Strain Fitness in Sphingobium sp. HT1-2 around GFF2876

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,933,254	-		GFF2874	0.85	+0.2
2,933,256	+		GFF2874	0.85	+0.2
2,933,256	+		GFF2874	0.85	-2.5
2,933,269	-		GFF2874	0.86	-0.3
2,933,271	+		GFF2874	0.86	-0.3
2,933,271	+		GFF2874	0.86	+0.1
2,933,279	-		GFF2874	0.86	+1.3
2,933,281	+		GFF2874	0.87	-1.8
2,933,284	-		GFF2874	0.87	-0.7
2,933,289	-		GFF2874	0.87	-2.3
2,933,289	-		GFF2874	0.87	+0.8
2,933,296	-		GFF2874	0.87	+1.1
2,933,335	+		GFF2874	0.89	-0.7
2,933,340	-		GFF2874	0.89	+1.1
2,933,352	-		GFF2874	0.90	-0.1
2,933,353	+				-0.6
2,933,380	-				-0.5
2,933,412	+				+0.9
2,933,438	-				-2.5
2,933,439	-				+0.2
2,933,439	-				-0.4
2,933,461	-				-0.3
2,933,466	-				-0.8
2,933,530	+				-2.3
2,933,563	+				-0.8
2,933,563	+				-2.5
2,933,568	+				-1.5
2,933,571	-				-0.3
2,933,571	-				-1.8
2,933,581	-				+1.9
2,933,592	-				+0.4
2,933,614	+				-0.3
2,933,631	+				-0.4
2,933,631	-				-0.9
2,933,638	+		GFF2875	0.10	+1.4
2,933,641	-		GFF2875	0.11	-1.4
2,933,641	-		GFF2875	0.11	+0.0
2,933,648	+		GFF2875	0.12	-0.6
2,933,704	+		GFF2875	0.21	-2.5
2,933,742	-		GFF2875	0.27	-1.1
2,933,755	+		GFF2875	0.29	+0.1
2,933,779	-		GFF2875	0.33	+0.4
2,933,784	-		GFF2875	0.33	+1.3
2,933,787	-		GFF2875	0.34	+0.1
2,933,803	+		GFF2875	0.36	-1.4
2,933,816	+		GFF2875	0.38	-0.3
2,933,839	-		GFF2875	0.42	-0.5
2,933,839	-		GFF2875	0.42	+0.7
2,933,880	-		GFF2875	0.48	+0.5
2,933,922	-		GFF2875	0.55	-0.1
2,933,950	-		GFF2875	0.60	+1.0
2,933,967	+		GFF2875	0.62	+0.6
2,933,967	+		GFF2875	0.62	-2.5
2,933,967	+		GFF2875	0.62	-0.9
2,933,975	-		GFF2875	0.64	-0.1
2,933,975	-		GFF2875	0.64	-1.1
2,933,975	-		GFF2875	0.64	-0.1
2,933,977	+		GFF2875	0.64	+0.9
2,933,977	+		GFF2875	0.64	-2.2
2,933,977	+		GFF2875	0.64	-0.7
2,934,003	+		GFF2875	0.68	+0.3
2,934,012	-		GFF2875	0.69	+0.9
2,934,013	-		GFF2875	0.70	-1.8
2,934,059	+		GFF2875	0.77	-0.7
2,934,066	-		GFF2875	0.78	-0.6
2,934,067	+		GFF2875	0.78	+0.7
2,934,067	-		GFF2875	0.78	-1.8
2,934,067	-		GFF2875	0.78	+0.5
2,934,069	+		GFF2875	0.78	-1.3
2,934,076	-		GFF2875	0.79	-0.2
2,934,099	+		GFF2875	0.83	-1.8
2,934,099	+		GFF2875	0.83	+1.0
2,934,099	+		GFF2875	0.83	-0.8
2,934,099	+		GFF2875	0.83	+1.0
2,934,107	-		GFF2875	0.84	-0.6
2,934,107	-		GFF2875	0.84	+0.6
2,934,107	-		GFF2875	0.84	+0.4
2,934,107	-		GFF2875	0.84	-0.5
2,934,135	+		GFF2875	0.89	+1.0
2,934,135	+		GFF2875	0.89	+1.8
2,934,135	+		GFF2875	0.89	+0.8
2,934,135	+		GFF2875	0.89	-0.3
2,934,135	+		GFF2875	0.89	+0.5
2,934,143	-				+0.1
2,934,143	-				-1.4
2,934,143	-				-0.8
2,934,150	+				-1.7
2,934,150	+				-0.8
2,934,158	-				+0.3
2,934,167	+				+0.1
2,934,167	+				-0.2
2,934,167	+				-0.5
2,934,169	+				+0.6
2,934,175	-				-0.3
2,934,182	+				+0.6
2,934,185	-				+0.3
2,934,195	-				-0.2
2,934,221	+				+0.4
2,934,231	+				+0.1
2,934,236	+				+0.1
2,934,236	+				-0.2
2,934,236	+				-1.9
2,934,243	+				+1.3
2,934,243	+				-0.8
2,934,313	+				+0.3
2,934,313	+				+1.7
2,934,313	+				+1.5
2,934,313	+				+0.5
2,934,313	+				-1.1
2,934,313	+				-0.3
2,934,313	+				-0.8
2,934,321	-				+0.1
2,934,321	-				-1.9
2,934,321	-				+0.7
2,934,321	-				-0.3
2,934,321	-				-0.2
2,934,321	-				-1.2
2,934,321	-				-0.7
2,934,321	-				+0.0
2,934,323	+				-0.3
2,934,328	+				+0.3
2,934,331	-				+0.6
2,934,354	+		GFF2876	0.11	-1.2
2,934,407	-		GFF2876	0.17	-1.2
2,934,414	+		GFF2876	0.18	+0.3
2,934,480	-		GFF2876	0.26	+0.6
2,934,485	+		GFF2876	0.26	-0.4
2,934,502	+		GFF2876	0.28	+1.3
2,934,507	+		GFF2876	0.29	-0.5
2,934,507	+		GFF2876	0.29	-0.8
2,934,507	+		GFF2876	0.29	-0.3
2,934,507	+		GFF2876	0.29	-1.0
2,934,507	+		GFF2876	0.29	-2.0
2,934,507	+		GFF2876	0.29	+0.5
2,934,507	+		GFF2876	0.29	+0.5
2,934,507	+		GFF2876	0.29	-0.4
2,934,510	-		GFF2876	0.29	-1.9
2,934,515	-		GFF2876	0.30	-0.0
2,934,515	-		GFF2876	0.30	-0.4
2,934,515	-		GFF2876	0.30	-0.2
2,934,515	-		GFF2876	0.30	-1.1
2,934,515	-		GFF2876	0.30	+0.5
2,934,515	-		GFF2876	0.30	+0.4
2,934,515	-		GFF2876	0.30	-0.4
2,934,515	-		GFF2876	0.30	-1.1
2,934,543	+		GFF2876	0.33	+1.1
2,934,543	+		GFF2876	0.33	-0.5
2,934,543	+		GFF2876	0.33	+0.2
2,934,576	+		GFF2876	0.36	+0.1
2,934,576	+		GFF2876	0.36	-0.7
2,934,584	-		GFF2876	0.37	-0.4
2,934,592	+		GFF2876	0.38	+0.8
2,934,612	-		GFF2876	0.41	-1.7
2,934,622	-		GFF2876	0.42	+0.6
2,934,633	-		GFF2876	0.43	-0.8
2,934,644	+		GFF2876	0.44	+0.2
2,934,644	+		GFF2876	0.44	-0.5
2,934,644	+		GFF2876	0.44	+0.3
2,934,652	-		GFF2876	0.45	-1.5
2,934,669	+		GFF2876	0.47	-1.5
2,934,677	-		GFF2876	0.48	+0.2
2,934,683	-		GFF2876	0.49	-0.4
2,934,684	-		GFF2876	0.49	-0.8
2,934,686	-		GFF2876	0.49	-1.2
2,934,709	-		GFF2876	0.51	+0.0
2,934,711	+		GFF2876	0.52	-0.2
2,934,719	-		GFF2876	0.53	-1.6
2,934,725	-		GFF2876	0.53	-1.8
2,934,726	-		GFF2876	0.53	-0.3
2,934,744	+		GFF2876	0.55	+1.0
2,934,744	+		GFF2876	0.55	-0.0
2,934,744	+		GFF2876	0.55	-2.3
2,934,745	-		GFF2876	0.56	+0.5
2,934,752	-		GFF2876	0.56	+1.0
2,934,758	-		GFF2876	0.57	-0.8
2,934,785	-		GFF2876	0.60	-2.2
2,934,796	+		GFF2876	0.61	+0.2
2,934,796	+		GFF2876	0.61	-0.3
2,934,796	+		GFF2876	0.61	-1.8
2,934,804	-		GFF2876	0.62	-0.3
2,934,804	-		GFF2876	0.62	-1.8
2,934,808	-		GFF2876	0.63	-0.1
2,934,848	-		GFF2876	0.67	-2.0
2,934,865	-		GFF2876	0.69	+0.5
2,934,948	+		GFF2876	0.78	-1.1
2,934,964	-		GFF2876	0.80	+0.4
2,934,968	-		GFF2876	0.81	-0.1
2,934,970	+		GFF2876	0.81	-0.2
2,934,970	+		GFF2876	0.81	-0.7
2,935,021	+		GFF2876	0.87	-1.4
2,935,024	-		GFF2876	0.87	-0.1
2,935,034	-		GFF2876	0.88	-0.4
2,935,034	-		GFF2876	0.88	+0.3
2,935,036	+		GFF2876	0.88	-1.8
2,935,036	+		GFF2876	0.88	-1.6
2,935,036	+		GFF2876	0.88	-0.8
2,935,036	+		GFF2876	0.88	-0.5
2,935,036	+		GFF2876	0.88	-0.8
2,935,036	+		GFF2876	0.88	-0.1
2,935,036	+		GFF2876	0.88	-0.0
2,935,036	+		GFF2876	0.88	-1.3
2,935,036	+		GFF2876	0.88	-0.5
2,935,036	+		GFF2876	0.88	-1.1
2,935,036	+		GFF2876	0.88	-1.0
2,935,036	+		GFF2876	0.88	+0.6
2,935,039	-		GFF2876	0.89	-0.5
2,935,044	-		GFF2876	0.89	-0.9
2,935,044	-		GFF2876	0.89	+0.7
2,935,044	-		GFF2876	0.89	+0.0
2,935,044	-		GFF2876	0.89	+1.6
2,935,044	-		GFF2876	0.89	-0.7
2,935,044	-		GFF2876	0.89	-2.0
2,935,044	-		GFF2876	0.89	+0.8
2,935,044	-		GFF2876	0.89	-0.8
2,935,044	-		GFF2876	0.89	+0.9
2,935,046	+		GFF2876	0.89	+0.6
2,935,046	+		GFF2876	0.89	-1.0
2,935,053	+				+0.3
2,935,054	-				-0.4
2,935,054	-				-0.4
2,935,054	-				+0.8
2,935,054	-				-1.8
2,935,055	+				+1.2
2,935,055	-				-1.8
2,935,061	+				-0.9
2,935,072	+				-0.7
2,935,080	-				+1.6
2,935,080	-				+1.0
2,935,081	+				-0.2
2,935,118	-				+0.7
2,935,124	+				-0.2
2,935,132	-				+0.3
2,935,134	+				-0.7
2,935,139	+				-1.2
2,935,139	+				-0.5
2,935,142	-				+1.0
2,935,142	-				+0.6
2,935,147	-				+0.8
2,935,147	-				-1.2
2,935,147	-				-0.7
2,935,166	+				-0.7
2,935,166	+				-0.3
2,935,174	-				-1.2
2,935,179	+				-0.4
2,935,194	+				-0.6
2,935,196	-				+0.2
2,935,197	-				-0.3
2,935,197	-				-0.2
2,935,197	-				-0.0
2,935,202	-				-1.8
2,935,206	+				-0.2
2,935,206	+				+0.5
2,935,214	-				+1.3
2,935,214	-				-0.8
2,935,214	-				+0.9
2,935,218	+				+0.8
2,935,248	-				-2.1
2,935,262	-				-0.0
2,935,292	-		GFF2877	0.12	-1.3
2,935,326	+		GFF2877	0.15	-0.5
2,935,326	+		GFF2877	0.15	+0.0
2,935,379	-		GFF2877	0.20	-1.0
2,935,391	+		GFF2877	0.21	-1.3
2,935,411	-		GFF2877	0.23	+1.1
2,935,421	-		GFF2877	0.24	+0.2
2,935,436	-		GFF2877	0.25	-0.9
2,935,509	+		GFF2877	0.32	-1.1
2,935,604	+		GFF2877	0.41	-1.6
2,935,604	+		GFF2877	0.41	-0.9
2,935,607	-		GFF2877	0.41	-0.1
2,935,630	+		GFF2877	0.44	-1.6
2,935,638	-		GFF2877	0.44	+1.8
2,935,640	+		GFF2877	0.45	-1.5
2,935,682	+		GFF2877	0.48	-1.8
2,935,701	-		GFF2877	0.50	-0.4
2,935,708	+		GFF2877	0.51	+1.4
2,935,716	-		GFF2877	0.52	-0.4
2,935,760	+		GFF2877	0.56	+0.4
2,935,777	+		GFF2877	0.57	+0.3
2,935,785	-		GFF2877	0.58	+0.3
2,935,807	+		GFF2877	0.60	+0.5
2,935,829	+		GFF2877	0.62	+0.3
2,935,829	+		GFF2877	0.62	+0.6
2,935,837	-		GFF2877	0.63	-1.0
2,935,837	-		GFF2877	0.63	-0.8
2,935,837	-		GFF2877	0.63	-0.3
2,935,839	-		GFF2877	0.63	+0.1
2,935,895	-		GFF2877	0.68	+0.4
2,935,924	-		GFF2877	0.71	+0.7
2,935,952	+		GFF2877	0.74	-0.8
2,936,064	-		GFF2877	0.84	+0.2
2,936,069	+		GFF2877	0.85	-0.6
2,936,069	+		GFF2877	0.85	-2.0
2,936,082	-		GFF2877	0.86	-1.2
2,936,092	-		GFF2877	0.87	+0.6
2,936,103	+		GFF2877	0.88	-1.0
2,936,120	+		GFF2877	0.89	+0.2
2,936,128	-				-1.5
2,936,128	-				-0.1
2,936,128	-				-1.3
2,936,128	-				-1.3
2,936,139	+				+0.1
2,936,139	-				+0.4