	0.22	+0.8
2,986,156	-		GFF2917	0.22	+0.4
2,986,156	-		GFF2917	0.22	-2.1
2,986,156	-		GFF2917	0.22	-0.4
2,986,156	-		GFF2917	0.22	+0.9
2,986,156	-		GFF2917	0.22	+0.3
2,986,172	+		GFF2917	0.28	-0.0
2,986,175	-		GFF2917	0.29	-0.5
2,986,175	-		GFF2917	0.29	-0.8
2,986,175	-		GFF2917	0.29	-1.7
2,986,177	+		GFF2917	0.30	-0.9
2,986,180	-		GFF2917	0.31	+0.5
2,986,180	-		GFF2917	0.31	-1.7
2,986,180	-		GFF2917	0.31	+1.1
2,986,180	-		GFF2917	0.31	-1.0
2,986,182	+		GFF2917	0.31	-0.7
2,986,185	-		GFF2917	0.33	-0.3
2,986,187	+		GFF2917	0.33	-1.4
2,986,187	+		GFF2917	0.33	+0.5
2,986,187	+		GFF2917	0.33	+0.1
2,986,187	+		GFF2917	0.33	+0.1
2,986,187	+		GFF2917	0.33	+2.3
2,986,187	+		GFF2917	0.33	-0.2
2,986,187	+		GFF2917	0.33	+0.7
2,986,187	+		GFF2917	0.33	-0.5
2,986,187	+		GFF2917	0.33	-0.2
2,986,187	+		GFF2917	0.33	-1.6
2,986,187	+		GFF2917	0.33	-0.2
2,986,187	+		GFF2917	0.33	+0.4
2,986,190	-		GFF2917	0.34	+0.6
2,986,195	-		GFF2917	0.36	-0.9
2,986,195	-		GFF2917	0.36	-0.5
2,986,195	-		GFF2917	0.36	+0.1
2,986,195	-		GFF2917	0.36	-0.4
2,986,195	-		GFF2917	0.36	+1.5
2,986,195	-		GFF2917	0.36	-0.5
2,986,195	-		GFF2917	0.36	-1.6
2,986,195	-		GFF2917	0.36	-1.8
2,986,195	-		GFF2917	0.36	-1.4
2,986,195	-		GFF2917	0.36	-0.4
2,986,195	-		GFF2917	0.36	+0.1
2,986,200	-		GFF2917	0.38	+0.6
2,986,205	-		GFF2917	0.40	+0.5
2,986,205	-		GFF2917	0.40	-1.2
2,986,205	-		GFF2917	0.40	+0.5
2,986,205	-		GFF2917	0.40	-0.0
2,986,258	+		GFF2917	0.60	-0.4
2,986,266	-		GFF2917	0.63	-0.6
2,986,266	-		GFF2917	0.63	+1.5
2,986,266	-		GFF2917	0.63	-1.3
2,986,269	+		GFF2917	0.64	+0.4
2,986,275	+		GFF2917	0.66	+0.1
2,986,280	+		GFF2917	0.68	+0.4
2,986,283	-		GFF2917	0.69	+0.7
2,986,293	-		GFF2917	0.73	+0.4
2,986,360	+				+0.4
2,986,360	+				-1.9
2,986,360	+				+0.9
2,986,368	-				-0.2
2,986,368	-				+0.7
2,986,376	-				+1.2
2,986,399	+				+0.6
2,986,401	-				-1.2
2,986,418	+		GFF2918	0.10	-1.2
2,986,424	-		GFF2918	0.11	-1.1
2,986,424	-		GFF2918	0.11	-1.3
2,986,426	+		GFF2918	0.12	-0.4
2,986,426	-		GFF2918	0.12	-0.4
2,986,428	+		GFF2918	0.12	-2.0
2,986,428	+		GFF2918	0.12	+1.0
2,986,428	+		GFF2918	0.12	+0.5
2,986,428	+		GFF2918	0.12	+1.5
2,986,436	-		GFF2918	0.13	+0.5
2,986,436	-		GFF2918	0.13	+0.7
2,986,436	-		GFF2918	0.13	-0.4
2,986,436	-		GFF2918	0.13	-0.8
2,986,436	-		GFF2918	0.13	-1.3
2,986,436	-		GFF2918	0.13	+0.9
2,986,436	-		GFF2918	0.13	+0.4
2,986,436	-		GFF2918	0.13	+1.3
2,986,447	+		GFF2918	0.15	-1.1
2,986,447	-		GFF2918	0.15	-0.2
2,986,454	+		GFF2918	0.17	+0.6
2,986,454	+		GFF2918	0.17	+0.3
2,986,454	+		GFF2918	0.17	-1.2
2,986,454	+		GFF2918	0.17	-0.0
2,986,454	+		GFF2918	0.17	-2.2
2,986,454	+		GFF2918	0.17	-1.4
2,986,454	+		GFF2918	0.17	-1.1
2,986,454	+		GFF2918	0.17	-1.8
2,986,454	+		GFF2918	0.17	-0.7
2,986,454	+		GFF2918	0.17	-0.6
2,986,455	-		GFF2918	0.17	-0.4
2,986,462	-		GFF2918	0.18	-0.1
2,986,462	-		GFF2918	0.18	-0.1
2,986,462	-		GFF2918	0.18	+0.4
2,986,462	-		GFF2918	0.18	+0.1
2,986,462	-		GFF2918	0.18	+0.2
2,986,462	-		GFF2918	0.18	-2.0
2,986,462	-		GFF2918	0.18	+0.3
2,986,462	-		GFF2918	0.18	+1.0
2,986,462	-		GFF2918	0.18	+1.1
2,986,462	-		GFF2918	0.18	-1.0
2,986,462	-		GFF2918	0.18	+2.0
2,986,485	-		GFF2918	0.22	-0.9
2,986,547	+		GFF2918	0.34	-1.5
2,986,547	+		GFF2918	0.34	+0.5
2,986,547	+		GFF2918	0.34	-0.0
2,986,547	+		GFF2918	0.34	+1.1
2,986,547	+		GFF2918	0.34	-1.7
2,986,555	-		GFF2918	0.35	-1.2
2,986,555	-		GFF2918	0.35	-0.3
2,986,560	+		GFF2918	0.36	-2.3
2,986,565	+		GFF2918	0.37	+0.7
2,986,565	+		GFF2918	0.37	+1.5
2,986,568	-		GFF2918	0.38	-0.4
2,986,570	-		GFF2918	0.38	-2.1
2,986,571	+		GFF2918	0.38	-1.3
2,986,571	+		GFF2918	0.38	-0.2
2,986,573	-		GFF2918	0.39	+0.3
2,986,573	-		GFF2918	0.39	+0.8
2,986,573	-		GFF2918	0.39	+0.1
2,986,578	-		GFF2918	0.40	-0.2
2,986,579	-		GFF2918	0.40	+0.4
2,986,597	-		GFF2918	0.43	-1.6
2,986,606	+		GFF2918	0.45	-0.4
2,986,633	-		GFF2918	0.50	+1.2
2,986,635	-		GFF2918	0.50	+0.5
2,986,637	+		GFF2918	0.50	+1.2
2,986,639	+		GFF2918	0.51	-2.4
2,986,649	+		GFF2918	0.53	+0.2
2,986,651	+		GFF2918	0.53	-0.8
2,986,654	+		GFF2918	0.54	-0.1
2,986,654	+		GFF2918	0.54	-0.4
2,986,657	-		GFF2918	0.54	-1.5
2,986,659	+		GFF2918	0.55	+1.0
2,986,659	+		GFF2918	0.55	-1.7
2,986,659	+		GFF2918	0.55	-0.0
2,986,659	+		GFF2918	0.55	-0.7
2,986,677	-		GFF2918	0.58	+0.9
2,986,677	-		GFF2918	0.58	-0.1
2,986,677	-		GFF2918	0.58	+0.7
2,986,709	-		GFF2918	0.64	+0.4
2,986,765	+		GFF2918	0.74	+0.1
2,986,779	+		GFF2918	0.77	-0.3
2,986,782	-		GFF2918	0.77	-0.0
2,986,782	-		GFF2918	0.77	-0.6
2,986,783	-		GFF2918	0.77	-0.5
2,986,783	-		GFF2918	0.77	-0.4
2,986,783	-		GFF2918	0.77	-0.9
2,986,786	+		GFF2918	0.78	-0.5
2,986,787	-		GFF2918	0.78	+0.5
2,986,809	+		GFF2918	0.82	-0.0
2,986,842	+		GFF2918	0.88	-0.6
2,986,842	-		GFF2918	0.88	-0.7
2,986,862	+				-0.8
2,986,862	+				+0.1
2,986,867	+				-0.9
2,986,870	+				-1.4
2,986,870	-				-1.2
2,986,885	-				-1.0
2,986,923	-				+0.6
2,986,923	-				-1.4
2,986,923	-				+0.3
2,986,955	+		GFF2919	0.10	+0.1
2,986,967	+		GFF2919	0.13	+0.1
2,986,967	+		GFF2919	0.13	-0.8
2,986,971	+		GFF2919	0.13	-0.2
2,987,015	-		GFF2919	0.22	-1.1