Strain Fitness in Sphingobium sp. HT1-2 around GFF2846

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,900,083	+				+0.9
2,900,083	+				+2.3
2,900,088	+				+0.5
2,900,096	-		GFF2845	0.10	+0.5
2,900,096	-		GFF2845	0.10	-0.0
2,900,096	-		GFF2845	0.10	+1.1
2,900,112	+		GFF2845	0.12	+1.3
2,900,115	-		GFF2845	0.12	-1.3
2,900,115	-		GFF2845	0.12	-1.0
2,900,115	-		GFF2845	0.12	-0.9
2,900,115	-		GFF2845	0.12	+0.2
2,900,117	+		GFF2845	0.12	-0.5
2,900,120	-		GFF2845	0.13	+0.1
2,900,120	-		GFF2845	0.13	+1.6
2,900,122	+		GFF2845	0.13	-1.8
2,900,125	-		GFF2845	0.13	-0.8
2,900,156	+		GFF2845	0.16	-1.6
2,900,167	+		GFF2845	0.17	+0.2
2,900,180	-		GFF2845	0.19	+0.6
2,900,182	-		GFF2845	0.19	-1.3
2,900,182	-		GFF2845	0.19	-1.2
2,900,193	+		GFF2845	0.20	+0.5
2,900,196	-		GFF2845	0.20	+2.3
2,900,196	-		GFF2845	0.20	-0.1
2,900,203	-		GFF2845	0.21	-0.1
2,900,211	+		GFF2845	0.22	+1.8
2,900,211	+		GFF2845	0.22	-2.0
2,900,211	+		GFF2845	0.22	+1.7
2,900,213	+		GFF2845	0.22	-0.2
2,900,213	+		GFF2845	0.22	+0.3
2,900,219	-		GFF2845	0.22	+0.3
2,900,225	-		GFF2845	0.23	-0.8
2,900,228	+		GFF2845	0.23	+0.6
2,900,228	+		GFF2845	0.23	-1.8
2,900,236	-		GFF2845	0.24	+0.9
2,900,236	-		GFF2845	0.24	+0.1
2,900,236	-		GFF2845	0.24	+0.4
2,900,238	+		GFF2845	0.24	+0.5
2,900,255	+		GFF2845	0.26	+0.0
2,900,258	-		GFF2845	0.26	-0.2
2,900,263	-		GFF2845	0.27	-0.9
2,900,269	-		GFF2845	0.27	-0.5
2,900,282	+		GFF2845	0.28	-1.6
2,900,306	+		GFF2845	0.31	-1.2
2,900,308	+		GFF2845	0.31	+0.4
2,900,314	-		GFF2845	0.32	+0.3
2,900,314	-		GFF2845	0.32	-0.0
2,900,316	+		GFF2845	0.32	-0.8
2,900,328	+		GFF2845	0.33	+0.5
2,900,328	+		GFF2845	0.33	+0.4
2,900,328	+		GFF2845	0.33	-1.2
2,900,328	+		GFF2845	0.33	-0.3
2,900,328	+		GFF2845	0.33	+0.0
2,900,328	+		GFF2845	0.33	-0.7
2,900,328	+		GFF2845	0.33	+0.3
2,900,336	-		GFF2845	0.34	-0.5
2,900,336	-		GFF2845	0.34	+1.1
2,900,341	-		GFF2845	0.34	-0.1
2,900,409	-		GFF2845	0.41	+1.0
2,900,431	+		GFF2845	0.43	+0.3
2,900,432	+		GFF2845	0.43	-1.5
2,900,432	+		GFF2845	0.43	-2.6
2,900,439	-		GFF2845	0.44	+0.8
2,900,440	-		GFF2845	0.44	+1.4
2,900,455	+		GFF2845	0.45	+0.2
2,900,460	+		GFF2845	0.46	-0.1
2,900,467	+		GFF2845	0.46	-0.8
2,900,468	+		GFF2845	0.47	-2.2
2,900,468	+		GFF2845	0.47	-0.4
2,900,475	-		GFF2845	0.47	-0.6
2,900,475	-		GFF2845	0.47	+2.3
2,900,476	-		GFF2845	0.47	+0.5
2,900,476	-		GFF2845	0.47	-0.2
2,900,509	-		GFF2845	0.51	-2.7
2,900,529	+		GFF2845	0.53	+0.5
2,900,529	+		GFF2845	0.53	+0.6
2,900,537	-		GFF2845	0.53	+0.3
2,900,549	+		GFF2845	0.54	-0.3
2,900,557	-		GFF2845	0.55	-0.3
2,900,571	-		GFF2845	0.57	+1.7
2,900,571	-		GFF2845	0.57	-0.8
2,900,571	-		GFF2845	0.57	-0.5
2,900,578	+		GFF2845	0.57	-2.6
2,900,578	+		GFF2845	0.57	-1.6
2,900,600	+		GFF2845	0.59	+0.6
2,900,600	+		GFF2845	0.59	+2.1
2,900,600	+		GFF2845	0.59	-0.5
2,900,600	+		GFF2845	0.59	+0.8
2,900,600	+		GFF2845	0.59	+0.3
2,900,600	+		GFF2845	0.59	+2.5
2,900,603	-		GFF2845	0.60	+0.6
2,900,608	-		GFF2845	0.60	-0.5
2,900,608	-		GFF2845	0.60	+0.7
2,900,608	-		GFF2845	0.60	+0.3
2,900,608	-		GFF2845	0.60	-1.0
2,900,608	-		GFF2845	0.60	+1.0
2,900,610	+		GFF2845	0.60	+0.7
2,900,613	-		GFF2845	0.61	-1.5
2,900,624	+		GFF2845	0.62	+1.0
2,900,624	+		GFF2845	0.62	-1.1
2,900,649	+		GFF2845	0.64	-0.2
2,900,668	+		GFF2845	0.66	+0.8
2,900,679	-		GFF2845	0.67	+0.5
2,900,679	-		GFF2845	0.67	+0.8
2,900,704	+		GFF2845	0.70	-1.5
2,900,709	+		GFF2845	0.70	+0.7
2,900,709	+		GFF2845	0.70	-2.3
2,900,712	-		GFF2845	0.70	-0.5
2,900,717	-		GFF2845	0.71	-0.9
2,900,729	-		GFF2845	0.72	-0.9
2,900,732	+		GFF2845	0.72	-0.5
2,900,733	-		GFF2845	0.72	-0.1
2,900,739	-		GFF2845	0.73	+0.2
2,900,748	+		GFF2845	0.74	-0.3
2,900,827	+		GFF2845	0.82	+1.1
2,900,827	+		GFF2845	0.82	-0.3
2,900,827	+		GFF2845	0.82	-1.3
2,900,827	+		GFF2845	0.82	-0.7
2,900,827	+		GFF2845	0.82	-0.3
2,900,835	-		GFF2845	0.82	-0.9
2,900,835	-		GFF2845	0.82	-2.6
2,900,860	-		GFF2845	0.85	+0.7
2,900,887	-		GFF2845	0.87	-1.3
2,900,902	+		GFF2845	0.89	-1.0
2,900,902	+		GFF2845	0.89	-1.4
2,900,902	+		GFF2845	0.89	-1.2
2,900,907	+		GFF2845	0.89	+0.9
2,900,913	+				-0.1
2,900,921	-				+0.4
2,900,934	-				-1.6
2,900,934	-				-0.5
2,900,948	-				-1.3
2,900,955	-				-2.3
2,900,969	-				+0.6
2,901,008	+				-0.3
2,901,008	+				+0.2
2,901,010	-				+0.4
2,901,016	-				-0.5
2,901,016	-				-0.5
2,901,016	-				+0.5
2,901,016	-				-0.0
2,901,016	-				-0.3
2,901,016	-				-0.4
2,901,016	-				+0.2
2,901,026	-				-1.4
2,901,026	-				-0.7
2,901,026	-				+1.4
2,901,030	-				-1.3
2,901,033	+				-1.6
2,901,059	+				+0.1
2,901,116	-				-1.6
2,901,122	+				-0.7
2,901,126	-				+0.7
2,901,126	-				-0.7
2,901,126	-				-0.0
2,901,128	+				-0.0
2,901,130	-				+0.9
2,901,131	-				+0.7
2,901,149	+				-0.3
2,901,162	+				+0.2
2,901,170	-				-1.7
2,901,170	-				+0.5
2,901,186	+				+0.0
2,901,188	+				+0.8
2,901,188	+				-0.7
2,901,188	+				-0.3
2,901,188	+				+0.5
2,901,188	+				-0.6
2,901,193	+				+1.2
2,901,193	+				-0.2
2,901,193	+				-1.2
2,901,196	-				+0.1
2,901,196	-				+0.5
2,901,196	-				-0.3
2,901,196	-				-1.7
2,901,196	-				-2.1
2,901,196	-				+1.0
2,901,196	-				-0.1
2,901,196	-				-0.6
2,901,196	-				+0.3
2,901,196	-				+1.3
2,901,196	-				-0.3
2,901,201	-				+1.0
2,901,201	-				-0.8
2,901,201	-				-1.4
2,901,201	-				+0.3
2,901,201	-				-0.9
2,901,201	-				-0.7
2,901,223	-				-0.6
2,901,227	-		GFF2846	0.10	+0.3
2,901,236	+		GFF2846	0.11	+0.7
2,901,236	+		GFF2846	0.11	+1.0
2,901,236	+		GFF2846	0.11	+0.4
2,901,236	+		GFF2846	0.11	-0.3
2,901,236	+		GFF2846	0.11	-1.0
2,901,236	+		GFF2846	0.11	+0.9
2,901,236	+		GFF2846	0.11	+0.6
2,901,246	+		GFF2846	0.11	-1.9
2,901,246	+		GFF2846	0.11	-1.6
2,901,259	+		GFF2846	0.12	+0.7
2,901,281	+		GFF2846	0.14	+0.9
2,901,281	+		GFF2846	0.14	-0.4
2,901,297	-		GFF2846	0.15	-1.6
2,901,364	+		GFF2846	0.19	-0.6
2,901,395	-		GFF2846	0.21	-2.0
2,901,395	-		GFF2846	0.21	+1.4
2,901,435	+		GFF2846	0.23	-0.9
2,901,451	+		GFF2846	0.24	-0.9
2,901,451	-		GFF2846	0.24	-1.0
2,901,452	+		GFF2846	0.25	-0.1
2,901,477	-		GFF2846	0.26	+0.2
2,901,484	+		GFF2846	0.27	-1.6
2,901,484	+		GFF2846	0.27	-2.3
2,901,484	+		GFF2846	0.27	+0.3
2,901,484	+		GFF2846	0.27	-2.1
2,901,484	+		GFF2846	0.27	-1.7
2,901,492	-		GFF2846	0.27	-0.2
2,901,492	-		GFF2846	0.27	+0.6
2,901,492	-		GFF2846	0.27	-0.8
2,901,492	-		GFF2846	0.27	-0.7
2,901,505	+		GFF2846	0.28	+0.6
2,901,516	-		GFF2846	0.29	+0.2
2,901,527	+		GFF2846	0.29	-0.7
2,901,528	+		GFF2846	0.29	-1.4
2,901,536	+		GFF2846	0.30	-0.0
2,901,536	-		GFF2846	0.30	+0.3
2,901,556	-		GFF2846	0.31	-0.5
2,901,580	+		GFF2846	0.33	-3.6
2,901,580	+		GFF2846	0.33	-0.2
2,901,580	+		GFF2846	0.33	-1.4
2,901,580	+		GFF2846	0.33	+0.9
2,901,588	-		GFF2846	0.33	-0.0
2,901,588	-		GFF2846	0.33	+0.3
2,901,588	-		GFF2846	0.33	-1.2
2,901,588	-		GFF2846	0.33	-0.9
2,901,588	-		GFF2846	0.33	+0.3
2,901,588	-		GFF2846	0.33	+1.1
2,901,588	-		GFF2846	0.33	-0.2
2,901,606	-		GFF2846	0.34	+0.1
2,901,614	+		GFF2846	0.35	-1.7
2,901,645	+		GFF2846	0.37	-0.7
2,901,650	+		GFF2846	0.37	-1.0
2,901,682	+		GFF2846	0.39	-1.8
2,901,687	+		GFF2846	0.40	-0.4
2,901,695	-		GFF2846	0.40	-0.9
2,901,695	-		GFF2846	0.40	+0.0
2,901,720	+		GFF2846	0.42	+0.1
2,901,720	+		GFF2846	0.42	+1.2
2,901,726	+		GFF2846	0.42	+0.4
2,901,728	-		GFF2846	0.42	+0.4
2,901,728	-		GFF2846	0.42	+0.2
2,901,734	-		GFF2846	0.42	-0.9
2,901,734	-		GFF2846	0.42	-0.1
2,901,734	-		GFF2846	0.42	-0.5
2,901,750	+		GFF2846	0.44	-0.4
2,901,750	+		GFF2846	0.44	+1.3
2,901,764	+		GFF2846	0.44	+0.5
2,901,769	+		GFF2846	0.45	+1.3
2,901,777	-		GFF2846	0.45	-0.7
2,901,781	-		GFF2846	0.45	-0.3
2,901,781	-		GFF2846	0.45	-0.4
2,901,783	+		GFF2846	0.46	-0.5
2,901,798	-		GFF2846	0.47	-0.4
2,901,835	-		GFF2846	0.49	-0.6
2,901,860	-		GFF2846	0.51	-0.7
2,901,887	+		GFF2846	0.52	-1.2
2,901,887	+		GFF2846	0.52	-0.5
2,901,928	-		GFF2846	0.55	+0.2
2,901,951	+		GFF2846	0.56	-1.3
2,901,954	-		GFF2846	0.56	-0.8
2,901,960	-		GFF2846	0.57	-1.5
2,901,964	+		GFF2846	0.57	+0.9
2,901,964	+		GFF2846	0.57	-0.3
2,901,972	-		GFF2846	0.58	+0.1
2,901,972	-		GFF2846	0.58	+0.5
2,901,972	-		GFF2846	0.58	+0.1
2,901,972	-		GFF2846	0.58	+0.4
2,902,000	+		GFF2846	0.59	-0.9
2,902,067	-		GFF2846	0.64	+0.7
2,902,090	+		GFF2846	0.65	+0.7
2,902,106	+		GFF2846	0.66	-0.1
2,902,114	-		GFF2846	0.67	+0.2
2,902,119	+		GFF2846	0.67	-0.6
2,902,129	-		GFF2846	0.68	+1.4
2,902,136	-		GFF2846	0.68	+0.9
2,902,146	-		GFF2846	0.69	-1.0
2,902,177	+		GFF2846	0.71	-0.6
2,902,182	+		GFF2846	0.71	+0.7
2,902,192	+		GFF2846	0.72	+1.4
2,902,216	-		GFF2846	0.73	-0.6
2,902,216	-		GFF2846	0.73	+1.0
2,902,221	-		GFF2846	0.73	-1.5
2,902,221	-		GFF2846	0.73	+0.1
2,902,229	+		GFF2846	0.74	+0.2
2,902,229	+		GFF2846	0.74	-0.7
2,902,237	-		GFF2846	0.74	-2.0
2,902,237	-		GFF2846	0.74	-0.5
2,902,237	-		GFF2846	0.74	-0.3
2,902,237	-		GFF2846	0.74	-1.5
2,902,237	-		GFF2846	0.74	-0.2
2,902,237	-		GFF2846	0.74	-0.2
2,902,248	+		GFF2846	0.75	+1.1
2,902,268	+		GFF2846	0.76	-2.5
2,902,318	-		GFF2846	0.80	-1.2
2,902,341	+		GFF2846	0.81	+0.1
2,902,344	-		GFF2846	0.81	-0.6
2,902,371	-		GFF2846	0.83	-0.5
2,902,382	+		GFF2846	0.84	-1.5
2,902,382	+		GFF2846	0.84	-1.3
2,902,382	+		GFF2846	0.84	-0.6
2,902,382	+		GFF2846	0.84	-0.5
2,902,382	+		GFF2846	0.84	+0.2
2,902,382	+		GFF2846	0.84	-1.3
2,902,382	+		GFF2846	0.84	-0.6
2,902,382	+		GFF2846	0.84	+0.4
2,902,382	-		GFF2846	0.84	-1.0
2,902,390	-		GFF2846	0.84	-0.0
2,902,390	-		GFF2846	0.84	+1.7
2,902,404	-		GFF2846	0.85	-0.5
2,902,413	+		GFF2846	0.86	-2.3
2,902,420	-		GFF2846	0.86	+0.4
2,902,423	+		GFF2846	0.86	-1.1
2,902,451	+		GFF2846	0.88	-1.5
2,902,451	+		GFF2846	0.88	+0.7
2,902,459	-		GFF2846	0.89	+0.8
2,902,462	+		GFF2846	0.89	-1.6
2,902,467	+		GFF2846	0.89	-0.3
2,902,469	-		GFF2846	0.89	-0.5
2,902,472	+		GFF2846	0.89	-0.1
2,902,480	-				+0.4
2,902,505	-				+0.3
2,902,510	+				+0.7
2,902,528	+				+0.2
2,902,528	+				+0.2
2,902,528	+				-0.4
2,902,528	+				+1.0
2,902,528	+				-0.1
2,902,531	+				+1.3
2,902,536	-				-0.6
2,902,536	-				-2.5
2,902,565	+				+0.1
2,902,569	-				-1.3
2,902,569	-				-0.1
2,902,576	+				-0.8
2,902,576	+				-0.1
2,902,600	-				-1.3
2,902,631	+				-0.7
2,902,636	+				-0.6
2,902,636	+				-0.7
2,902,657	+				+0.1
2,902,694	+				+0.5
2,902,702	-				-1.2
2,902,702	-				-0.2
2,902,742	+				+1.1
2,902,742	+				+0.5
2,902,742	+				+0.6
2,902,744	-				+2.2
2,902,750	-				-1.2
2,902,750	-				-1.6
2,902,750	-				-0.6
2,902,750	-				+0.2
2,902,750	-				-1.2
2,902,756	-				-0.1
2,902,756	-				-0.5
2,902,762	-				+1.0
2,902,766	-				+1.7
2,902,795	+		GFF2847	0.13	+1.0
2,902,796	+		GFF2847	0.13	+0.7
2,902,796	+		GFF2847	0.13	-0.1
2,902,804	-		GFF2847	0.14	-0.9
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