Strain Fitness in Sphingobium sp. HT1-2 around GFF2799

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,833,969	-				+0.5
2,833,969	-				+1.2
2,833,990	+				-0.6
2,833,990	+				+0.9
2,833,990	+				-0.3
2,833,998	-				+0.6
2,834,003	-				-2.6
2,834,036	-				+0.1
2,834,048	-				+0.2
2,834,052	-				+0.3
2,834,052	-				+1.1
2,834,056	+				-0.0
2,834,066	+				-0.6
2,834,066	+				+0.2
2,834,066	+				+0.1
2,834,066	+				+0.6
2,834,066	+				-1.1
2,834,066	+				+0.9
2,834,066	+				-0.4
2,834,066	+				+0.3
2,834,066	+				+0.3
2,834,066	+				-0.4
2,834,074	-				-0.7
2,834,074	-				-1.1
2,834,074	-				-1.6
2,834,074	-				-0.8
2,834,074	-				-0.1
2,834,079	-				+0.5
2,834,093	+		GFF2798	0.10	-1.1
2,834,096	-		GFF2798	0.11	-0.3
2,834,114	+		GFF2798	0.13	-0.7
2,834,114	+		GFF2798	0.13	+0.1
2,834,121	+		GFF2798	0.14	-1.4
2,834,127	-		GFF2798	0.15	-0.5
2,834,140	+		GFF2798	0.17	-0.4
2,834,148	-		GFF2798	0.18	+0.2
2,834,148	-		GFF2798	0.18	+0.1
2,834,148	-		GFF2798	0.18	+1.0
2,834,156	+		GFF2798	0.19	-2.7
2,834,170	-		GFF2798	0.21	-0.5
2,834,199	-		GFF2798	0.25	+0.2
2,834,199	-		GFF2798	0.25	-0.1
2,834,200	+		GFF2798	0.25	-1.3
2,834,244	+		GFF2798	0.31	-0.8
2,834,245	-		GFF2798	0.31	+1.1
2,834,278	+		GFF2798	0.35	-1.2
2,834,283	+		GFF2798	0.36	-1.8
2,834,291	-		GFF2798	0.37	+0.8
2,834,291	-		GFF2798	0.37	-1.8
2,834,305	+		GFF2798	0.39	+0.2
2,834,305	-		GFF2798	0.39	-1.2
2,834,311	-		GFF2798	0.40	-0.5
2,834,329	+		GFF2798	0.42	-0.9
2,834,329	+		GFF2798	0.42	-0.6
2,834,329	+		GFF2798	0.42	-1.4
2,834,337	-		GFF2798	0.43	-1.8
2,834,337	-		GFF2798	0.43	+0.3
2,834,340	+		GFF2798	0.44	-0.9
2,834,356	-		GFF2798	0.46	-2.2
2,834,381	+		GFF2798	0.49	+0.7
2,834,472	-		GFF2798	0.61	-0.0
2,834,476	+		GFF2798	0.62	-1.2
2,834,482	-		GFF2798	0.63	-0.7
2,834,509	+		GFF2798	0.66	+0.5
2,834,509	+		GFF2798	0.66	-1.3
2,834,517	-		GFF2798	0.67	+0.5
2,834,539	-		GFF2798	0.70	-0.4
2,834,541	+		GFF2798	0.71	-0.9
2,834,541	+		GFF2798	0.71	+0.7
2,834,541	+		GFF2798	0.71	-0.8
2,834,574	+		GFF2798	0.75	+0.4
2,834,574	+		GFF2798	0.75	-1.9
2,834,578	+		GFF2798	0.76	-0.8
2,834,596	+		GFF2798	0.78	-0.2
2,834,596	+		GFF2798	0.78	+0.1
2,834,598	-		GFF2798	0.78	-0.7
2,834,604	-		GFF2798	0.79	+0.2
2,834,604	-		GFF2798	0.79	-2.2
2,834,642	+		GFF2798	0.84	+0.5
2,834,647	+		GFF2798	0.85	-0.4
2,834,666	+		GFF2798	0.88	-0.8
2,834,666	+		GFF2798	0.88	-0.4
2,834,666	+		GFF2798	0.88	-0.0
2,834,666	+		GFF2798	0.88	-0.5
2,834,674	-		GFF2798	0.89	-2.4
2,834,674	-		GFF2798	0.89	+1.5
2,834,674	-		GFF2798	0.89	-1.9
2,834,674	-		GFF2798	0.89	-0.9
2,834,674	-		GFF2798	0.89	+0.4
2,834,703	-				+1.1
2,834,709	+				+0.4
2,834,709	+				-1.7
2,834,709	+				-1.7
2,834,717	-				-0.0
2,834,717	-				-0.7
2,834,717	-				-0.3
2,834,717	-				-1.4
2,834,717	-				+0.6
2,834,738	+				-2.0
2,834,746	-				-1.3
2,834,750	+				-1.0
2,834,751	+				+0.4
2,834,751	+				+0.8
2,834,751	+				+0.1
2,834,757	+				+1.0
2,834,757	+				-0.7
2,834,757	+				-1.3
2,834,757	+				+0.6
2,834,757	+				-0.2
2,834,757	+				-0.6
2,834,757	+				+0.2
2,834,757	+				-0.6
2,834,764	-				-0.1
2,834,765	-				-1.4
2,834,765	-				-1.2
2,834,765	-				-0.4
2,834,765	-				-0.3
2,834,765	-				-1.4
2,834,765	-				-1.1
2,834,765	-				-0.3
2,834,765	-				+0.7
2,834,765	-				-3.0
2,834,765	-				-0.1
2,834,765	-				+0.1
2,834,765	-				+0.2
2,834,765	-				+0.1
2,834,765	-				-0.7
2,834,765	-				-0.7
2,834,765	-				-0.7
2,834,767	+				+0.3
2,834,767	+				-1.4
2,834,770	+				-0.5
2,834,770	-				-0.6
2,834,775	-				-1.1
2,834,775	-				+0.2
2,834,792	+				+1.3
2,834,827	-				-2.0
2,834,831	+				+1.5
2,834,839	-				-0.0
2,834,844	-				-0.4
2,834,899	+				-0.9
2,834,912	+				+0.3
2,834,914	-				-1.5
2,834,919	+				-1.2
2,834,920	-				+0.1
2,834,942	+				-0.3
2,834,944	+				+1.7
2,834,944	+				-0.5
2,834,944	+				-0.1
2,834,950	-				-0.0
2,834,950	-				+0.7
2,834,952	-				-1.1
2,834,952	-				+1.1
2,834,957	-				-0.5
2,834,957	-				-0.2
2,834,957	-				-0.4
2,834,974	+				-0.5
2,835,001	+		GFF2799	0.13	-0.6
2,835,040	-		GFF2799	0.26	-1.0
2,835,055	+		GFF2799	0.30	-0.9
2,835,067	+		GFF2799	0.34	+0.3
2,835,072	+		GFF2799	0.36	-1.1
2,835,072	+		GFF2799	0.36	-0.1
2,835,072	+		GFF2799	0.36	+0.5
2,835,075	-		GFF2799	0.37	-1.2
2,835,076	+		GFF2799	0.37	+1.2
2,835,093	+		GFF2799	0.43	+0.5
2,835,096	+		GFF2799	0.44	+0.2
2,835,101	-		GFF2799	0.45	+0.6
2,835,115	+		GFF2799	0.50	-0.0
2,835,122	-		GFF2799	0.52	-0.7
2,835,149	+		GFF2799	0.61	+1.5
2,835,149	+		GFF2799	0.61	-0.6
2,835,149	+		GFF2799	0.61	+0.1
2,835,152	-		GFF2799	0.62	-1.4
2,835,157	-		GFF2799	0.63	+0.5
2,835,165	+		GFF2799	0.66	+0.0
2,835,168	+		GFF2799	0.67	-1.4
2,835,185	+		GFF2799	0.72	+1.2
2,835,207	+		GFF2799	0.80	-2.5
2,835,209	+		GFF2799	0.80	-0.0
2,835,215	-		GFF2799	0.82	+0.1
2,835,230	+		GFF2799	0.87	-1.3
2,835,230	+		GFF2799	0.87	-1.4
2,835,238	-		GFF2799	0.90	-2.1
2,835,248	-				+1.9
2,835,251	-				+0.5
2,835,261	-				-0.7
2,835,293	+				+0.4
2,835,293	+				-1.5
2,835,293	+				-0.5
2,835,301	-				+0.7
2,835,301	-				-0.0
2,835,314	+				-0.5
2,835,316	+				+1.6
2,835,358	-		GFF2800	0.14	-0.2
2,835,380	+		GFF2800	0.17	+1.0
2,835,384	+		GFF2800	0.18	+0.5
2,835,384	+		GFF2800	0.18	-0.1
2,835,384	+		GFF2800	0.18	-0.2
2,835,392	-		GFF2800	0.19	-0.0
2,835,392	-		GFF2800	0.19	+0.1
2,835,392	-		GFF2800	0.19	+0.1
2,835,393	+		GFF2800	0.19	-0.1
2,835,397	+		GFF2800	0.19	-0.2
2,835,397	+		GFF2800	0.19	+1.9
2,835,404	+		GFF2800	0.21	+0.6
2,835,406	-		GFF2800	0.21	-1.2
2,835,406	-		GFF2800	0.21	-1.3
2,835,406	-		GFF2800	0.21	+1.6
2,835,407	+		GFF2800	0.21	-0.0
2,835,415	-		GFF2800	0.22	-1.3
2,835,433	+		GFF2800	0.25	-0.6
2,835,435	+		GFF2800	0.25	-1.4
2,835,441	-		GFF2800	0.26	-0.8
2,835,442	-		GFF2800	0.26	+0.0
2,835,445	+		GFF2800	0.27	+0.6
2,835,450	+		GFF2800	0.28	-1.2
2,835,465	+		GFF2800	0.30	+0.0
2,835,465	+		GFF2800	0.30	-0.1
2,835,470	+		GFF2800	0.31	-2.0
2,835,483	-		GFF2800	0.33	-0.1
2,835,497	+		GFF2800	0.35	-0.4
2,835,497	+		GFF2800	0.35	-1.2
2,835,505	-		GFF2800	0.36	-1.1
2,835,505	-		GFF2800	0.36	+0.4
2,835,505	-		GFF2800	0.36	+0.0
2,835,516	+		GFF2800	0.38	-0.3
2,835,571	-		GFF2800	0.46	-0.6
2,835,590	+		GFF2800	0.49	-0.4
2,835,590	+		GFF2800	0.49	-0.3
2,835,595	+		GFF2800	0.50	-2.4
2,835,595	+		GFF2800	0.50	-0.5
2,835,600	+		GFF2800	0.50	-1.5
2,835,603	-		GFF2800	0.51	-0.2
2,835,603	-		GFF2800	0.51	+0.9
2,835,603	-		GFF2800	0.51	+0.1
2,835,603	-		GFF2800	0.51	-1.9
2,835,608	-		GFF2800	0.52	-0.7
2,835,608	-		GFF2800	0.52	+0.4
2,835,644	-		GFF2800	0.57	-1.0
2,835,673	+		GFF2800	0.61	-0.3
2,835,673	+		GFF2800	0.61	-0.5
2,835,676	-		GFF2800	0.62	-2.1
2,835,681	-		GFF2800	0.63	+0.7
2,835,698	+		GFF2800	0.65	+0.4
2,835,712	-		GFF2800	0.67	+0.4
2,835,712	-		GFF2800	0.67	-0.3
2,835,713	-		GFF2800	0.68	-1.3
2,835,718	+		GFF2800	0.68	+0.5
2,835,732	+		GFF2800	0.70	-0.2
2,835,732	+		GFF2800	0.70	-0.4
2,835,748	-		GFF2800	0.73	-1.5
2,835,749	+		GFF2800	0.73	-2.1
2,835,757	-		GFF2800	0.74	-0.3
2,835,757	-		GFF2800	0.74	-2.1
2,835,757	-		GFF2800	0.74	+0.5
2,835,762	-		GFF2800	0.75	-0.2
2,835,792	-		GFF2800	0.80	+0.4
2,835,792	-		GFF2800	0.80	+0.5
2,835,797	-		GFF2800	0.80	+0.5
2,835,875	-				-0.9
2,835,888	+				-1.9
2,835,892	+				+0.4
2,835,896	+				+0.7
2,835,896	-				+0.5
2,835,901	+				+0.4
2,835,902	+				-1.1
2,835,919	+				-2.1
2,835,930	+				-0.3
2,835,938	+				-0.7
2,835,944	-				-0.0
2,835,945	+				-1.1
2,835,945	+				+0.2
2,835,950	+				+0.8
2,835,952	+				+0.6
2,835,953	-				-1.1
2,835,957	+				-1.2
2,835,962	-				+0.6
2,835,994	+				-1.5
2,835,994	+				-0.2
2,835,999	+				-0.0
2,835,999	+				+0.9
2,835,999	+				-0.3
2,835,999	+				-0.7
2,835,999	+				-1.1
2,835,999	+				+1.3
2,835,999	+				+0.8
2,835,999	+				-0.3
2,835,999	+				-0.5
2,835,999	+				+0.6
2,836,000	-				-0.7
2,836,002	-				-0.4
2,836,002	-				-0.4
2,836,004	+				+0.4
2,836,007	-				-1.3
2,836,007	-				+0.2
2,836,007	-				+0.1
2,836,007	-				-1.3
2,836,007	-				+0.8
2,836,007	-				+0.8
2,836,007	-				+0.3
2,836,007	-				-1.9
2,836,007	-				-1.0
2,836,007	-				-2.0
2,836,007	-				+0.0
2,836,007	-				+1.1
2,836,007	-				-0.0
2,836,007	-				-2.1
2,836,007	-				-0.0
2,836,007	-				-2.2
2,836,068	+		GFF2801	0.22	+0.7
2,836,078	+		GFF2801	0.24	-1.1
2,836,086	-		GFF2801	0.26	-0.3
2,836,088	-		GFF2801	0.26	+0.4
2,836,117	+		GFF2801	0.33	-0.4
2,836,122	+		GFF2801	0.34	+0.1
2,836,125	-		GFF2801	0.35	-2.1
2,836,163	+		GFF2801	0.43	-1.4
2,836,185	+		GFF2801	0.48	-1.1
2,836,192	+		GFF2801	0.50	-0.7
2,836,210	-		GFF2801	0.54	-0.1
2,836,210	-		GFF2801	0.54	-0.5
2,836,259	+		GFF2801	0.65	-1.5
2,836,260	+		GFF2801	0.65	-0.8
2,836,260	+		GFF2801	0.65	-0.2
2,836,260	+		GFF2801	0.65	-1.9
2,836,268	-		GFF2801	0.67	-2.2
2,836,268	-		GFF2801	0.67	-1.3
2,836,268	-		GFF2801	0.67	+1.3
2,836,268	-		GFF2801	0.67	-0.1